Wall clock time and date at job start Mon Mar 30 2020 02:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.60784 * 2 1 4 4 C 1.54258 * 109.60569 * 239.66511 * 2 1 3 5 5 C 1.46129 * 111.89524 * 161.64528 * 4 2 1 6 6 N 1.48103 * 112.19633 * 60.86835 * 5 4 2 7 7 C 1.44259 * 109.97499 * 279.70552 * 6 5 4 8 8 H 1.09005 * 108.86467 * 333.21001 * 7 6 5 9 9 C 1.50706 * 108.86229 * 214.69816 * 7 6 5 10 10 H 1.08005 * 119.99758 * 238.53264 * 9 7 6 11 11 C 1.37871 * 120.00102 * 58.53149 * 9 7 6 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 300.00068 * 13 11 9 16 16 H 1.48504 * 109.47102 * 60.00417 * 13 11 9 17 17 C 1.53925 * 112.47516 * 93.95833 * 7 6 5 18 18 N 1.44250 * 109.60496 * 120.50271 * 2 1 3 19 19 C 1.46904 * 111.00179 * 339.59684 * 18 2 1 20 20 H 1.08999 * 109.47668 * 180.33516 * 1 2 3 21 21 H 1.09003 * 109.46752 * 300.33842 * 1 2 3 22 22 H 1.09004 * 109.46974 * 60.32850 * 1 2 3 23 23 H 1.09000 * 108.99096 * 41.02309 * 4 2 1 24 24 H 1.09000 * 108.99189 * 282.26954 * 4 2 1 25 25 H 1.09004 * 108.93618 * 300.16405 * 5 4 2 26 26 H 1.09000 * 108.93637 * 181.56476 * 5 4 2 27 27 H 1.00894 * 111.00119 * 156.46967 * 6 5 4 28 28 H 0.97001 * 119.99646 * 359.97438 * 12 11 9 29 29 H 1.08991 * 108.82838 * 79.17683 * 17 7 6 30 30 H 1.09003 * 108.82197 * 197.48269 * 17 7 6 31 31 H 1.08998 * 109.47248 * 59.99932 * 19 18 2 32 32 H 1.09003 * 109.46545 * 179.97438 * 19 18 2 33 33 H 1.08995 * 109.46695 * 299.99594 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0476 -0.7339 -1.2542 5 6 3.4428 -0.4066 -1.5402 6 7 4.3470 -0.7962 -0.4338 7 6 4.3019 0.1963 0.6122 8 1 4.0308 1.1572 0.1748 9 6 5.6704 0.3127 1.2327 10 1 5.8015 0.1305 2.2891 11 6 6.7548 0.6516 0.4517 12 7 6.5951 0.8739 -0.8346 13 14 8.4509 0.7966 1.2211 14 1 9.4382 1.1691 0.1762 15 1 8.4282 1.8412 2.2763 16 1 8.8348 -0.5060 1.8221 17 6 3.2846 -0.1546 1.7127 18 7 2.0140 -0.6897 1.1708 19 6 0.9798 -0.7485 2.2124 20 1 -0.3634 -1.0276 0.0060 21 1 -0.3633 0.5191 0.8870 22 1 -0.3633 0.5087 -0.8930 23 1 1.4341 -0.4506 -2.1094 24 1 1.9603 -1.8090 -1.0974 25 1 3.5275 0.6676 -1.7048 26 1 3.7494 -0.9270 -2.4475 27 1 5.2902 -0.9278 -0.7670 28 1 5.7143 0.7990 -1.2340 29 1 3.7263 -0.8982 2.3759 30 1 3.0675 0.7440 2.2904 31 1 0.1082 -1.2792 1.8295 32 1 1.3711 -1.2740 3.0836 33 1 0.6928 0.2638 2.4969 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218744127.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:25 Heat of formation + Delta-G solvation = -9.013529 kcal Electronic energy + Delta-G solvation = -13672.133690 eV Core-core repulsion = 11538.967527 eV Total energy + Delta-G solvation = -2133.166163 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.46868 -37.26257 -34.93875 -33.22805 -29.87119 -29.35697 -26.91568 -25.43976 -23.50721 -21.71567 -20.39624 -19.36089 -17.40472 -16.56965 -16.11393 -15.77983 -15.64054 -15.17746 -14.83752 -14.04680 -13.84636 -13.70120 -13.21904 -12.84085 -12.68814 -12.60281 -12.40413 -12.11194 -11.94468 -11.82028 -11.52574 -11.40262 -10.76308 -10.65838 -9.21148 -8.94804 -8.62938 -6.49194 1.52454 1.59522 1.79918 2.51655 2.95640 3.08464 3.71023 3.86477 4.01819 4.26164 4.34488 4.37911 4.45843 4.56571 4.59736 4.68295 4.76895 4.85148 4.91871 5.01201 5.04449 5.08686 5.23353 5.32057 5.43135 5.72076 6.05368 6.25884 6.38733 6.49862 6.66216 6.83261 7.30970 8.64281 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.054922 B = 0.010982 C = 0.009604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.695866 B = 2548.947976 C = 2914.717389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.089 3.911 3 H 0.006 0.994 4 C -0.095 4.095 5 C 0.058 3.942 6 N -0.673 5.673 7 C 0.206 3.794 8 H -0.049 1.049 9 C -0.619 4.619 10 H 0.051 0.949 11 C -0.024 4.024 12 N -0.936 5.936 13 Si 1.121 2.879 14 H -0.283 1.283 15 H -0.273 1.273 16 H -0.269 1.269 17 C 0.102 3.898 18 N -0.553 5.553 19 C 0.029 3.971 20 H 0.076 0.924 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.071 0.929 25 H -0.006 1.006 26 H 0.063 0.937 27 H 0.335 0.665 28 H 0.261 0.739 29 H 0.056 0.944 30 H 0.008 0.992 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.100 -2.247 1.711 10.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 H 0.024 0.976 4 C -0.134 4.134 5 C -0.071 4.071 6 N -0.306 5.306 7 C 0.096 3.904 8 H -0.032 1.032 9 C -0.658 4.658 10 H 0.069 0.931 11 C -0.222 4.222 12 N -0.575 5.575 13 Si 0.942 3.058 14 H -0.208 1.208 15 H -0.198 1.198 16 H -0.194 1.194 17 C -0.026 4.026 18 N -0.277 5.277 19 C -0.119 4.119 20 H 0.095 0.905 21 H 0.082 0.918 22 H 0.090 0.910 23 H 0.102 0.898 24 H 0.090 0.910 25 H 0.013 0.987 26 H 0.081 0.919 27 H 0.155 0.845 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.027 0.973 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -8.920 -2.775 1.536 9.467 hybrid contribution -0.984 1.486 0.091 1.785 sum -9.904 -1.289 1.627 10.119 Atomic orbital electron populations 1.22096 0.92045 1.03226 1.02684 1.21317 0.95981 0.93610 0.91056 0.97590 1.20597 0.94177 1.01599 0.96997 1.20907 0.95792 0.96239 0.94192 1.60379 1.12640 1.47456 1.10113 1.18833 0.94103 0.87212 0.90247 1.03205 1.22560 0.94529 1.51534 0.97223 0.93067 1.27363 1.08064 0.91844 0.94954 1.70973 1.26438 1.47707 1.12343 0.82876 0.70428 0.77796 0.74720 1.20794 1.19812 1.19385 1.22177 0.88926 0.95590 0.95933 1.60455 1.03675 1.56694 1.06922 1.22522 0.95337 0.99658 0.94359 0.90473 0.91809 0.91020 0.89763 0.91024 0.98741 0.91889 0.84498 0.92811 0.92580 0.97338 0.88924 0.92096 0.96082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 7.80 71.98 0.56 -2.97 16 2 C 0.09 3.15 2.54 45.84 0.12 3.27 16 3 H 0.01 0.25 6.98 -2.39 -0.02 0.23 16 4 C -0.10 -3.35 5.06 28.91 0.15 -3.20 16 5 C 0.06 2.49 5.26 83.96 0.44 2.93 16 6 N -0.67 -34.02 6.10 -507.99 -3.10 -37.12 16 7 C 0.21 10.97 1.53 44.98 0.07 11.04 16 8 H -0.05 -2.93 6.40 -2.38 -0.02 -2.95 16 9 C -0.62 -35.59 8.51 25.60 0.22 -35.37 16 10 H 0.05 2.90 7.68 -2.91 -0.02 2.88 16 11 C -0.02 -1.35 5.04 84.65 0.43 -0.92 16 12 N -0.94 -56.29 12.88 21.45 0.28 -56.01 16 13 Si 1.12 49.96 29.90 68.60 2.05 52.01 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 15 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 16 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 17 C 0.10 4.69 5.07 86.38 0.44 5.13 16 18 N -0.55 -21.05 4.39 -895.73 -3.93 -24.98 16 19 C 0.03 0.83 8.27 127.69 1.06 1.89 16 20 H 0.08 1.70 7.31 -2.39 -0.02 1.69 16 21 H 0.06 1.46 6.45 -2.39 -0.02 1.45 16 22 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 23 H 0.08 2.40 8.00 -2.39 -0.02 2.38 16 24 H 0.07 2.55 8.12 -2.39 -0.02 2.53 16 25 H -0.01 -0.27 7.08 -2.38 -0.02 -0.28 16 26 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.34 18.53 6.11 -89.70 -0.55 17.98 16 28 H 0.26 15.72 5.19 -92.71 -0.48 15.24 16 29 H 0.06 2.66 7.92 -2.39 -0.02 2.64 16 30 H 0.01 0.39 8.03 -2.39 -0.02 0.37 16 31 H 0.09 2.20 6.26 -2.39 -0.01 2.19 16 32 H 0.06 1.73 8.10 -2.39 -0.02 1.71 16 33 H 0.02 0.59 7.38 -2.39 -0.02 0.57 16 Total: -1.00 -64.31 246.95 -0.41 -64.72 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.82 Total: 19.58 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 3.47 Total: -18.20 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -6.76 Total: -118.12 kcal Atomic # 14 Polarization: 49.96 SS G_CDS: 2.05 Total: 52.01 kcal Total: -64.31 -0.41 -64.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218744127.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.710 kcal (2) G-P(sol) polarization free energy of solvation -64.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds