Wall clock time and date at job start Mon Mar 30 2020 02:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 108.93729 * 2 1 4 4 C 1.53696 * 108.95761 * 241.24928 * 2 1 3 5 5 N 1.48060 * 112.47360 * 197.96448 * 4 2 1 6 6 C 1.44575 * 113.86171 * 318.32010 * 5 4 2 7 7 H 1.09001 * 109.56620 * 334.41172 * 6 5 4 8 8 C 1.50703 * 109.57297 * 214.03726 * 6 5 4 9 9 H 1.08005 * 119.99506 * 275.22691 * 8 6 5 10 10 C 1.37868 * 119.99899 * 95.23806 * 8 6 5 11 11 N 1.31519 * 120.00001 * 183.96479 * 10 8 6 12 12 Si 1.86802 * 120.00469 * 3.95666 * 10 8 6 13 13 H 1.48498 * 109.46680 * 85.21544 * 12 10 8 14 14 H 1.48499 * 109.47044 * 205.21493 * 12 10 8 15 15 H 1.48497 * 109.47085 * 325.21748 * 12 10 8 16 16 C 1.54198 * 108.85632 * 94.22035 * 6 5 4 17 17 N 1.40017 * 112.07979 * 281.19616 * 16 6 5 18 18 C 1.46902 * 110.99867 * 188.09730 * 17 16 6 19 19 C 1.47905 * 114.07001 * 61.81249 * 17 16 6 20 20 H 1.08999 * 109.46774 * 178.74918 * 1 2 3 21 21 H 1.09004 * 109.46812 * 298.74670 * 1 2 3 22 22 H 1.08996 * 109.46962 * 58.75013 * 1 2 3 23 23 H 1.09009 * 108.88068 * 77.19164 * 4 2 1 24 24 H 1.09004 * 108.88154 * 318.74261 * 4 2 1 25 25 H 1.00903 * 111.00119 * 192.19302 * 5 4 2 26 26 H 0.97000 * 120.00290 * 179.97438 * 11 10 8 27 27 H 1.09005 * 108.96018 * 41.86098 * 16 6 5 28 28 H 1.08997 * 108.96164 * 160.52171 * 16 6 5 29 29 H 1.09002 * 109.47305 * 292.02895 * 18 17 16 30 30 H 1.09009 * 109.47233 * 52.02664 * 18 17 16 31 31 H 1.09001 * 109.46996 * 172.02213 * 18 17 16 32 32 H 1.08998 * 109.63443 * 160.36435 * 19 17 16 33 33 H 1.08993 * 109.63679 * 39.76704 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8837 1.0310 0.0000 4 6 2.0293 -0.6992 -1.2744 5 7 3.4440 -1.1232 -1.1700 6 6 4.3025 -0.1460 -0.5390 7 1 3.8784 0.8498 -0.6679 8 6 5.6727 -0.1990 -1.1642 9 1 6.3995 -0.9160 -0.8120 10 6 5.9983 0.6681 -2.1855 11 7 7.1655 0.5706 -2.7837 12 14 4.7818 1.9811 -2.7198 13 1 4.9328 3.1776 -1.8534 14 1 5.0465 2.3559 -4.1321 15 1 3.3990 1.4535 -2.5985 16 6 4.4076 -0.4719 0.9645 17 7 3.2808 -0.0427 1.6762 18 6 3.4850 -0.1891 3.1235 19 6 2.0182 -0.6854 1.2515 20 1 -0.3633 -1.0274 -0.0224 21 1 -0.3633 0.4943 0.9011 22 1 -0.3633 0.5331 -0.8785 23 1 1.9276 -0.0136 -2.1158 24 1 1.4106 -1.5771 -1.4606 25 1 3.8074 -1.3955 -2.0711 26 1 7.3945 1.1804 -3.5025 27 1 4.5141 -1.5499 1.0866 28 1 5.2918 0.0180 1.3721 29 1 3.5285 -1.2479 3.3791 30 1 4.4205 0.2922 3.4090 31 1 2.6578 0.2797 3.6564 32 1 1.2722 -0.5835 2.0396 33 1 2.1956 -1.7409 1.0455 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218744633.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:20 Heat of formation + Delta-G solvation = -18.128092 kcal Electronic energy + Delta-G solvation = -13607.164096 eV Core-core repulsion = 11473.602697 eV Total energy + Delta-G solvation = -2133.561400 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.31546 -36.35974 -35.58759 -33.85711 -30.10544 -27.93067 -27.45109 -25.58897 -23.78224 -21.45563 -20.31961 -19.12999 -17.23776 -16.55508 -16.41396 -15.87288 -15.53887 -15.30291 -14.77396 -14.03139 -13.96984 -13.56289 -13.29669 -13.03459 -12.88985 -12.73332 -12.33953 -11.96573 -11.89187 -11.76512 -11.56735 -11.31897 -11.15877 -10.85302 -9.06052 -8.94028 -8.37681 -6.44685 1.26861 1.29500 1.38729 2.25338 2.92602 3.17691 3.70372 3.95953 4.10136 4.27217 4.39086 4.54409 4.63460 4.65672 4.75681 4.81410 4.85980 4.91354 4.98276 5.00897 5.03178 5.22092 5.30888 5.35113 5.47416 5.51559 6.14880 6.35973 6.50265 6.61285 6.73638 6.92598 7.25151 8.78405 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035316 B = 0.014161 C = 0.011728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.661673 B = 1976.801643 C = 2386.855833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.094 4.094 3 H 0.051 0.949 4 C 0.061 3.939 5 N -0.708 5.708 6 C 0.202 3.798 7 H 0.010 0.990 8 C -0.522 4.522 9 H 0.034 0.966 10 C 0.026 3.974 11 N -0.937 5.937 12 Si 0.942 3.058 13 H -0.271 1.271 14 H -0.285 1.285 15 H -0.252 1.252 16 C 0.102 3.898 17 N -0.574 5.574 18 C 0.033 3.967 19 C 0.082 3.918 20 H 0.067 0.933 21 H 0.070 0.930 22 H 0.055 0.945 23 H 0.009 0.991 24 H 0.078 0.922 25 H 0.337 0.663 26 H 0.268 0.732 27 H 0.002 0.998 28 H 0.049 0.951 29 H 0.024 0.976 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.004 -0.125 7.071 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.114 4.114 3 H 0.070 0.930 4 C -0.067 4.067 5 N -0.341 5.341 6 C 0.093 3.907 7 H 0.027 0.973 8 C -0.562 4.562 9 H 0.053 0.947 10 C -0.174 4.174 11 N -0.577 5.577 12 Si 0.767 3.233 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.177 1.177 16 C -0.028 4.028 17 N -0.298 5.298 18 C -0.114 4.114 19 C -0.045 4.045 20 H 0.086 0.914 21 H 0.089 0.911 22 H 0.075 0.925 23 H 0.027 0.973 24 H 0.096 0.904 25 H 0.156 0.844 26 H 0.078 0.922 27 H 0.020 0.980 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -14.038 0.095 7.421 15.879 hybrid contribution 0.594 0.343 -1.165 1.352 sum -13.445 0.439 6.255 14.835 Atomic orbital electron populations 1.21764 0.92087 1.02672 1.02450 1.21026 0.97267 0.99124 0.93966 0.93035 1.22408 0.89895 0.98272 0.96166 1.59735 1.01670 1.44697 1.27974 1.19051 0.90171 0.90104 0.91411 0.97252 1.21280 0.98355 1.18509 1.18028 0.94720 1.25847 0.96775 0.99118 0.95646 1.70035 1.23593 1.39120 1.24906 0.85841 0.80370 0.79885 0.77221 1.19667 1.21120 1.17659 1.20760 0.91540 0.95854 0.94676 1.59298 1.03751 1.61437 1.05304 1.22359 1.02772 0.99564 0.86724 1.21797 0.90215 0.95872 0.96601 0.91406 0.91068 0.92539 0.97262 0.90384 0.84434 0.92243 0.97980 0.93286 0.95733 0.91991 0.89608 0.88966 0.94683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.85 71.98 0.64 -2.28 16 2 C -0.09 -2.97 2.25 -11.27 -0.03 -2.99 16 3 H 0.05 1.88 7.23 -2.39 -0.02 1.86 16 4 C 0.06 2.18 5.87 86.31 0.51 2.68 16 5 N -0.71 -30.74 6.02 -494.34 -2.98 -33.72 16 6 C 0.20 9.72 1.80 45.01 0.08 9.80 16 7 H 0.01 0.49 4.14 -2.39 -0.01 0.48 16 8 C -0.52 -30.05 8.63 25.60 0.22 -29.83 16 9 H 0.03 2.23 8.06 -2.91 -0.02 2.20 16 10 C 0.03 1.49 5.47 84.65 0.46 1.95 16 11 N -0.94 -57.97 13.96 21.44 0.30 -57.67 16 12 Si 0.94 45.03 26.98 68.60 1.85 46.88 16 13 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 15 H -0.25 -11.43 5.83 99.48 0.58 -10.85 16 16 C 0.10 4.47 4.43 87.95 0.39 4.86 16 17 N -0.57 -20.55 4.32 -938.77 -4.06 -24.61 16 18 C 0.03 0.93 9.45 127.69 1.21 2.13 16 19 C 0.08 2.53 4.85 85.40 0.41 2.94 16 20 H 0.07 1.32 8.11 -2.39 -0.02 1.30 16 21 H 0.07 1.35 8.02 -2.39 -0.02 1.33 16 22 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.01 0.34 7.14 -2.38 -0.02 0.33 16 24 H 0.08 2.41 7.95 -2.39 -0.02 2.39 16 25 H 0.34 15.44 8.25 -89.69 -0.74 14.70 16 26 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 27 H 0.00 0.10 8.07 -2.38 -0.02 0.08 16 28 H 0.05 2.25 7.69 -2.39 -0.02 2.23 16 29 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 1.73 7.89 -2.38 -0.02 1.71 16 31 H 0.09 1.93 8.07 -2.39 -0.02 1.91 16 32 H 0.09 2.25 7.34 -2.39 -0.02 2.24 16 33 H 0.03 1.18 7.57 -2.39 -0.02 1.16 16 Total: -1.00 -64.14 253.04 -0.78 -64.92 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.21 Total: 14.92 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 3.89 Total: -10.73 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -6.74 Total: -116.00 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.85 Total: 46.88 kcal Total: -64.14 -0.78 -64.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218744633.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.794 kcal (2) G-P(sol) polarization free energy of solvation -64.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds