Wall clock time and date at job start Mon Mar 30 2020 01:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46957 * 111.01698 * 2 1 4 4 C 1.53058 * 109.38125 * 176.83376 * 3 2 1 5 5 C 1.53001 * 109.48903 * 298.42168 * 4 3 2 6 6 C 1.53004 * 109.48743 * 178.35877 * 4 3 2 7 7 N 1.46951 * 109.36199 * 58.39228 * 4 3 2 8 8 C 1.46959 * 110.88241 * 300.67711 * 7 4 3 9 9 C 1.46955 * 110.99924 * 236.18856 * 2 1 3 10 10 H 1.09001 * 109.48764 * 63.20154 * 9 2 1 11 11 C 1.50696 * 109.48704 * 303.15486 * 9 2 1 12 12 H 1.07995 * 120.00180 * 324.85769 * 11 9 2 13 13 C 1.37884 * 119.99813 * 144.86224 * 11 9 2 14 14 N 1.31513 * 120.00111 * 178.95870 * 13 11 9 15 15 Si 1.86800 * 120.00005 * 358.95384 * 13 11 9 16 16 H 1.48499 * 109.47236 * 267.94123 * 15 13 11 17 17 H 1.48501 * 109.47105 * 27.94045 * 15 13 11 18 18 H 1.48495 * 109.47136 * 147.93806 * 15 13 11 19 19 H 1.08992 * 109.47109 * 183.81459 * 1 2 3 20 20 H 1.09001 * 109.46912 * 303.81231 * 1 2 3 21 21 H 1.08997 * 109.46892 * 63.80681 * 1 2 3 22 22 H 1.09005 * 109.49168 * 56.85860 * 3 2 1 23 23 H 1.09004 * 109.47565 * 296.80087 * 3 2 1 24 24 H 1.08994 * 109.46905 * 179.89051 * 5 4 3 25 25 H 1.08997 * 109.46864 * 299.89405 * 5 4 3 26 26 H 1.09001 * 109.46869 * 59.89470 * 5 4 3 27 27 H 1.09006 * 109.46879 * 300.10865 * 6 4 3 28 28 H 1.08993 * 109.47303 * 60.10994 * 6 4 3 29 29 H 1.08995 * 109.46813 * 180.11112 * 6 4 3 30 30 H 1.00904 * 110.99806 * 176.81427 * 7 4 3 31 31 H 1.09002 * 109.48762 * 299.36003 * 8 7 4 32 32 H 1.09001 * 109.50875 * 179.30464 * 8 7 4 33 33 H 0.96995 * 120.00034 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9961 1.3718 0.0000 4 6 3.5240 1.3289 0.0797 5 6 3.9482 0.6536 1.3855 6 6 4.0775 2.7547 0.0387 7 7 4.0501 0.5657 -1.0605 8 6 3.5235 -0.8063 -1.0602 9 6 1.9956 -0.7634 -1.1399 10 1 1.6934 -0.2826 -2.0703 11 6 1.4504 -2.1677 -1.0994 12 1 1.2872 -2.6564 -0.1503 13 6 1.1601 -2.8287 -2.2741 14 7 0.7036 -4.0616 -2.2394 15 14 1.4150 -1.9729 -3.9149 16 1 0.1555 -1.3007 -4.3235 17 1 2.4953 -0.9625 -3.7836 18 1 1.7968 -2.9752 -4.9419 19 1 -0.3633 -1.0253 0.0684 20 1 -0.3633 0.5719 0.8539 21 1 -0.3633 0.4536 -0.9221 22 1 1.6021 1.9128 0.8604 23 1 1.6939 1.8772 -0.9173 24 1 5.0363 0.6215 1.4410 25 1 3.5577 1.2200 2.2309 26 1 3.5528 -0.3617 1.4146 27 1 3.7740 3.2356 -0.8914 28 1 3.6870 3.3206 0.8844 29 1 5.1656 2.7237 0.0935 30 1 5.0591 0.5656 -1.0608 31 1 3.8257 -1.3117 -0.1429 32 1 3.9175 -1.3476 -1.9204 33 1 0.4990 -4.5264 -3.0658 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218743576.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:42 Heat of formation + Delta-G solvation = 6.353914 kcal Electronic energy + Delta-G solvation = -13726.902442 eV Core-core repulsion = 11594.402661 eV Total energy + Delta-G solvation = -2132.499780 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.97879 -34.74454 -32.72625 -31.55255 -27.94156 -26.96459 -26.43756 -23.81019 -22.60218 -20.26630 -17.91626 -17.02675 -15.54912 -14.76055 -14.28809 -14.13445 -13.75046 -13.36745 -12.89580 -12.78890 -12.23480 -12.02238 -11.82841 -11.46232 -11.21619 -11.01456 -10.80145 -10.69110 -10.30984 -10.04984 -9.91904 -9.71753 -9.13247 -8.59384 -7.81675 -7.22276 -6.10606 -4.10995 3.27892 3.37338 3.45567 4.40642 4.72507 4.85951 5.19459 5.29015 5.53540 5.57213 5.86505 5.95241 6.07421 6.12479 6.17650 6.20556 6.32613 6.34783 6.41425 6.43780 6.54918 6.75872 6.87756 7.02922 7.21115 7.46050 7.76926 7.94015 8.03710 8.19332 8.66592 8.99833 9.53450 11.01741 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043990 B = 0.013067 C = 0.012099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.351102 B = 2142.339586 C = 2313.771958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.535 5.535 3 C 0.067 3.933 4 C 0.110 3.890 5 C -0.169 4.169 6 C -0.136 4.136 7 N -0.689 5.689 8 C 0.065 3.935 9 C 0.188 3.812 10 H 0.010 0.990 11 C -0.504 4.504 12 H 0.080 0.920 13 C 0.074 3.926 14 N -0.896 5.896 15 Si 0.868 3.132 16 H -0.279 1.279 17 H -0.256 1.256 18 H -0.288 1.288 19 H 0.084 0.916 20 H 0.043 0.957 21 H 0.009 0.991 22 H 0.062 0.938 23 H 0.026 0.974 24 H 0.040 0.960 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.326 0.674 31 H 0.037 0.963 32 H 0.065 0.935 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.846 10.583 3.449 12.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.259 5.259 3 C -0.062 4.062 4 C 0.018 3.982 5 C -0.227 4.227 6 C -0.194 4.194 7 N -0.320 5.320 8 C -0.064 4.064 9 C 0.081 3.919 10 H 0.028 0.972 11 C -0.543 4.543 12 H 0.098 0.902 13 C -0.129 4.129 14 N -0.533 5.533 15 Si 0.695 3.305 16 H -0.205 1.205 17 H -0.180 1.180 18 H -0.214 1.214 19 H 0.102 0.898 20 H 0.061 0.939 21 H 0.027 0.973 22 H 0.080 0.920 23 H 0.045 0.955 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.143 0.857 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.459 10.419 3.313 11.807 hybrid contribution 0.329 0.325 -0.990 1.093 sum 4.788 10.744 2.322 11.989 Atomic orbital electron populations 1.22122 0.88047 1.02877 0.97573 1.62201 1.07383 1.10524 1.45812 1.22085 0.93256 0.91700 0.99194 1.20908 0.94792 0.93044 0.89409 1.22381 0.99391 1.03285 0.97689 1.21791 1.00275 0.95678 1.01633 1.60910 1.11770 1.16433 1.42854 1.22406 0.97605 0.86453 0.99887 1.19743 0.90436 0.94077 0.87649 0.97214 1.20879 1.42391 0.96254 0.94798 0.90191 1.25011 0.94287 0.94736 0.98821 1.69892 1.44429 1.11179 1.27839 0.86973 0.79539 0.79906 0.84097 1.20520 1.18025 1.21411 0.89778 0.93855 0.97259 0.91953 0.95538 0.94121 0.93074 0.90397 0.92301 0.92589 0.93013 0.85714 0.94518 0.91633 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.86 9.27 60.07 0.56 1.42 16 2 N -0.53 -11.53 4.09 -236.12 -0.97 -12.50 16 3 C 0.07 1.23 4.33 -3.76 -0.02 1.21 16 4 C 0.11 1.83 0.94 -131.54 -0.12 1.70 16 5 C -0.17 -2.67 8.11 37.16 0.30 -2.37 16 6 C -0.14 -1.80 8.75 37.16 0.33 -1.48 16 7 N -0.69 -12.72 6.34 -99.82 -0.63 -13.35 16 8 C 0.07 1.43 5.59 -3.77 -0.02 1.40 16 9 C 0.19 4.54 1.52 -68.81 -0.10 4.44 16 10 H 0.01 0.26 5.31 -51.93 -0.28 -0.01 16 11 C -0.50 -13.97 7.50 -34.44 -0.26 -14.23 16 12 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 13 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 14 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 15 Si 0.87 21.63 26.91 -169.99 -4.57 17.05 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.26 -6.27 6.55 56.52 0.37 -5.90 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H 0.08 1.90 7.00 -51.93 -0.36 1.54 16 20 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 21 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 22 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.46 5.94 -51.93 -0.31 1.15 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.33 5.23 8.81 -39.29 -0.35 4.88 16 31 H 0.04 0.81 6.35 -51.93 -0.33 0.48 16 32 H 0.07 1.48 7.86 -51.93 -0.41 1.07 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 254.44 15.07 3.83 3.83 Total: -1.00 -29.45 254.44 -6.43 -35.88 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.42 Total: 1.16 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 0.56 Total: -5.89 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.83 Total: -52.04 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.57 Total: 17.05 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.45 -6.43 -35.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218743576.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.230 kcal (2) G-P(sol) polarization free energy of solvation -29.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds