Wall clock time and date at job start Mon Mar 30 2020 02:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 108.75663 * 2 1 4 4 C 1.50742 * 108.78896 * 118.34656 * 2 1 3 5 5 C 1.54517 * 108.95113 * 213.42526 * 4 2 1 6 6 N 1.40081 * 111.50560 * 283.99496 * 5 4 2 7 7 C 1.47682 * 114.57046 * 61.45416 * 6 5 4 8 8 C 1.50772 * 108.09771 * 278.67811 * 7 6 5 9 9 H 1.09002 * 108.99320 * 334.06427 * 8 7 6 10 10 C 1.50699 * 108.99393 * 215.24079 * 8 7 6 11 11 H 1.08002 * 119.99808 * 326.21530 * 10 8 7 12 12 C 1.37881 * 120.00163 * 145.94268 * 10 8 7 13 13 N 1.31507 * 120.00141 * 0.26831 * 12 10 8 14 14 Si 1.86801 * 120.00026 * 180.27825 * 12 10 8 15 15 H 1.48501 * 109.47237 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47368 * 119.99575 * 14 12 10 17 17 H 1.48501 * 109.46788 * 239.99619 * 14 12 10 18 18 N 1.47746 * 111.85632 * 94.65489 * 8 7 6 19 19 C 1.46899 * 111.00227 * 84.89961 * 18 8 7 20 20 H 1.09001 * 109.47570 * 301.64754 * 1 2 3 21 21 H 1.09006 * 109.47398 * 61.64981 * 1 2 3 22 22 H 1.09003 * 109.47158 * 181.65085 * 1 2 3 23 23 H 1.09003 * 109.55645 * 93.58981 * 4 2 1 24 24 H 1.09000 * 109.64907 * 333.32118 * 4 2 1 25 25 H 1.08995 * 109.07249 * 163.47275 * 5 4 2 26 26 H 1.09001 * 109.01426 * 44.48201 * 5 4 2 27 27 H 1.00894 * 111.00000 * 294.75257 * 6 5 4 28 28 H 1.09000 * 109.73952 * 159.02247 * 7 6 5 29 29 H 1.09003 * 109.73835 * 38.32882 * 7 6 5 30 30 H 0.96999 * 120.00205 * 180.02562 * 13 12 10 31 31 H 1.08992 * 109.47069 * 66.03806 * 19 18 8 32 32 H 1.08996 * 109.46866 * 186.04018 * 19 18 8 33 33 H 1.09001 * 109.47215 * 306.03921 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8804 1.0321 0.0000 4 6 2.0154 -0.6776 1.2560 5 6 3.3318 -0.0081 1.7106 6 7 4.4136 -0.4113 0.9172 7 6 4.2917 -0.0598 -0.5120 8 6 3.4174 -1.0934 -1.1756 9 1 3.4808 -2.0253 -0.6137 10 6 3.9169 -1.3315 -2.5773 11 1 4.3489 -0.5185 -3.1419 12 6 3.8277 -2.5885 -3.1368 13 7 3.3017 -3.5785 -2.4492 14 14 4.4540 -2.8854 -4.8715 15 1 4.9951 -1.6185 -5.4259 16 1 5.5272 -3.9113 -4.8415 17 1 3.3371 -3.3621 -5.7261 18 7 2.0052 -0.6630 -1.2351 19 6 1.7609 0.1794 -2.4135 20 1 -0.3634 0.5392 0.8748 21 1 -0.3634 0.4880 -0.9044 22 1 -0.3634 -1.0273 0.0296 23 1 2.1939 -1.7340 1.0550 24 1 1.2651 -0.5770 2.0402 25 1 3.5298 -0.2795 2.7474 26 1 3.2224 1.0741 1.6405 27 1 4.5995 -1.3962 1.0328 28 1 5.2779 -0.0589 -0.9762 29 1 3.8367 0.9257 -0.6111 30 1 3.2393 -4.4629 -2.8427 31 1 1.8892 -0.4150 -3.3180 32 1 0.7438 0.5697 -2.3764 33 1 2.4682 1.0087 -2.4203 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218744436.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:32 Heat of formation + Delta-G solvation = 8.972915 kcal Electronic energy + Delta-G solvation = -13796.310486 eV Core-core repulsion = 11663.924274 eV Total energy + Delta-G solvation = -2132.386212 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.90208 -34.51445 -33.49810 -31.43723 -27.91681 -27.29488 -25.27112 -23.36213 -21.84921 -20.79574 -18.28384 -16.33045 -15.72940 -14.89293 -14.77361 -14.04860 -13.97506 -13.17837 -12.43473 -12.24439 -12.19401 -11.66883 -11.52171 -11.29945 -11.00991 -10.89528 -10.67254 -10.55590 -10.43632 -10.13904 -9.89478 -9.31108 -9.10525 -8.53530 -7.67647 -6.67995 -6.03095 -4.09379 3.27513 3.36579 3.39695 4.40167 4.92094 5.10883 5.32360 5.50806 5.63507 5.79722 5.90392 6.04555 6.13835 6.27712 6.30512 6.43370 6.48474 6.54131 6.61283 6.73107 6.77597 6.88244 7.02870 7.19173 7.54038 7.79373 8.00636 8.00973 8.19456 8.67557 8.73791 9.03710 9.55186 11.04627 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.041295 B = 0.012961 C = 0.011464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.887934 B = 2159.781570 C = 2441.922374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.082 3.918 3 H 0.018 0.982 4 C -0.160 4.160 5 C 0.079 3.921 6 N -0.708 5.708 7 C 0.046 3.954 8 C 0.176 3.824 9 H 0.070 0.930 10 C -0.518 4.518 11 H 0.054 0.946 12 C 0.078 3.922 13 N -0.872 5.872 14 Si 0.887 3.113 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 N -0.533 5.533 19 C 0.056 3.944 20 H 0.042 0.958 21 H 0.048 0.952 22 H 0.057 0.943 23 H 0.075 0.925 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.343 0.657 28 H 0.074 0.926 29 H 0.045 0.955 30 H 0.260 0.740 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.304 5.156 4.643 7.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 H 0.036 0.964 4 C -0.200 4.200 5 C -0.053 4.053 6 N -0.338 5.338 7 C -0.083 4.083 8 C 0.070 3.930 9 H 0.088 0.912 10 C -0.558 4.558 11 H 0.072 0.928 12 C -0.128 4.128 13 N -0.508 5.508 14 Si 0.715 3.285 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 N -0.259 5.259 19 C -0.092 4.092 20 H 0.061 0.939 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.093 0.907 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.163 0.837 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -2.276 5.122 4.744 7.343 hybrid contribution -0.023 -0.136 -1.196 1.204 sum -2.299 4.986 3.548 6.537 Atomic orbital electron populations 1.21910 0.96211 1.01608 0.99943 1.21266 0.94493 0.95105 0.91814 0.96368 1.22451 0.98927 1.01951 0.96667 1.20967 0.88857 0.99025 0.96492 1.57974 1.41310 1.23344 1.11124 1.22546 1.01327 0.98888 0.85586 1.19932 0.81788 0.93851 0.97393 0.91237 1.21017 1.40198 0.95010 0.99532 0.92804 1.24969 0.94172 0.96269 0.97342 1.69963 1.43080 1.01048 1.36740 0.86633 0.78567 0.78282 0.85051 1.19740 1.20981 1.20993 1.62499 1.24012 1.39991 0.99413 1.21963 0.96319 0.94884 0.96052 0.93894 0.93267 0.92409 0.90658 0.92294 0.92228 0.92685 0.83707 0.90763 0.93598 0.93014 0.90753 0.94964 0.97885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.01 37.15 0.33 -2.03 16 2 C 0.08 1.57 1.81 -68.23 -0.12 1.45 16 3 H 0.02 0.36 6.40 -51.93 -0.33 0.03 16 4 C -0.16 -2.84 5.18 -27.07 -0.14 -2.98 16 5 C 0.08 1.33 6.04 -6.55 -0.04 1.29 16 6 N -0.71 -13.46 6.40 -118.28 -0.76 -14.21 16 7 C 0.05 0.99 5.71 -4.51 -0.03 0.96 16 8 C 0.18 4.27 1.88 -69.52 -0.13 4.14 16 9 H 0.07 1.89 5.92 -51.93 -0.31 1.59 16 10 C -0.52 -13.73 5.84 -34.44 -0.20 -13.93 16 11 H 0.05 1.43 7.81 -52.49 -0.41 1.02 16 12 C 0.08 2.11 5.46 -17.82 -0.10 2.01 16 13 N -0.87 -24.86 12.81 55.43 0.71 -24.16 16 14 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 18 N -0.53 -12.18 4.62 -229.42 -1.06 -13.24 16 19 C 0.06 1.22 8.49 60.06 0.51 1.73 16 20 H 0.04 0.62 8.08 -51.93 -0.42 0.20 16 21 H 0.05 0.82 6.39 -51.93 -0.33 0.49 16 22 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 23 H 0.07 1.53 7.19 -51.93 -0.37 1.16 16 24 H 0.06 0.91 7.69 -51.93 -0.40 0.51 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.92 7.59 -51.93 -0.39 0.53 16 27 H 0.34 6.59 8.15 -39.30 -0.32 6.27 16 28 H 0.07 1.65 7.72 -51.93 -0.40 1.25 16 29 H 0.05 0.99 6.27 -51.93 -0.33 0.66 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.07 1.77 6.99 -51.93 -0.36 1.40 16 32 H 0.03 0.62 6.22 -51.93 -0.32 0.30 16 33 H 0.00 0.06 7.61 -51.93 -0.40 -0.34 16 LS Contribution 248.72 15.07 3.75 3.75 Total: -1.00 -27.60 248.72 -7.37 -34.97 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -5.08 Total: 4.34 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 0.09 Total: -7.35 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -1.11 Total: -51.61 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -27.60 -7.37 -34.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218744436.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.939 kcal (2) G-P(sol) polarization free energy of solvation -27.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds