Wall clock time and date at job start Mon Mar 30 2020 02:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 108.93729 * 2 1 4 4 C 1.53696 * 108.95761 * 241.24928 * 2 1 3 5 5 N 1.48060 * 112.47360 * 197.96448 * 4 2 1 6 6 C 1.44575 * 113.86171 * 318.32010 * 5 4 2 7 7 H 1.09001 * 109.56620 * 334.41172 * 6 5 4 8 8 C 1.50703 * 109.57297 * 214.03726 * 6 5 4 9 9 H 1.08005 * 119.99506 * 275.22691 * 8 6 5 10 10 C 1.37868 * 119.99899 * 95.23806 * 8 6 5 11 11 N 1.31519 * 120.00001 * 183.96479 * 10 8 6 12 12 Si 1.86802 * 120.00469 * 3.95666 * 10 8 6 13 13 H 1.48498 * 109.46680 * 85.21544 * 12 10 8 14 14 H 1.48499 * 109.47044 * 205.21493 * 12 10 8 15 15 H 1.48497 * 109.47085 * 325.21748 * 12 10 8 16 16 C 1.54198 * 108.85632 * 94.22035 * 6 5 4 17 17 N 1.40017 * 112.07979 * 281.19616 * 16 6 5 18 18 C 1.46902 * 110.99867 * 188.09730 * 17 16 6 19 19 C 1.47905 * 114.07001 * 61.81249 * 17 16 6 20 20 H 1.08999 * 109.46774 * 178.74918 * 1 2 3 21 21 H 1.09004 * 109.46812 * 298.74670 * 1 2 3 22 22 H 1.08996 * 109.46962 * 58.75013 * 1 2 3 23 23 H 1.09009 * 108.88068 * 77.19164 * 4 2 1 24 24 H 1.09004 * 108.88154 * 318.74261 * 4 2 1 25 25 H 1.00903 * 111.00119 * 192.19302 * 5 4 2 26 26 H 0.97000 * 120.00290 * 179.97438 * 11 10 8 27 27 H 1.09005 * 108.96018 * 41.86098 * 16 6 5 28 28 H 1.08997 * 108.96164 * 160.52171 * 16 6 5 29 29 H 1.09002 * 109.47305 * 292.02895 * 18 17 16 30 30 H 1.09009 * 109.47233 * 52.02664 * 18 17 16 31 31 H 1.09001 * 109.46996 * 172.02213 * 18 17 16 32 32 H 1.08998 * 109.63443 * 160.36435 * 19 17 16 33 33 H 1.08993 * 109.63679 * 39.76704 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8837 1.0310 0.0000 4 6 2.0293 -0.6992 -1.2744 5 7 3.4440 -1.1232 -1.1700 6 6 4.3025 -0.1460 -0.5390 7 1 3.8784 0.8498 -0.6679 8 6 5.6727 -0.1990 -1.1642 9 1 6.3995 -0.9160 -0.8120 10 6 5.9983 0.6681 -2.1855 11 7 7.1655 0.5706 -2.7837 12 14 4.7818 1.9811 -2.7198 13 1 4.9328 3.1776 -1.8534 14 1 5.0465 2.3559 -4.1321 15 1 3.3990 1.4535 -2.5985 16 6 4.4076 -0.4719 0.9645 17 7 3.2808 -0.0427 1.6762 18 6 3.4850 -0.1891 3.1235 19 6 2.0182 -0.6854 1.2515 20 1 -0.3633 -1.0274 -0.0224 21 1 -0.3633 0.4943 0.9011 22 1 -0.3633 0.5331 -0.8785 23 1 1.9276 -0.0136 -2.1158 24 1 1.4106 -1.5771 -1.4606 25 1 3.8074 -1.3955 -2.0711 26 1 7.3945 1.1804 -3.5025 27 1 4.5141 -1.5499 1.0866 28 1 5.2918 0.0180 1.3721 29 1 3.5285 -1.2479 3.3791 30 1 4.4205 0.2922 3.4090 31 1 2.6578 0.2797 3.6564 32 1 1.2722 -0.5835 2.0396 33 1 2.1956 -1.7409 1.0455 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218744633.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:20 Heat of formation + Delta-G solvation = 4.158268 kcal Electronic energy + Delta-G solvation = -13606.197687 eV Core-core repulsion = 11473.602697 eV Total energy + Delta-G solvation = -2132.594991 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.77061 -34.78489 -33.91258 -31.85489 -28.43138 -26.67058 -25.71014 -23.99822 -22.19535 -19.83925 -18.72872 -17.04233 -15.49327 -15.01798 -14.84240 -14.23447 -13.91170 -13.59491 -12.88113 -12.73558 -12.35509 -12.28022 -11.87054 -11.57007 -11.28070 -10.97221 -10.80540 -10.44964 -10.35933 -10.07633 -9.84879 -9.73724 -9.08487 -8.67855 -7.56633 -7.16597 -6.16116 -4.18750 3.24778 3.32837 3.35278 4.34756 4.57745 4.99426 5.22604 5.36126 5.41573 5.67937 5.75974 5.81896 5.87744 5.97884 6.08596 6.16169 6.18650 6.23226 6.39536 6.48638 6.54392 6.55933 6.82921 6.83893 7.19737 7.53636 7.75902 8.08343 8.25901 8.58494 8.77799 8.93525 9.47363 10.96225 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035316 B = 0.014161 C = 0.011728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.661673 B = 1976.801643 C = 2386.855833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 H 0.075 0.925 4 C 0.065 3.935 5 N -0.705 5.705 6 C 0.194 3.806 7 H 0.018 0.982 8 C -0.517 4.517 9 H 0.076 0.924 10 C 0.076 3.924 11 N -0.892 5.892 12 Si 0.876 3.124 13 H -0.274 1.274 14 H -0.290 1.290 15 H -0.265 1.265 16 C 0.087 3.913 17 N -0.560 5.560 18 C 0.033 3.967 19 C 0.080 3.920 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.018 0.982 24 H 0.053 0.947 25 H 0.345 0.655 26 H 0.265 0.735 27 H 0.016 0.984 28 H 0.065 0.935 29 H 0.017 0.983 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.123 -0.649 6.211 12.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.093 0.907 4 C -0.065 4.065 5 N -0.339 5.339 6 C 0.085 3.915 7 H 0.036 0.964 8 C -0.557 4.557 9 H 0.095 0.905 10 C -0.127 4.127 11 N -0.530 5.530 12 Si 0.704 3.296 13 H -0.200 1.200 14 H -0.217 1.217 15 H -0.190 1.190 16 C -0.043 4.043 17 N -0.284 5.284 18 C -0.115 4.115 19 C -0.047 4.047 20 H 0.071 0.929 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.036 0.964 24 H 0.072 0.928 25 H 0.165 0.835 26 H 0.075 0.925 27 H 0.034 0.966 28 H 0.083 0.917 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.134 -0.420 6.537 12.917 hybrid contribution -0.333 0.580 -0.946 1.159 sum -11.467 0.161 5.591 12.758 Atomic orbital electron populations 1.21833 0.95536 1.01298 1.01213 1.20990 0.94401 1.00996 0.94897 0.90686 1.22223 0.91893 0.97177 0.95173 1.59817 1.00120 1.45408 1.28568 1.19233 0.92149 0.90046 0.90034 0.96411 1.21098 0.97086 1.19579 1.17910 0.90548 1.25090 0.95082 0.96967 0.95604 1.69906 1.21478 1.37710 1.23879 0.86888 0.82241 0.82887 0.77591 1.19994 1.21671 1.18996 1.21093 0.90477 0.96976 0.95740 1.59339 1.04211 1.61228 1.03592 1.22277 1.01529 0.98768 0.88907 1.21713 0.90539 0.96875 0.95593 0.92917 0.92863 0.93057 0.96416 0.92830 0.83470 0.92494 0.96607 0.91665 0.96419 0.91843 0.92450 0.92290 0.93514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.85 37.16 0.33 -1.54 16 2 C -0.09 -1.61 2.25 -91.36 -0.21 -1.82 16 3 H 0.07 1.46 7.23 -51.93 -0.38 1.09 16 4 C 0.06 1.22 5.87 -2.82 -0.02 1.20 16 5 N -0.70 -15.50 6.02 -107.60 -0.65 -16.14 16 6 C 0.19 4.65 1.80 -69.48 -0.12 4.53 16 7 H 0.02 0.46 4.14 -51.93 -0.22 0.24 16 8 C -0.52 -14.41 8.63 -34.44 -0.30 -14.71 16 9 H 0.08 2.33 8.06 -52.48 -0.42 1.90 16 10 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 11 N -0.89 -26.85 13.96 55.43 0.77 -26.08 16 12 Si 0.88 21.66 26.98 -169.99 -4.59 17.08 16 13 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.27 -6.34 5.83 56.52 0.33 -6.01 16 16 C 0.09 1.90 4.43 -6.75 -0.03 1.87 16 17 N -0.56 -10.55 4.32 -248.07 -1.07 -11.62 16 18 C 0.03 0.51 9.45 60.07 0.57 1.08 16 19 C 0.08 1.36 4.85 -4.37 -0.02 1.34 16 20 H 0.05 0.64 8.11 -51.93 -0.42 0.22 16 21 H 0.05 0.64 8.02 -51.93 -0.42 0.22 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.02 0.35 7.14 -51.92 -0.37 -0.02 16 24 H 0.05 0.91 7.95 -51.93 -0.41 0.50 16 25 H 0.34 7.89 8.25 -39.29 -0.32 7.56 16 26 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.02 0.36 8.07 -51.93 -0.42 -0.06 16 28 H 0.07 1.46 7.69 -51.93 -0.40 1.06 16 29 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.94 7.89 -51.92 -0.41 0.53 16 31 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 32 H 0.06 0.86 7.34 -51.93 -0.38 0.48 16 33 H 0.05 0.85 7.57 -51.93 -0.39 0.46 16 LS Contribution 253.04 15.07 3.81 3.81 Total: -1.00 -29.29 253.04 -7.05 -36.34 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.43 Total: 2.60 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 0.10 Total: -5.98 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.95 Total: -53.84 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.59 Total: 17.08 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.29 -7.05 -36.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218744633.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.494 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds