Wall clock time and date at job start Mon Mar 30 2020 02:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.60784 * 2 1 4 4 C 1.54258 * 109.60569 * 239.66511 * 2 1 3 5 5 C 1.46129 * 111.89524 * 161.64528 * 4 2 1 6 6 N 1.48103 * 112.19633 * 60.86835 * 5 4 2 7 7 C 1.44259 * 109.97499 * 279.70552 * 6 5 4 8 8 H 1.09005 * 108.86467 * 333.21001 * 7 6 5 9 9 C 1.50706 * 108.86229 * 214.69816 * 7 6 5 10 10 H 1.08005 * 119.99758 * 238.53264 * 9 7 6 11 11 C 1.37871 * 120.00102 * 58.53149 * 9 7 6 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 300.00068 * 13 11 9 16 16 H 1.48504 * 109.47102 * 60.00417 * 13 11 9 17 17 C 1.53925 * 112.47516 * 93.95833 * 7 6 5 18 18 N 1.44250 * 109.60496 * 120.50271 * 2 1 3 19 19 C 1.46904 * 111.00179 * 339.59684 * 18 2 1 20 20 H 1.08999 * 109.47668 * 180.33516 * 1 2 3 21 21 H 1.09003 * 109.46752 * 300.33842 * 1 2 3 22 22 H 1.09004 * 109.46974 * 60.32850 * 1 2 3 23 23 H 1.09000 * 108.99096 * 41.02309 * 4 2 1 24 24 H 1.09000 * 108.99189 * 282.26954 * 4 2 1 25 25 H 1.09004 * 108.93618 * 300.16405 * 5 4 2 26 26 H 1.09000 * 108.93637 * 181.56476 * 5 4 2 27 27 H 1.00894 * 111.00119 * 156.46967 * 6 5 4 28 28 H 0.97001 * 119.99646 * 359.97438 * 12 11 9 29 29 H 1.08991 * 108.82838 * 79.17683 * 17 7 6 30 30 H 1.09003 * 108.82197 * 197.48269 * 17 7 6 31 31 H 1.08998 * 109.47248 * 59.99932 * 19 18 2 32 32 H 1.09003 * 109.46545 * 179.97438 * 19 18 2 33 33 H 1.08995 * 109.46695 * 299.99594 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0476 -0.7339 -1.2542 5 6 3.4428 -0.4066 -1.5402 6 7 4.3470 -0.7962 -0.4338 7 6 4.3019 0.1963 0.6122 8 1 4.0308 1.1572 0.1748 9 6 5.6704 0.3127 1.2327 10 1 5.8015 0.1305 2.2891 11 6 6.7548 0.6516 0.4517 12 7 6.5951 0.8739 -0.8346 13 14 8.4509 0.7966 1.2211 14 1 9.4382 1.1691 0.1762 15 1 8.4282 1.8412 2.2763 16 1 8.8348 -0.5060 1.8221 17 6 3.2846 -0.1546 1.7127 18 7 2.0140 -0.6897 1.1708 19 6 0.9798 -0.7485 2.2124 20 1 -0.3634 -1.0276 0.0060 21 1 -0.3633 0.5191 0.8870 22 1 -0.3633 0.5087 -0.8930 23 1 1.4341 -0.4506 -2.1094 24 1 1.9603 -1.8090 -1.0974 25 1 3.5275 0.6676 -1.7048 26 1 3.7494 -0.9270 -2.4475 27 1 5.2902 -0.9278 -0.7670 28 1 5.7143 0.7990 -1.2340 29 1 3.7263 -0.8982 2.3759 30 1 3.0675 0.7440 2.2904 31 1 0.1082 -1.2792 1.8295 32 1 1.3711 -1.2740 3.0836 33 1 0.6928 0.2638 2.4969 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218744127.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:25 Heat of formation + Delta-G solvation = 12.522345 kcal Electronic energy + Delta-G solvation = -13671.199824 eV Core-core repulsion = 11538.967527 eV Total energy + Delta-G solvation = -2132.232297 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.82439 -35.45559 -33.18067 -31.33910 -28.24487 -27.78420 -25.14051 -23.69152 -21.80199 -19.92271 -18.76528 -17.31526 -15.83087 -14.78623 -14.57969 -13.91969 -13.77353 -13.54058 -13.21439 -12.34289 -12.28373 -12.00814 -11.68663 -11.46832 -11.17211 -10.83949 -10.69381 -10.52061 -10.28308 -10.12466 -9.89527 -9.67806 -8.66096 -8.55807 -7.45510 -7.10697 -6.41310 -4.22387 3.40350 3.41974 3.60882 4.42122 4.55835 5.13329 5.25473 5.36894 5.60512 5.62296 5.72110 5.76806 5.98119 6.01673 6.14177 6.23818 6.26068 6.32359 6.43621 6.51890 6.58142 6.69284 6.79101 6.98524 7.29700 7.68599 7.88048 8.06245 8.30262 8.56112 8.72327 8.93101 9.48338 10.88405 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.054922 B = 0.010982 C = 0.009604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.695866 B = 2548.947976 C = 2914.717389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.095 3.905 3 H 0.038 0.962 4 C -0.099 4.099 5 C 0.056 3.944 6 N -0.672 5.672 7 C 0.202 3.798 8 H -0.012 1.012 9 C -0.598 4.598 10 H 0.054 0.946 11 C 0.021 3.979 12 N -0.916 5.916 13 Si 1.073 2.927 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.285 1.285 17 C 0.091 3.909 18 N -0.543 5.543 19 C 0.030 3.970 20 H 0.061 0.939 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.017 0.983 26 H 0.050 0.950 27 H 0.352 0.648 28 H 0.270 0.730 29 H 0.066 0.934 30 H 0.013 0.987 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.881 -1.589 1.336 9.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.015 4.015 3 H 0.056 0.944 4 C -0.137 4.137 5 C -0.073 4.073 6 N -0.307 5.307 7 C 0.093 3.907 8 H 0.005 0.995 9 C -0.638 4.638 10 H 0.073 0.927 11 C -0.183 4.183 12 N -0.554 5.554 13 Si 0.900 3.100 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.212 1.212 17 C -0.036 4.036 18 N -0.268 5.268 19 C -0.118 4.118 20 H 0.080 0.920 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.090 0.910 25 H 0.035 0.965 26 H 0.068 0.932 27 H 0.174 0.826 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.031 0.969 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -7.649 -2.110 1.151 8.018 hybrid contribution -1.321 1.269 0.238 1.847 sum -8.970 -0.840 1.390 9.116 Atomic orbital electron populations 1.22181 0.95937 1.01827 1.01213 1.21212 0.92906 0.95653 0.91681 0.94403 1.20602 0.95989 1.01678 0.95454 1.20775 0.94334 0.97553 0.94646 1.60292 1.13189 1.48056 1.09195 1.18915 0.93929 0.88483 0.89394 0.99511 1.22205 0.93093 1.51330 0.97152 0.92727 1.25934 1.04294 0.92888 0.95184 1.70879 1.26830 1.46312 1.11394 0.83481 0.74709 0.76651 0.75110 1.20730 1.21438 1.21173 1.22486 0.87627 0.96073 0.97423 1.60477 1.03828 1.57029 1.05472 1.22400 0.95587 0.98763 0.95100 0.91999 0.92783 0.92802 0.93106 0.91047 0.96477 0.93152 0.82615 0.91827 0.91567 0.96872 0.91755 0.92422 0.96790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 7.80 37.16 0.29 -1.89 16 2 C 0.09 1.73 2.54 -68.47 -0.17 1.56 16 3 H 0.04 0.78 6.98 -51.93 -0.36 0.42 16 4 C -0.10 -1.81 5.06 -29.33 -0.15 -1.96 16 5 C 0.06 1.21 5.26 -6.42 -0.03 1.17 16 6 N -0.67 -16.63 6.10 -111.92 -0.68 -17.31 16 7 C 0.20 5.23 1.53 -69.79 -0.11 5.12 16 8 H -0.01 -0.35 6.40 -51.93 -0.33 -0.68 16 9 C -0.60 -16.80 8.51 -34.44 -0.29 -17.09 16 10 H 0.05 1.52 7.68 -52.48 -0.40 1.12 16 11 C 0.02 0.59 5.04 -17.82 -0.09 0.50 16 12 N -0.92 -26.94 12.88 55.43 0.71 -26.22 16 13 Si 1.07 24.82 29.90 -169.99 -5.08 19.74 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 17 C 0.09 2.08 5.07 -2.66 -0.01 2.06 16 18 N -0.54 -10.67 4.39 -234.47 -1.03 -11.70 16 19 C 0.03 0.47 8.27 60.07 0.50 0.97 16 20 H 0.06 0.83 7.31 -51.93 -0.38 0.45 16 21 H 0.05 0.72 6.45 -51.93 -0.34 0.38 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.80 8.00 -51.93 -0.42 0.38 16 24 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 25 H 0.02 0.39 7.08 -51.93 -0.37 0.02 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.35 9.44 6.11 -39.29 -0.24 9.20 16 28 H 0.27 7.84 5.19 -40.82 -0.21 7.63 16 29 H 0.07 1.55 7.92 -51.93 -0.41 1.14 16 30 H 0.01 0.29 8.03 -51.93 -0.42 -0.12 16 31 H 0.06 0.89 6.26 -51.93 -0.32 0.57 16 32 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.01 0.21 7.38 -51.93 -0.38 -0.17 16 LS Contribution 246.95 15.07 3.72 3.72 Total: -1.00 -29.35 246.95 -7.50 -36.85 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.07 Total: 4.48 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -0.07 Total: -9.55 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -1.00 Total: -55.23 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.08 Total: 19.74 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.35 -7.50 -36.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218744127.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.371 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds