Wall clock time and date at job start Mon Mar 30 2020 02:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.00383 * 2 1 4 4 C 1.54515 * 109.07039 * 241.00538 * 2 1 3 5 5 C 1.50742 * 108.94143 * 163.46405 * 4 2 1 6 6 N 1.48069 * 112.93369 * 92.65412 * 5 4 2 7 7 C 1.47747 * 113.78952 * 318.27960 * 6 5 4 8 8 C 1.50775 * 111.91330 * 318.87874 * 7 6 5 9 9 H 1.08994 * 109.73974 * 334.96240 * 8 7 6 10 10 C 1.50696 * 109.73673 * 214.25511 * 8 7 6 11 11 H 1.07997 * 120.00489 * 247.00903 * 10 8 7 12 12 C 1.37884 * 119.99782 * 67.00657 * 10 8 7 13 13 N 1.31510 * 120.00041 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99972 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47281 * 90.00302 * 14 12 10 16 16 H 1.48501 * 109.47266 * 210.00373 * 14 12 10 17 17 H 1.48503 * 109.47252 * 330.00150 * 14 12 10 18 18 N 1.40085 * 109.07371 * 119.00029 * 2 1 3 19 19 C 1.46901 * 110.99684 * 308.67240 * 18 2 1 20 20 H 1.08996 * 109.46760 * 301.00005 * 1 2 3 21 21 H 1.08992 * 109.46908 * 60.99969 * 1 2 3 22 22 H 1.09002 * 109.47004 * 181.00114 * 1 2 3 23 23 H 1.08993 * 109.56157 * 283.30490 * 4 2 1 24 24 H 1.09006 * 109.55865 * 43.52600 * 4 2 1 25 25 H 1.09007 * 108.78994 * 213.54059 * 5 4 2 26 26 H 1.08998 * 108.79213 * 331.87605 * 5 4 2 27 27 H 1.00905 * 111.00054 * 84.34893 * 6 5 4 28 28 H 1.09005 * 108.99003 * 79.50268 * 7 6 5 29 29 H 1.08999 * 108.99011 * 198.24881 * 7 6 5 30 30 H 0.96999 * 120.00189 * 179.97438 * 13 12 10 31 31 H 1.08993 * 109.47413 * 51.24630 * 19 18 2 32 32 H 1.09004 * 109.46689 * 291.23989 * 19 18 2 33 33 H 1.09000 * 109.46644 * 171.24754 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8850 1.0305 0.0000 4 6 2.0349 -0.7079 -1.2773 5 6 3.4866 -0.3606 -1.4879 6 7 4.4096 -1.3441 -0.8769 7 6 3.9898 -1.8026 0.4634 8 6 3.4572 -0.6701 1.3043 9 1 3.8795 0.2740 0.9604 10 6 3.8203 -0.8948 2.7495 11 1 3.0469 -1.0971 3.4755 12 6 5.1402 -0.8421 3.1448 13 7 6.0821 -0.5953 2.2608 14 14 5.5905 -1.1213 4.9361 15 1 5.8384 -2.5676 5.1646 16 1 6.8170 -0.3510 5.2641 17 1 4.4741 -0.6674 5.8038 18 7 1.9878 -0.6419 1.1579 19 6 1.3499 -0.0823 2.3571 20 1 -0.3633 0.5293 0.8809 21 1 -0.3633 0.4982 -0.8988 22 1 -0.3633 -1.0275 0.0180 23 1 1.9308 -1.7867 -1.1621 24 1 1.4502 -0.3743 -2.1347 25 1 3.6842 -0.3120 -2.5588 26 1 3.6803 0.6189 -1.0508 27 1 4.5648 -2.1267 -1.4947 28 1 3.2121 -2.5582 0.3524 29 1 4.8458 -2.2484 0.9700 30 1 7.0106 -0.5579 2.5390 31 1 0.2685 -0.0713 2.2218 32 1 1.7066 0.9352 2.5171 33 1 1.6016 -0.6958 3.2222 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218744375.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:30 Heat of formation + Delta-G solvation = 24.910299 kcal Electronic energy + Delta-G solvation = -13780.966352 eV Core-core repulsion = 11649.271237 eV Total energy + Delta-G solvation = -2131.695115 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.91386 -34.48137 -33.54851 -31.18907 -27.89724 -27.48414 -25.71919 -23.15403 -22.18692 -19.57451 -18.90206 -16.35752 -15.35781 -15.31879 -14.39947 -14.12370 -13.89219 -13.36999 -12.63569 -12.41757 -11.85939 -11.58175 -11.49430 -11.25403 -11.14691 -10.86523 -10.79163 -10.53975 -10.15928 -9.87258 -9.79017 -9.42957 -8.82572 -8.43495 -7.23676 -7.01466 -5.96198 -4.04759 3.32022 3.38887 3.41101 4.42799 5.01238 5.17491 5.31530 5.36676 5.55274 5.75309 5.92497 6.02454 6.13119 6.27402 6.34888 6.40294 6.47694 6.50476 6.66544 6.83292 6.87407 6.93869 7.06936 7.33361 7.81037 7.88648 7.99891 8.21703 8.38412 8.42344 8.83739 9.05836 9.61092 11.09254 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041277 B = 0.013525 C = 0.010753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.188457 B = 2069.782170 C = 2603.348202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.105 3.895 3 H 0.014 0.986 4 C -0.142 4.142 5 C 0.063 3.937 6 N -0.692 5.692 7 C 0.090 3.910 8 C 0.227 3.773 9 H 0.019 0.981 10 C -0.527 4.527 11 H 0.070 0.930 12 C 0.063 3.937 13 N -0.871 5.871 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.275 1.275 18 N -0.562 5.562 19 C 0.040 3.960 20 H 0.056 0.944 21 H 0.046 0.954 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.320 0.680 28 H 0.008 0.992 29 H 0.085 0.915 30 H 0.260 0.740 31 H 0.044 0.956 32 H 0.014 0.986 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.084 0.022 -4.506 8.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.006 4.006 3 H 0.032 0.968 4 C -0.181 4.181 5 C -0.067 4.067 6 N -0.321 5.321 7 C -0.038 4.038 8 C 0.122 3.878 9 H 0.037 0.963 10 C -0.566 4.566 11 H 0.088 0.912 12 C -0.141 4.141 13 N -0.508 5.508 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.200 1.200 18 N -0.287 5.287 19 C -0.108 4.108 20 H 0.075 0.925 21 H 0.065 0.935 22 H 0.076 0.924 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.135 0.865 28 H 0.026 0.974 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.606 0.090 -4.319 7.893 hybrid contribution -0.111 0.092 0.696 0.711 sum -6.717 0.182 -3.623 7.634 Atomic orbital electron populations 1.22111 0.96193 1.01740 1.00687 1.20390 0.93868 0.94716 0.91674 0.96804 1.22149 0.97936 1.01361 0.96689 1.21696 0.89669 0.97947 0.97374 1.60540 1.48552 1.18240 1.04755 1.21882 0.98266 0.97415 0.86251 1.18929 0.79239 0.94479 0.95133 0.96317 1.21336 0.92564 1.49985 0.92736 0.91226 1.25007 0.96584 0.95177 0.97288 1.70067 1.00230 1.47470 1.33009 0.86611 0.77916 0.78160 0.85379 1.20678 1.21328 1.19983 1.59150 1.11798 1.56863 1.00931 1.22326 0.96215 0.97712 0.94515 0.92472 0.93468 0.92423 0.91537 0.92333 0.93097 0.91966 0.86498 0.97391 0.89681 0.93007 0.93711 0.96732 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.54 37.16 0.32 -2.01 16 2 C 0.10 1.99 2.07 -70.44 -0.15 1.85 16 3 H 0.01 0.29 7.59 -51.93 -0.39 -0.10 16 4 C -0.14 -2.49 5.02 -27.07 -0.14 -2.62 16 5 C 0.06 1.20 6.01 -4.31 -0.03 1.17 16 6 N -0.69 -14.87 6.93 -114.71 -0.80 -15.67 16 7 C 0.09 2.19 5.35 -4.47 -0.02 2.17 16 8 C 0.23 5.80 1.73 -69.55 -0.12 5.68 16 9 H 0.02 0.56 6.77 -51.93 -0.35 0.21 16 10 C -0.53 -14.36 7.68 -34.44 -0.26 -14.62 16 11 H 0.07 1.86 5.23 -52.49 -0.27 1.58 16 12 C 0.06 1.74 5.06 -17.82 -0.09 1.65 16 13 N -0.87 -25.11 12.23 55.43 0.68 -24.44 16 14 Si 0.89 21.20 29.54 -169.99 -5.02 16.17 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 18 N -0.56 -12.36 4.04 -233.04 -0.94 -13.30 16 19 C 0.04 0.81 8.35 60.07 0.50 1.32 16 20 H 0.06 0.86 5.93 -51.93 -0.31 0.55 16 21 H 0.05 0.63 8.12 -51.93 -0.42 0.21 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.07 1.23 7.19 -51.93 -0.37 0.86 16 24 H 0.06 0.87 8.02 -51.93 -0.42 0.45 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.06 1.32 6.52 -51.93 -0.34 0.99 16 27 H 0.32 6.01 8.91 -39.29 -0.35 5.66 16 28 H 0.01 0.19 7.20 -51.93 -0.37 -0.18 16 29 H 0.09 2.32 6.56 -51.93 -0.34 1.98 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.04 0.78 5.46 -51.93 -0.28 0.50 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 1.67 5.59 -51.93 -0.29 1.38 16 LS Contribution 245.69 15.07 3.70 3.70 Total: -1.00 -28.68 245.69 -7.28 -35.96 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.92 Total: 2.99 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 0.01 Total: -5.43 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -1.06 Total: -53.40 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.68 -7.28 -35.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218744375.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.871 kcal (2) G-P(sol) polarization free energy of solvation -28.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds