Wall clock time and date at job start Mon Mar 30 2020 01:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46953 * 111.00236 * 2 1 4 4 H 1.08997 * 109.48869 * 63.22316 * 3 2 1 5 5 C 1.50703 * 109.49308 * 303.15926 * 3 2 1 6 6 H 1.08001 * 119.99654 * 0.10434 * 5 3 2 7 7 C 1.37870 * 120.00378 * 180.10795 * 5 3 2 8 8 N 1.31519 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00352 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47558 * 89.99744 * 9 7 5 11 11 H 1.48501 * 109.47595 * 209.99998 * 9 7 5 12 12 H 1.48504 * 109.46969 * 330.00050 * 9 7 5 13 13 C 1.53056 * 109.36571 * 183.19295 * 3 2 1 14 14 N 1.46963 * 109.36215 * 301.59782 * 13 3 2 15 15 C 1.46956 * 110.87582 * 59.32405 * 14 13 3 16 16 C 1.46954 * 111.00171 * 123.80569 * 2 1 3 17 17 C 1.52999 * 109.48683 * 296.77543 * 16 2 1 18 18 C 1.52998 * 109.48970 * 56.84387 * 16 2 1 19 19 H 1.08998 * 109.47042 * 63.94876 * 1 2 3 20 20 H 1.08997 * 109.47262 * 183.94912 * 1 2 3 21 21 H 1.09003 * 109.46625 * 303.95381 * 1 2 3 22 22 H 0.97005 * 119.99560 * 179.97438 * 8 7 5 23 23 H 1.08994 * 109.49121 * 61.56772 * 13 3 2 24 24 H 1.08998 * 109.48697 * 181.63542 * 13 3 2 25 25 H 1.00897 * 110.99846 * 183.18597 * 14 13 3 26 26 H 1.09004 * 109.48845 * 180.71235 * 15 14 13 27 27 H 1.08997 * 109.49356 * 60.64660 * 15 14 13 28 28 H 1.08999 * 109.47048 * 59.99932 * 17 16 2 29 29 H 1.08999 * 109.47113 * 180.02562 * 17 16 2 30 30 H 1.09000 * 109.47161 * 299.99757 * 17 16 2 31 31 H 1.08993 * 109.47380 * 59.99959 * 18 16 2 32 32 H 1.09004 * 109.46932 * 180.02562 * 18 16 2 33 33 H 1.09000 * 109.46542 * 299.99855 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 1 1.6938 1.8773 0.9173 5 6 1.4505 2.1199 -1.1893 6 1 0.7784 1.6264 -1.8758 7 6 1.8097 3.4340 -1.4011 8 7 2.6285 4.0347 -0.5654 9 14 1.1333 4.3613 -2.8748 10 1 -0.1384 5.0293 -2.4984 11 1 2.1186 5.3830 -3.3116 12 1 0.8821 3.4089 -3.9862 13 6 3.5235 1.3290 -0.0804 14 7 4.0502 0.5657 1.0597 15 6 3.5235 -0.8062 1.0595 16 6 1.9957 -0.7633 1.1400 17 6 1.5720 -0.0880 2.4458 18 6 1.4422 -2.1891 1.0990 19 1 -0.3633 0.4513 -0.9232 20 1 -0.3633 -1.0252 0.0708 21 1 -0.3633 0.5740 0.8525 22 1 2.8815 4.9592 -0.7147 23 1 3.8254 0.8479 -1.0107 24 1 3.9178 2.3447 -0.0513 25 1 5.0592 0.5657 1.0596 26 1 3.9178 -1.3472 1.9198 27 1 3.8253 -1.3116 0.1422 28 1 0.4839 -0.0558 2.5019 29 1 1.9631 -0.6541 3.2912 30 1 1.9675 0.9273 2.4748 31 1 1.7451 -2.6699 0.1690 32 1 1.8327 -2.7548 1.9450 33 1 0.3540 -2.1580 1.1544 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218743349.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:26 Heat of formation + Delta-G solvation = -8.960008 kcal Electronic energy + Delta-G solvation = -13838.509265 eV Core-core repulsion = 11705.345424 eV Total energy + Delta-G solvation = -2133.163842 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.60957 -35.59408 -35.26871 -33.04045 -29.25256 -28.10477 -27.18550 -26.90029 -23.61946 -22.34837 -18.96952 -18.51617 -17.25676 -16.62998 -16.08263 -15.48660 -15.34971 -15.01316 -14.61796 -14.10832 -13.52955 -13.43580 -13.09983 -12.86800 -12.84029 -12.53367 -12.40636 -12.02356 -11.92916 -11.89040 -11.85075 -11.11258 -10.80532 -10.54429 -9.24293 -8.80271 -8.12010 -6.24320 1.41060 1.41928 1.52734 2.41310 3.13423 3.38072 3.58442 3.99337 4.27054 4.30729 4.54239 4.67516 4.71947 4.75431 4.83795 4.86702 4.93254 5.06642 5.09511 5.11499 5.20188 5.34903 5.38860 5.56293 5.71265 5.79336 6.10730 6.31146 6.41456 6.72088 6.84745 6.93085 7.45202 8.93587 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047670 B = 0.012608 C = 0.011036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.227072 B = 2220.332240 C = 2536.645981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.542 5.542 3 C 0.228 3.772 4 H -0.026 1.026 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 0.960 3.040 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.081 3.919 14 N -0.697 5.697 15 C 0.073 3.927 16 C 0.093 3.907 17 C -0.158 4.158 18 C -0.129 4.129 19 H 0.052 0.948 20 H 0.081 0.919 21 H 0.005 0.995 22 H 0.262 0.738 23 H -0.006 1.006 24 H 0.076 0.924 25 H 0.339 0.661 26 H 0.094 0.906 27 H 0.024 0.976 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.518 -9.360 3.148 9.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.266 5.266 3 C 0.121 3.879 4 H -0.008 1.008 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.186 4.186 8 N -0.556 5.556 9 Si 0.786 3.214 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.194 1.194 13 C -0.048 4.048 14 N -0.328 5.328 15 C -0.056 4.056 16 C 0.002 3.998 17 C -0.217 4.217 18 C -0.187 4.187 19 H 0.071 0.929 20 H 0.100 0.900 21 H 0.024 0.976 22 H 0.071 0.929 23 H 0.013 0.987 24 H 0.094 0.906 25 H 0.156 0.844 26 H 0.112 0.888 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.739 -9.188 3.179 9.750 hybrid contribution 0.036 1.055 -0.764 1.303 sum -0.703 -8.132 2.415 8.513 Atomic orbital electron populations 1.22228 0.88350 1.00657 0.99664 1.62387 1.07680 1.15614 1.40958 1.18990 0.90932 0.84045 0.93962 1.00848 1.21471 1.28141 0.96525 1.10369 0.92431 1.25729 0.95390 0.98305 0.99158 1.70025 1.35226 1.12424 1.37973 0.85524 0.78067 0.78204 0.79631 1.20195 1.20740 1.19418 1.21901 0.97330 0.97328 0.88272 1.60602 1.12493 1.14087 1.45590 1.22018 0.94117 0.89352 1.00127 1.21304 0.94504 0.94938 0.89007 1.22201 0.99959 1.01060 0.98433 1.21822 1.01101 0.93273 1.02495 0.92897 0.90032 0.97599 0.92872 0.98734 0.90609 0.84418 0.88787 0.95810 0.93664 0.90997 0.94492 0.92359 0.90229 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.57 8.39 127.69 1.07 2.64 16 2 N -0.54 -23.87 4.54 -851.42 -3.87 -27.74 16 3 C 0.23 11.99 1.56 44.18 0.07 12.06 16 4 H -0.03 -1.55 6.35 -2.39 -0.02 -1.56 16 5 C -0.53 -29.68 7.97 25.60 0.20 -29.48 16 6 H 0.06 3.23 6.46 -2.91 -0.02 3.22 16 7 C 0.01 0.74 5.30 84.65 0.45 1.19 16 8 N -0.92 -53.48 11.34 21.45 0.24 -53.24 16 9 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 C 0.08 4.09 5.75 86.31 0.50 4.59 16 14 N -0.70 -28.41 6.22 -513.41 -3.19 -31.61 16 15 C 0.07 2.56 5.43 86.31 0.47 3.03 16 16 C 0.09 3.32 0.68 3.53 0.00 3.33 16 17 C -0.16 -5.68 7.65 71.98 0.55 -5.13 16 18 C -0.13 -3.52 8.17 71.98 0.59 -2.93 16 19 H 0.05 2.27 6.43 -2.39 -0.02 2.25 16 20 H 0.08 2.66 5.83 -2.39 -0.01 2.64 16 21 H 0.01 0.23 6.80 -2.39 -0.02 0.21 16 22 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 23 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 24 H 0.08 4.25 6.12 -2.39 -0.01 4.24 16 25 H 0.34 11.99 8.90 -89.70 -0.80 11.19 16 26 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.04 1.58 6.65 -2.39 -0.02 1.56 16 29 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.04 1.61 5.94 -2.39 -0.01 1.60 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.06 1.62 6.19 -2.39 -0.01 1.61 16 Total: -1.00 -62.30 246.70 -0.59 -62.89 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.30 Total: 14.16 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 3.90 Total: -10.70 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -6.82 Total: -112.59 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -62.30 -0.59 -62.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218743349.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.932 kcal (2) G-P(sol) polarization free energy of solvation -62.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds