Wall clock time and date at job start Mon Mar 30 2020 01:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46957 * 111.01698 * 2 1 4 4 C 1.53058 * 109.38125 * 176.83376 * 3 2 1 5 5 C 1.53001 * 109.48903 * 298.42168 * 4 3 2 6 6 C 1.53004 * 109.48743 * 178.35877 * 4 3 2 7 7 N 1.46951 * 109.36199 * 58.39228 * 4 3 2 8 8 C 1.46959 * 110.88241 * 300.67711 * 7 4 3 9 9 C 1.46955 * 110.99924 * 236.18856 * 2 1 3 10 10 H 1.09001 * 109.48764 * 63.20154 * 9 2 1 11 11 C 1.50696 * 109.48704 * 303.15486 * 9 2 1 12 12 H 1.07995 * 120.00180 * 324.85769 * 11 9 2 13 13 C 1.37884 * 119.99813 * 144.86224 * 11 9 2 14 14 N 1.31513 * 120.00111 * 178.95870 * 13 11 9 15 15 Si 1.86800 * 120.00005 * 358.95384 * 13 11 9 16 16 H 1.48499 * 109.47236 * 267.94123 * 15 13 11 17 17 H 1.48501 * 109.47105 * 27.94045 * 15 13 11 18 18 H 1.48495 * 109.47136 * 147.93806 * 15 13 11 19 19 H 1.08992 * 109.47109 * 183.81459 * 1 2 3 20 20 H 1.09001 * 109.46912 * 303.81231 * 1 2 3 21 21 H 1.08997 * 109.46892 * 63.80681 * 1 2 3 22 22 H 1.09005 * 109.49168 * 56.85860 * 3 2 1 23 23 H 1.09004 * 109.47565 * 296.80087 * 3 2 1 24 24 H 1.08994 * 109.46905 * 179.89051 * 5 4 3 25 25 H 1.08997 * 109.46864 * 299.89405 * 5 4 3 26 26 H 1.09001 * 109.46869 * 59.89470 * 5 4 3 27 27 H 1.09006 * 109.46879 * 300.10865 * 6 4 3 28 28 H 1.08993 * 109.47303 * 60.10994 * 6 4 3 29 29 H 1.08995 * 109.46813 * 180.11112 * 6 4 3 30 30 H 1.00904 * 110.99806 * 176.81427 * 7 4 3 31 31 H 1.09002 * 109.48762 * 299.36003 * 8 7 4 32 32 H 1.09001 * 109.50875 * 179.30464 * 8 7 4 33 33 H 0.96995 * 120.00034 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9961 1.3718 0.0000 4 6 3.5240 1.3289 0.0797 5 6 3.9482 0.6536 1.3855 6 6 4.0775 2.7547 0.0387 7 7 4.0501 0.5657 -1.0605 8 6 3.5235 -0.8063 -1.0602 9 6 1.9956 -0.7634 -1.1399 10 1 1.6934 -0.2826 -2.0703 11 6 1.4504 -2.1677 -1.0994 12 1 1.2872 -2.6564 -0.1503 13 6 1.1601 -2.8287 -2.2741 14 7 0.7036 -4.0616 -2.2394 15 14 1.4150 -1.9729 -3.9149 16 1 0.1555 -1.3007 -4.3235 17 1 2.4953 -0.9625 -3.7836 18 1 1.7968 -2.9752 -4.9419 19 1 -0.3633 -1.0253 0.0684 20 1 -0.3633 0.5719 0.8539 21 1 -0.3633 0.4536 -0.9221 22 1 1.6021 1.9128 0.8604 23 1 1.6939 1.8772 -0.9173 24 1 5.0363 0.6215 1.4410 25 1 3.5577 1.2200 2.2309 26 1 3.5528 -0.3617 1.4146 27 1 3.7740 3.2356 -0.8914 28 1 3.6870 3.3206 0.8844 29 1 5.1656 2.7237 0.0935 30 1 5.0591 0.5656 -1.0608 31 1 3.8257 -1.3117 -0.1429 32 1 3.9175 -1.3476 -1.9204 33 1 0.4990 -4.5264 -3.0658 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218743576.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:42 Heat of formation + Delta-G solvation = -16.292598 kcal Electronic energy + Delta-G solvation = -13727.884468 eV Core-core repulsion = 11594.402661 eV Total energy + Delta-G solvation = -2133.481807 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.52345 -36.36901 -34.69113 -33.28590 -29.71493 -28.19434 -27.94516 -25.65110 -24.25661 -21.93951 -19.52411 -19.13880 -17.16377 -16.26881 -16.02399 -15.85952 -15.36489 -14.95954 -14.71983 -14.37040 -13.96854 -13.48224 -13.09339 -12.98625 -12.72496 -12.58509 -12.54187 -12.14504 -11.95329 -11.81459 -11.75047 -11.46898 -11.05884 -10.76290 -9.32262 -8.94146 -8.31995 -6.35886 1.28766 1.33179 1.46422 2.30726 2.96741 3.30872 3.39702 3.94617 4.20080 4.25975 4.51314 4.53256 4.61934 4.71748 4.73443 4.80031 4.85520 4.95315 4.98305 5.03678 5.15476 5.19435 5.29619 5.37146 5.58324 5.59445 6.06599 6.16872 6.33582 6.66369 6.69079 6.76589 7.31923 8.84356 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043990 B = 0.013067 C = 0.012099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.351102 B = 2142.339586 C = 2313.771958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.546 5.546 3 C 0.064 3.936 4 C 0.105 3.895 5 C -0.161 4.161 6 C -0.127 4.127 7 N -0.690 5.690 8 C 0.075 3.925 9 C 0.193 3.807 10 H -0.004 1.004 11 C -0.500 4.500 12 H 0.037 0.963 13 C 0.022 3.978 14 N -0.942 5.942 15 Si 0.932 3.068 16 H -0.276 1.276 17 H -0.247 1.247 18 H -0.282 1.282 19 H 0.051 0.949 20 H 0.078 0.922 21 H 0.007 0.993 22 H 0.089 0.911 23 H 0.019 0.981 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.344 0.656 31 H 0.028 0.972 32 H 0.054 0.946 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.038 13.288 3.514 15.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.270 5.270 3 C -0.065 4.065 4 C 0.013 3.987 5 C -0.220 4.220 6 C -0.185 4.185 7 N -0.322 5.322 8 C -0.055 4.055 9 C 0.085 3.915 10 H 0.013 0.987 11 C -0.539 4.539 12 H 0.055 0.945 13 C -0.177 4.177 14 N -0.581 5.581 15 Si 0.757 3.243 16 H -0.201 1.201 17 H -0.171 1.171 18 H -0.208 1.208 19 H 0.070 0.930 20 H 0.097 0.903 21 H 0.025 0.975 22 H 0.107 0.893 23 H 0.037 0.963 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.162 0.838 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.668 13.150 3.394 14.717 hybrid contribution -0.065 -0.501 -0.882 1.017 sum 5.603 12.650 2.512 14.061 Atomic orbital electron populations 1.22082 0.87777 1.01426 0.99017 1.62126 1.07836 1.12726 1.44314 1.22269 0.94719 0.89512 0.99981 1.21105 0.93649 0.94971 0.88933 1.22284 1.00506 1.01278 0.97962 1.21721 1.01308 0.92955 1.02469 1.60810 1.13085 1.14089 1.44222 1.22044 0.95906 0.88539 0.98987 1.19562 0.91957 0.91989 0.88026 0.98653 1.20984 1.41895 0.98025 0.92990 0.94515 1.25754 0.94250 0.95246 1.02436 1.70023 1.46350 1.12872 1.28903 0.85949 0.79674 0.78993 0.79699 1.20150 1.17053 1.20791 0.93049 0.90322 0.97476 0.89292 0.96268 0.92309 0.91312 0.93922 0.92573 0.90477 0.91307 0.83765 0.95391 0.92777 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.84 9.27 127.69 1.18 3.02 16 2 N -0.55 -23.12 4.09 -900.96 -3.69 -26.80 16 3 C 0.06 2.16 4.33 86.31 0.37 2.53 16 4 C 0.10 3.13 0.94 3.54 0.00 3.13 16 5 C -0.16 -4.64 8.11 71.98 0.58 -4.06 16 6 C -0.13 -2.77 8.75 71.98 0.63 -2.14 16 7 N -0.69 -23.76 6.34 -469.74 -2.98 -26.74 16 8 C 0.08 3.22 5.59 86.31 0.48 3.71 16 9 C 0.19 9.31 1.52 44.17 0.07 9.37 16 10 H 0.00 -0.21 5.31 -2.39 -0.01 -0.22 16 11 C -0.50 -28.64 7.50 25.60 0.19 -28.44 16 12 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 13 C 0.02 1.26 5.47 84.66 0.46 1.72 16 14 N -0.94 -58.53 13.96 21.45 0.30 -58.23 16 15 Si 0.93 45.19 26.91 68.60 1.85 47.04 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.25 -11.51 6.55 99.48 0.65 -10.86 16 18 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 19 H 0.05 2.39 7.00 -2.39 -0.02 2.37 16 20 H 0.08 2.59 8.13 -2.39 -0.02 2.57 16 21 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 22 H 0.09 2.56 8.13 -2.38 -0.02 2.54 16 23 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.04 1.54 5.94 -2.39 -0.01 1.52 16 27 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.34 9.95 8.81 -89.69 -0.79 9.16 16 31 H 0.03 1.24 6.35 -2.39 -0.02 1.22 16 32 H 0.05 2.41 7.86 -2.39 -0.02 2.39 16 33 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -64.83 254.44 -0.31 -65.14 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.23 Total: 10.75 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 3.98 Total: -11.16 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -6.37 Total: -111.77 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.85 Total: 47.04 kcal Total: -64.83 -0.31 -65.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218743576.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.851 kcal (2) G-P(sol) polarization free energy of solvation -64.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds