Wall clock time and date at job start Mon Mar 30 2020 01:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46949 * 111.00012 * 2 1 4 4 C 1.53052 * 109.36740 * 183.18745 * 3 2 1 5 5 C 1.52996 * 109.49203 * 181.63352 * 4 3 2 6 6 C 1.52999 * 109.48879 * 61.56300 * 4 3 2 7 7 N 1.46958 * 109.36105 * 301.59952 * 4 3 2 8 8 C 1.46961 * 110.88075 * 59.32130 * 7 4 3 9 9 C 1.46953 * 110.99798 * 123.80241 * 2 1 3 10 10 H 1.09009 * 109.48807 * 296.80165 * 9 2 1 11 11 C 1.50701 * 109.49442 * 56.84344 * 9 2 1 12 12 H 1.08000 * 119.99520 * 359.97438 * 11 9 2 13 13 C 1.37867 * 120.00423 * 180.02562 * 11 9 2 14 14 N 1.31520 * 120.00110 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 120.00271 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.46798 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.46953 * 120.00013 * 15 13 11 18 18 H 1.48497 * 109.47071 * 239.99901 * 15 13 11 19 19 H 1.08992 * 109.47459 * 296.19857 * 1 2 3 20 20 H 1.09004 * 109.47040 * 56.20008 * 1 2 3 21 21 H 1.09000 * 109.47033 * 176.19960 * 1 2 3 22 22 H 1.09004 * 109.48990 * 303.15509 * 3 2 1 23 23 H 1.09007 * 109.48755 * 63.21962 * 3 2 1 24 24 H 1.08998 * 109.47035 * 179.89282 * 5 4 3 25 25 H 1.09008 * 109.46908 * 299.89045 * 5 4 3 26 26 H 1.08994 * 109.46987 * 59.88767 * 5 4 3 27 27 H 1.08997 * 109.47706 * 300.11592 * 6 4 3 28 28 H 1.09008 * 109.46821 * 60.11059 * 6 4 3 29 29 H 1.08994 * 109.47646 * 180.11060 * 6 4 3 30 30 H 1.00891 * 111.00063 * 295.45014 * 7 4 3 31 31 H 1.08996 * 109.48611 * 180.71007 * 8 7 4 32 32 H 1.08997 * 109.51039 * 60.65181 * 8 7 4 33 33 H 0.97000 * 120.00156 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3291 -0.0803 5 6 4.0770 2.7548 -0.0394 6 6 3.9473 0.6537 -1.3861 7 7 4.0501 0.5659 1.0598 8 6 3.5235 -0.8062 1.0598 9 6 1.9956 -0.7633 1.1400 10 1 1.6934 -0.2823 2.0704 11 6 1.4505 -2.1676 1.0999 12 1 0.7795 -2.4639 0.3072 13 6 1.8074 -3.0739 2.0756 14 7 2.6241 -2.7130 3.0413 15 14 1.1310 -4.8145 2.0262 16 1 0.2401 -4.9660 0.8479 17 1 2.2551 -5.7796 1.9249 18 1 0.3598 -5.0812 3.2669 19 1 -0.3634 0.4537 0.9220 20 1 -0.3633 0.5717 -0.8540 21 1 -0.3633 -1.0254 -0.0681 22 1 1.6013 1.9128 -0.8603 23 1 1.6937 1.8773 0.9174 24 1 5.1651 2.7238 -0.0947 25 1 3.6862 3.3207 -0.8852 26 1 3.7739 3.2357 0.8906 27 1 3.5519 -0.3616 -1.4151 28 1 3.5565 1.2200 -2.2315 29 1 5.0353 0.6215 -1.4421 30 1 3.8465 1.0313 1.9315 31 1 3.9178 -1.3470 1.9200 32 1 3.8253 -1.3119 0.1427 33 1 2.8755 -3.3507 3.7276 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218743634.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:44 Heat of formation + Delta-G solvation = -14.707542 kcal Electronic energy + Delta-G solvation = -13713.880952 eV Core-core repulsion = 11580.467879 eV Total energy + Delta-G solvation = -2133.413074 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.54532 -36.20042 -34.82762 -32.82333 -29.27106 -28.25850 -27.80712 -25.91325 -24.06163 -21.98409 -19.83373 -18.48161 -16.99079 -16.52245 -15.92232 -15.70496 -15.54014 -15.04194 -14.24195 -14.05838 -13.57162 -13.31674 -12.90592 -12.81690 -12.74435 -12.58609 -12.48166 -12.36698 -12.09545 -11.77611 -11.68241 -11.47758 -11.09728 -10.60480 -9.22067 -8.89902 -8.15659 -6.25949 1.39508 1.41773 1.53265 2.39821 3.12059 3.25915 3.54164 4.08520 4.20205 4.24843 4.51529 4.63651 4.65828 4.67140 4.82470 4.92262 4.98738 5.02085 5.07617 5.16631 5.19461 5.32491 5.37573 5.52740 5.66436 5.72182 6.07785 6.27821 6.40142 6.63495 6.69313 6.88867 7.42159 8.90792 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049419 B = 0.011759 C = 0.010578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.444802 B = 2380.649741 C = 2646.328250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.542 5.542 3 C 0.030 3.970 4 C 0.102 3.898 5 C -0.127 4.127 6 C -0.120 4.120 7 N -0.684 5.684 8 C 0.081 3.919 9 C 0.194 3.806 10 H -0.046 1.046 11 C -0.521 4.521 12 H 0.058 0.942 13 C 0.013 3.987 14 N -0.918 5.918 15 Si 0.961 3.039 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.282 1.282 19 H 0.001 0.999 20 H 0.077 0.923 21 H 0.059 0.941 22 H 0.087 0.913 23 H 0.009 0.991 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.051 0.949 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.327 0.673 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 7.652 -5.939 9.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.267 5.267 3 C -0.100 4.100 4 C 0.011 3.989 5 C -0.185 4.185 6 C -0.178 4.178 7 N -0.313 5.313 8 C -0.048 4.048 9 C 0.086 3.914 10 H -0.029 1.029 11 C -0.560 4.560 12 H 0.076 0.924 13 C -0.186 4.186 14 N -0.558 5.558 15 Si 0.787 3.213 16 H -0.192 1.192 17 H -0.204 1.204 18 H -0.208 1.208 19 H 0.020 0.980 20 H 0.095 0.905 21 H 0.078 0.922 22 H 0.105 0.895 23 H 0.027 0.973 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.143 0.857 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.140 7.181 -6.547 9.784 hybrid contribution -1.649 -0.571 1.550 2.334 sum -0.509 6.610 -4.997 8.302 Atomic orbital electron populations 1.22185 0.88087 1.01675 0.98759 1.62160 1.07646 1.12387 1.44470 1.22901 0.97567 0.89849 0.99668 1.21173 0.90449 0.94907 0.92380 1.21732 1.01653 0.92867 1.02226 1.21637 1.00442 1.00537 0.95166 1.60998 1.61518 1.03527 1.05235 1.21906 0.93369 0.88597 1.00962 1.19695 0.94101 0.92518 0.85128 1.02880 1.21385 1.28235 0.96266 1.10122 0.92357 1.25718 0.95364 1.02616 0.94865 1.69999 1.35356 1.36308 1.14128 0.85449 0.78242 0.79700 0.77904 1.19224 1.20429 1.20753 0.98010 0.90478 0.92231 0.89477 0.97293 0.91450 0.90267 0.92973 0.93946 0.91112 0.92701 0.85679 0.90792 0.93420 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.64 9.26 127.69 1.18 2.83 16 2 N -0.54 -23.65 4.09 -900.95 -3.69 -27.34 16 3 C 0.03 1.09 4.33 86.31 0.37 1.46 16 4 C 0.10 3.48 0.95 3.53 0.00 3.49 16 5 C -0.13 -3.26 8.73 71.98 0.63 -2.63 16 6 C -0.12 -3.98 8.12 71.98 0.58 -3.39 16 7 N -0.68 -27.90 6.35 -469.76 -2.98 -30.88 16 8 C 0.08 4.02 5.38 86.31 0.46 4.49 16 9 C 0.19 10.03 1.94 44.18 0.09 10.11 16 10 H -0.05 -2.71 8.14 -2.38 -0.02 -2.73 16 11 C -0.52 -28.95 7.93 25.60 0.20 -28.74 16 12 H 0.06 3.24 6.45 -2.91 -0.02 3.22 16 13 C 0.01 0.75 5.30 84.65 0.45 1.19 16 14 N -0.92 -52.84 11.35 21.44 0.24 -52.60 16 15 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 20 H 0.08 2.50 8.13 -2.38 -0.02 2.48 16 21 H 0.06 2.54 6.28 -2.39 -0.01 2.52 16 22 H 0.09 2.68 8.13 -2.38 -0.02 2.66 16 23 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 24 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.04 1.67 5.94 -2.39 -0.01 1.66 16 28 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.33 13.27 8.79 -89.70 -0.79 12.48 16 31 H 0.07 4.11 6.13 -2.39 -0.01 4.10 16 32 H 0.05 2.44 6.35 -2.39 -0.02 2.43 16 33 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -59.87 254.24 -0.14 -60.00 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.29 Total: 16.13 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 3.97 Total: -11.20 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -6.43 Total: -110.82 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -59.87 -0.14 -60.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218743634.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.297 kcal (2) G-P(sol) polarization free energy of solvation -59.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds