Wall clock time and date at job start Mon Mar 30 2020 02:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.55235 * 2 1 4 4 C 1.54509 * 109.55826 * 239.79190 * 2 1 3 5 5 N 1.40087 * 111.50527 * 164.04544 * 4 2 1 6 6 C 1.47683 * 114.57320 * 61.45107 * 5 4 2 7 7 H 1.08991 * 109.74064 * 38.32790 * 6 5 4 8 8 C 1.50697 * 109.77762 * 159.00788 * 6 5 4 9 9 H 1.08006 * 119.99977 * 118.66042 * 8 6 5 10 10 C 1.37879 * 119.99941 * 298.66406 * 8 6 5 11 11 N 1.31507 * 120.00064 * 0.02562 * 10 8 6 12 12 Si 1.86803 * 119.99910 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47273 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46640 * 120.00027 * 12 10 8 15 15 H 1.48497 * 109.47173 * 239.99720 * 12 10 8 16 16 C 1.50776 * 108.09478 * 278.67770 * 6 5 4 17 17 N 1.47755 * 111.91433 * 94.61137 * 16 6 5 18 18 C 1.46901 * 110.99881 * 84.94155 * 17 16 6 19 19 C 1.48070 * 113.78682 * 318.87919 * 17 16 6 20 20 H 1.09000 * 109.46955 * 180.21247 * 1 2 3 21 21 H 1.08999 * 109.47029 * 300.20979 * 1 2 3 22 22 H 1.08997 * 109.47025 * 60.21269 * 1 2 3 23 23 H 1.08995 * 109.07968 * 43.51848 * 4 2 1 24 24 H 1.08996 * 109.07463 * 284.56166 * 4 2 1 25 25 H 1.00900 * 110.99904 * 188.15475 * 5 4 2 26 26 H 0.97000 * 120.00152 * 180.02562 * 11 10 8 27 27 H 1.08999 * 108.99840 * 215.23650 * 16 6 5 28 28 H 1.09002 * 108.99418 * 333.99003 * 16 6 5 29 29 H 1.09004 * 109.47157 * 56.04284 * 18 17 16 30 30 H 1.08996 * 109.47479 * 176.04661 * 18 17 16 31 31 H 1.09002 * 109.47046 * 296.04856 * 18 17 16 32 32 H 1.08996 * 108.79063 * 197.39321 * 19 17 16 33 33 H 1.09002 * 108.69425 * 79.11217 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0473 -0.7325 -1.2582 5 7 3.4000 -0.4553 -1.4941 6 6 4.3119 -0.8823 -0.4138 7 1 3.9791 -1.8372 -0.0071 8 6 5.7124 -1.0193 -0.9530 9 1 6.5070 -0.4059 -0.5544 10 6 5.9794 -1.9277 -1.9554 11 7 5.0118 -2.6742 -2.4411 12 14 7.7153 -2.0970 -2.6243 13 1 8.6136 -1.1505 -1.9154 14 1 8.1943 -3.4866 -2.4118 15 1 7.7183 -1.7891 -4.0770 16 6 4.2829 0.1691 0.6665 17 7 3.3135 -0.1612 1.7315 18 6 3.9147 -1.0523 2.7327 19 6 2.0368 -0.7155 1.2262 20 1 -0.3633 -1.0277 0.0038 21 1 -0.3633 0.5171 0.8881 22 1 -0.3633 0.5105 -0.8919 23 1 1.4627 -0.4143 -2.1213 24 1 1.9225 -1.8067 -1.1216 25 1 3.6953 -0.8268 -2.3846 26 1 5.1997 -3.3135 -3.1460 27 1 5.2768 0.2542 1.1056 28 1 4.0096 1.1264 0.2225 29 1 4.8172 -0.5913 3.1342 30 1 3.2035 -1.2232 3.5409 31 1 4.1696 -2.0037 2.2658 32 1 1.2856 -0.6400 2.0123 33 1 2.1849 -1.7676 0.9826 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218744742.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:24 Heat of formation + Delta-G solvation = -19.688282 kcal Electronic energy + Delta-G solvation = -13625.499408 eV Core-core repulsion = 11491.870353 eV Total energy + Delta-G solvation = -2133.629055 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.35293 -36.08154 -35.56634 -33.49401 -30.30378 -27.88788 -27.24927 -25.36904 -24.13813 -21.31292 -20.34113 -18.85784 -17.21086 -16.63275 -16.11666 -15.90975 -15.50199 -15.40917 -14.19914 -13.92413 -13.88983 -13.50020 -13.36832 -12.94489 -12.84181 -12.65972 -12.49051 -12.03508 -11.91709 -11.88173 -11.53221 -11.20622 -11.11311 -10.79281 -9.23458 -8.72354 -8.21973 -6.38924 1.37876 1.40403 1.52477 2.37013 3.01133 3.10086 3.85024 3.91431 4.10322 4.24589 4.49611 4.59114 4.67643 4.69157 4.73923 4.82839 4.87828 4.90949 4.96999 4.99708 5.17450 5.19509 5.40051 5.47469 5.52044 5.70929 5.88993 6.21689 6.33947 6.67780 6.92404 7.23066 7.33533 8.82733 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043174 B = 0.011937 C = 0.010107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.379432 B = 2345.162183 C = 2769.596029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.089 4.089 3 H 0.075 0.925 4 C 0.088 3.912 5 N -0.700 5.700 6 C 0.205 3.795 7 H -0.039 1.039 8 C -0.534 4.534 9 H 0.061 0.939 10 C 0.018 3.982 11 N -0.925 5.925 12 Si 0.965 3.035 13 H -0.265 1.265 14 H -0.283 1.283 15 H -0.277 1.277 16 C 0.078 3.922 17 N -0.555 5.555 18 C 0.032 3.968 19 C 0.070 3.930 20 H 0.052 0.948 21 H 0.074 0.926 22 H 0.065 0.935 23 H 0.062 0.938 24 H -0.027 1.027 25 H 0.345 0.655 26 H 0.265 0.735 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.083 0.917 31 H -0.001 1.001 32 H 0.089 0.911 33 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.580 3.514 5.194 8.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.108 4.108 3 H 0.093 0.907 4 C -0.044 4.044 5 N -0.334 5.334 6 C 0.097 3.903 7 H -0.022 1.022 8 C -0.573 4.573 9 H 0.079 0.921 10 C -0.182 4.182 11 N -0.565 5.565 12 Si 0.790 3.210 13 H -0.189 1.189 14 H -0.209 1.209 15 H -0.203 1.203 16 C -0.050 4.050 17 N -0.279 5.279 18 C -0.117 4.117 19 C -0.058 4.058 20 H 0.071 0.929 21 H 0.093 0.907 22 H 0.084 0.916 23 H 0.081 0.919 24 H -0.009 1.009 25 H 0.166 0.834 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.018 0.982 32 H 0.107 0.893 33 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -5.795 4.406 5.567 9.165 hybrid contribution 1.144 -2.311 -1.216 2.850 sum -4.651 2.095 4.351 6.705 Atomic orbital electron populations 1.21694 0.92073 1.01980 1.02923 1.21119 0.97083 0.99872 0.92751 0.90677 1.20882 0.91062 0.94396 0.98026 1.58155 1.01742 1.65568 1.07917 1.19048 0.91153 0.90579 0.89514 1.02189 1.21661 0.94472 1.20821 1.20347 0.92064 1.25856 1.01360 0.94479 0.96485 1.69947 1.33874 1.24409 1.28253 0.85394 0.79607 0.77738 0.78216 1.18892 1.20875 1.20271 1.21948 0.93863 0.98567 0.90631 1.62324 1.05031 1.45130 1.15421 1.22334 1.00326 0.93951 0.95046 1.21911 0.91418 0.95053 0.97381 0.92863 0.90703 0.91572 0.91945 1.00902 0.83382 0.92578 0.92402 0.91571 0.90747 0.89815 0.98206 0.89292 0.98265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 8.92 71.98 0.64 -2.71 16 2 C -0.09 -3.14 2.47 -11.01 -0.03 -3.17 16 3 H 0.07 2.80 7.19 -2.38 -0.02 2.79 16 4 C 0.09 3.77 5.41 88.05 0.48 4.25 16 5 N -0.70 -34.80 5.91 -509.59 -3.01 -37.82 16 6 C 0.21 10.68 2.01 43.30 0.09 10.77 16 7 H -0.04 -2.34 6.29 -2.39 -0.02 -2.35 16 8 C -0.53 -29.68 8.59 25.60 0.22 -29.46 16 9 H 0.06 3.33 7.47 -2.91 -0.02 3.31 16 10 C 0.02 0.97 5.14 84.66 0.44 1.40 16 11 N -0.92 -53.14 11.85 21.45 0.25 -52.89 16 12 Si 0.97 43.39 29.54 68.60 2.03 45.41 16 13 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 15 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 16 C 0.08 3.48 4.81 85.42 0.41 3.89 16 17 N -0.56 -21.46 4.99 -925.79 -4.62 -26.08 16 18 C 0.03 1.10 9.36 127.69 1.20 2.29 16 19 C 0.07 2.56 4.57 85.34 0.39 2.95 16 20 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 22 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.06 2.43 8.04 -2.39 -0.02 2.42 16 24 H -0.03 -1.30 7.60 -2.39 -0.02 -1.32 16 25 H 0.34 18.82 6.63 -89.69 -0.59 18.22 16 26 H 0.27 14.44 8.31 -92.71 -0.77 13.66 16 27 H 0.06 2.57 7.09 -2.39 -0.02 2.56 16 28 H 0.07 2.98 7.20 -2.39 -0.02 2.96 16 29 H 0.07 2.36 7.96 -2.38 -0.02 2.34 16 30 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.00 -0.03 7.74 -2.39 -0.02 -0.05 16 32 H 0.09 2.71 7.69 -2.39 -0.02 2.69 16 33 H 0.00 -0.04 6.40 -2.39 -0.02 -0.06 16 Total: -1.00 -60.18 253.01 -1.04 -61.22 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.48 Total: 19.92 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 3.83 Total: -9.78 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -7.38 Total: -116.78 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -60.18 -1.04 -61.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218744742.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.536 kcal (2) G-P(sol) polarization free energy of solvation -60.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds