Wall clock time and date at job start Mon Mar 30 2020 02:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.55235 * 2 1 4 4 C 1.54509 * 109.55826 * 239.79190 * 2 1 3 5 5 N 1.40087 * 111.50527 * 164.04544 * 4 2 1 6 6 C 1.47683 * 114.57320 * 61.45107 * 5 4 2 7 7 H 1.08991 * 109.74064 * 38.32790 * 6 5 4 8 8 C 1.50697 * 109.77762 * 159.00788 * 6 5 4 9 9 H 1.08006 * 119.99977 * 118.66042 * 8 6 5 10 10 C 1.37879 * 119.99941 * 298.66406 * 8 6 5 11 11 N 1.31507 * 120.00064 * 0.02562 * 10 8 6 12 12 Si 1.86803 * 119.99910 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47273 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46640 * 120.00027 * 12 10 8 15 15 H 1.48497 * 109.47173 * 239.99720 * 12 10 8 16 16 C 1.50776 * 108.09478 * 278.67770 * 6 5 4 17 17 N 1.47755 * 111.91433 * 94.61137 * 16 6 5 18 18 C 1.46901 * 110.99881 * 84.94155 * 17 16 6 19 19 C 1.48070 * 113.78682 * 318.87919 * 17 16 6 20 20 H 1.09000 * 109.46955 * 180.21247 * 1 2 3 21 21 H 1.08999 * 109.47029 * 300.20979 * 1 2 3 22 22 H 1.08997 * 109.47025 * 60.21269 * 1 2 3 23 23 H 1.08995 * 109.07968 * 43.51848 * 4 2 1 24 24 H 1.08996 * 109.07463 * 284.56166 * 4 2 1 25 25 H 1.00900 * 110.99904 * 188.15475 * 5 4 2 26 26 H 0.97000 * 120.00152 * 180.02562 * 11 10 8 27 27 H 1.08999 * 108.99840 * 215.23650 * 16 6 5 28 28 H 1.09002 * 108.99418 * 333.99003 * 16 6 5 29 29 H 1.09004 * 109.47157 * 56.04284 * 18 17 16 30 30 H 1.08996 * 109.47479 * 176.04661 * 18 17 16 31 31 H 1.09002 * 109.47046 * 296.04856 * 18 17 16 32 32 H 1.08996 * 108.79063 * 197.39321 * 19 17 16 33 33 H 1.09002 * 108.69425 * 79.11217 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0473 -0.7325 -1.2582 5 7 3.4000 -0.4553 -1.4941 6 6 4.3119 -0.8823 -0.4138 7 1 3.9791 -1.8372 -0.0071 8 6 5.7124 -1.0193 -0.9530 9 1 6.5070 -0.4059 -0.5544 10 6 5.9794 -1.9277 -1.9554 11 7 5.0118 -2.6742 -2.4411 12 14 7.7153 -2.0970 -2.6243 13 1 8.6136 -1.1505 -1.9154 14 1 8.1943 -3.4866 -2.4118 15 1 7.7183 -1.7891 -4.0770 16 6 4.2829 0.1691 0.6665 17 7 3.3135 -0.1612 1.7315 18 6 3.9147 -1.0523 2.7327 19 6 2.0368 -0.7155 1.2262 20 1 -0.3633 -1.0277 0.0038 21 1 -0.3633 0.5171 0.8881 22 1 -0.3633 0.5105 -0.8919 23 1 1.4627 -0.4143 -2.1213 24 1 1.9225 -1.8067 -1.1216 25 1 3.6953 -0.8268 -2.3846 26 1 5.1997 -3.3135 -3.1460 27 1 5.2768 0.2542 1.1056 28 1 4.0096 1.1264 0.2225 29 1 4.8172 -0.5913 3.1342 30 1 3.2035 -1.2232 3.5409 31 1 4.1696 -2.0037 2.2658 32 1 1.2856 -0.6400 2.0123 33 1 2.1849 -1.7676 0.9826 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218744742.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:25 Heat of formation + Delta-G solvation = 0.630220 kcal Electronic energy + Delta-G solvation = -13624.618332 eV Core-core repulsion = 11491.870353 eV Total energy + Delta-G solvation = -2132.747978 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.64557 -34.32785 -33.83815 -31.57446 -28.51101 -26.46445 -25.36968 -23.62775 -22.44320 -19.56588 -18.66385 -16.81692 -15.46284 -14.75053 -14.37824 -14.14034 -13.83663 -13.74761 -12.46015 -12.44352 -12.23979 -11.89853 -11.69341 -11.45736 -11.00304 -10.98473 -10.70244 -10.45364 -10.33862 -10.06519 -9.85688 -9.51809 -9.11690 -8.70571 -7.50367 -6.77302 -6.14527 -4.21586 3.23908 3.32423 3.36910 4.34256 4.67381 5.09333 5.38839 5.48197 5.57972 5.84359 5.95359 6.07633 6.13789 6.17126 6.27019 6.33497 6.39716 6.45702 6.56983 6.61477 6.72669 6.88307 7.01953 7.11299 7.48798 7.71743 7.80083 7.88179 8.22192 8.76998 8.95793 9.22337 9.46342 10.92406 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043174 B = 0.011937 C = 0.010107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.379432 B = 2345.162183 C = 2769.596029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.097 4.097 3 H 0.082 0.918 4 C 0.092 3.908 5 N -0.701 5.701 6 C 0.199 3.801 7 H 0.001 0.999 8 C -0.510 4.510 9 H 0.062 0.938 10 C 0.063 3.937 11 N -0.898 5.898 12 Si 0.898 3.102 13 H -0.271 1.271 14 H -0.285 1.285 15 H -0.283 1.283 16 C 0.067 3.933 17 N -0.558 5.558 18 C 0.031 3.969 19 C 0.070 3.930 20 H 0.048 0.952 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.000 1.000 25 H 0.361 0.639 26 H 0.263 0.737 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.025 0.975 32 H 0.057 0.943 33 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 2.654 4.542 7.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.116 4.116 3 H 0.101 0.899 4 C -0.041 4.041 5 N -0.337 5.337 6 C 0.091 3.909 7 H 0.019 0.981 8 C -0.549 4.549 9 H 0.081 0.919 10 C -0.139 4.139 11 N -0.538 5.538 12 Si 0.726 3.274 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.209 1.209 16 C -0.061 4.061 17 N -0.283 5.283 18 C -0.117 4.117 19 C -0.058 4.058 20 H 0.067 0.933 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.018 0.982 25 H 0.185 0.815 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.372 3.534 4.892 8.079 hybrid contribution 1.053 -2.012 -1.026 2.492 sum -4.318 1.522 3.866 5.992 Atomic orbital electron populations 1.21743 0.95540 1.01111 1.01102 1.21156 0.94292 1.01298 0.94877 0.89936 1.20724 0.92345 0.95484 0.95523 1.58066 1.00405 1.66197 1.09024 1.19160 0.91694 0.91446 0.88622 0.98102 1.21340 0.93478 1.20348 1.19776 0.91946 1.25079 0.97459 0.94966 0.96371 1.69830 1.31953 1.24055 1.27948 0.86440 0.84353 0.77804 0.78843 1.19598 1.21108 1.20857 1.22185 0.93136 0.99931 0.90816 1.62254 1.05201 1.44531 1.16267 1.22246 0.98885 0.95558 0.95049 1.21797 0.91154 0.96814 0.96027 0.93262 0.93030 0.92816 0.93558 0.98189 0.81471 0.92695 0.92162 0.91242 0.91956 0.92908 0.95601 0.92468 0.95394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.92 37.16 0.33 -1.65 16 2 C -0.10 -1.77 2.47 -90.96 -0.22 -2.00 16 3 H 0.08 1.61 7.19 -51.93 -0.37 1.24 16 4 C 0.09 1.94 5.41 -6.55 -0.04 1.91 16 5 N -0.70 -17.06 5.91 -112.42 -0.66 -17.73 16 6 C 0.20 5.04 2.01 -69.55 -0.14 4.90 16 7 H 0.00 0.04 6.29 -51.93 -0.33 -0.28 16 8 C -0.51 -13.93 8.59 -34.44 -0.30 -14.22 16 9 H 0.06 1.68 7.47 -52.48 -0.39 1.29 16 10 C 0.06 1.72 5.14 -17.82 -0.09 1.63 16 11 N -0.90 -25.27 11.85 55.43 0.66 -24.62 16 12 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 13 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 C 0.07 1.48 4.81 -4.47 -0.02 1.46 16 17 N -0.56 -11.07 4.99 -243.97 -1.22 -12.29 16 18 C 0.03 0.56 9.36 60.07 0.56 1.12 16 19 C 0.07 1.32 4.57 -4.31 -0.02 1.30 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 21 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.91 8.04 -51.93 -0.42 0.49 16 24 H 0.00 0.01 7.60 -51.93 -0.39 -0.39 16 25 H 0.36 9.59 6.63 -39.29 -0.26 9.33 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.06 1.34 7.09 -51.93 -0.37 0.97 16 28 H 0.07 1.58 7.20 -51.93 -0.37 1.20 16 29 H 0.06 1.03 7.96 -51.93 -0.41 0.62 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.03 0.50 7.74 -51.93 -0.40 0.10 16 32 H 0.06 0.96 7.69 -51.93 -0.40 0.56 16 33 H 0.03 0.59 6.40 -51.93 -0.33 0.25 16 LS Contribution 253.01 15.07 3.81 3.81 Total: -1.00 -27.75 253.01 -7.64 -35.40 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.28 Total: 4.97 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 0.07 Total: -5.56 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -1.23 Total: -54.63 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.75 -7.64 -35.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218744742.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.025 kcal (2) G-P(sol) polarization free energy of solvation -27.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds