Wall clock time and date at job start Mon Mar 30 2020 02:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.64561 * 2 1 4 4 C 1.54523 * 109.55601 * 239.73792 * 2 1 3 5 5 N 1.40077 * 111.50629 * 164.15156 * 4 2 1 6 6 C 1.47688 * 114.57261 * 61.44784 * 5 4 2 7 7 C 1.50779 * 108.10019 * 278.68064 * 6 5 4 8 8 H 1.08992 * 108.99094 * 334.06940 * 7 6 5 9 9 C 1.50695 * 108.99135 * 215.23719 * 7 6 5 10 10 H 1.08003 * 120.00226 * 335.10511 * 9 7 6 11 11 C 1.37879 * 120.00074 * 155.10405 * 9 7 6 12 12 N 1.31512 * 119.99724 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 120.00187 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47127 * 60.00275 * 13 11 9 15 15 H 1.48494 * 109.47309 * 300.00100 * 13 11 9 16 16 H 1.48495 * 109.47096 * 179.97438 * 13 11 9 17 17 N 1.47749 * 111.91191 * 94.60979 * 7 6 5 18 18 C 1.46903 * 110.99956 * 84.94370 * 17 7 6 19 19 C 1.48073 * 113.79009 * 318.87938 * 17 7 6 20 20 H 1.08997 * 109.46887 * 180.26608 * 1 2 3 21 21 H 1.09001 * 109.46529 * 300.26884 * 1 2 3 22 22 H 1.08996 * 109.47469 * 60.25956 * 1 2 3 23 23 H 1.09004 * 109.06940 * 43.62728 * 4 2 1 24 24 H 1.09002 * 109.07083 * 284.67046 * 4 2 1 25 25 H 1.00893 * 111.00249 * 188.14942 * 5 4 2 26 26 H 1.09004 * 109.73642 * 159.02570 * 6 5 4 27 27 H 1.09008 * 109.77208 * 38.35461 * 6 5 4 28 28 H 0.97004 * 120.00008 * 359.97438 * 12 11 9 29 29 H 1.08998 * 109.47440 * 66.25331 * 18 17 7 30 30 H 1.08996 * 109.46907 * 186.25726 * 18 17 7 31 31 H 1.08999 * 109.46846 * 306.25390 * 18 17 7 32 32 H 1.08995 * 108.78756 * 197.40004 * 19 17 7 33 33 H 1.09004 * 108.78776 * 79.17773 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8965 1.0266 0.0000 4 6 2.0472 -0.7338 -1.2577 5 7 3.4005 -0.4588 -1.4925 6 6 4.3109 -0.8868 -0.4112 7 6 4.2826 0.1650 0.6687 8 1 4.0097 1.1222 0.2246 9 6 5.6565 0.2807 1.2768 10 1 6.3377 -0.5565 1.2353 11 6 6.0441 1.4552 1.8861 12 7 5.2149 2.4747 1.9362 13 14 7.7470 1.5984 2.6405 14 1 8.7737 1.3838 1.5893 15 1 7.9053 0.5736 3.7035 16 1 7.9160 2.9517 3.2278 17 7 3.3118 -0.1635 1.7330 18 6 3.9108 -1.0553 2.7350 19 6 2.0347 -0.7160 1.2268 20 1 -0.3633 -1.0276 0.0048 21 1 -0.3632 0.5180 0.8876 22 1 -0.3634 0.5098 -0.8922 23 1 1.4637 -0.4148 -2.1213 24 1 1.9206 -1.8077 -1.1207 25 1 3.6960 -0.8310 -2.3825 26 1 5.3239 -0.9871 -0.8010 27 1 3.9770 -1.8413 -0.0043 28 1 4.3308 2.4005 1.5441 29 1 4.7027 -0.5263 3.2651 30 1 3.1458 -1.3700 3.4448 31 1 4.3282 -1.9312 2.2384 32 1 1.2830 -0.6390 2.0123 33 1 2.1793 -1.7688 0.9842 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218744856.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:06 Heat of formation + Delta-G solvation = 5.258496 kcal Electronic energy + Delta-G solvation = -13739.925500 eV Core-core repulsion = 11607.378219 eV Total energy + Delta-G solvation = -2132.547281 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.85923 -34.78142 -33.51603 -31.87216 -28.23209 -26.36308 -25.08569 -23.33726 -22.72228 -19.90762 -18.87965 -16.64818 -15.46998 -15.37613 -14.61752 -13.99800 -13.73415 -13.65411 -12.75022 -12.47914 -12.12214 -12.07470 -11.78905 -11.31506 -10.83302 -10.71460 -10.62520 -10.37570 -10.21090 -10.07450 -9.99292 -9.55420 -8.48586 -8.28958 -7.84015 -6.83536 -6.26408 -3.98585 3.47421 3.48279 3.67499 4.56842 4.78401 5.03276 5.18820 5.35662 5.51723 5.75866 5.85129 5.93017 5.99198 6.07985 6.16074 6.28202 6.34892 6.39866 6.50566 6.55086 6.67083 6.82842 6.93526 7.17864 7.43304 7.86455 7.95722 8.03322 8.45559 8.62509 8.71325 9.00487 9.78450 11.15198 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.048777 B = 0.011602 C = 0.011026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.901878 B = 2412.757344 C = 2538.871570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.090 0.910 4 C 0.088 3.912 5 N -0.704 5.704 6 C 0.056 3.944 7 C 0.197 3.803 8 H 0.060 0.940 9 C -0.602 4.602 10 H 0.044 0.956 11 C 0.034 3.966 12 N -0.894 5.894 13 Si 1.063 2.937 14 H -0.289 1.289 15 H -0.289 1.289 16 H -0.283 1.283 17 N -0.546 5.546 18 C 0.061 3.939 19 C 0.062 3.938 20 H 0.047 0.953 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.002 0.998 25 H 0.332 0.668 26 H 0.071 0.929 27 H 0.014 0.986 28 H 0.281 0.719 29 H 0.077 0.923 30 H 0.027 0.973 31 H 0.003 0.997 32 H 0.052 0.948 33 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.519 -6.139 -3.598 9.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.108 0.892 4 C -0.043 4.043 5 N -0.334 5.334 6 C -0.073 4.073 7 C 0.093 3.907 8 H 0.078 0.922 9 C -0.642 4.642 10 H 0.062 0.938 11 C -0.174 4.174 12 N -0.528 5.528 13 Si 0.891 3.109 14 H -0.216 1.216 15 H -0.216 1.216 16 H -0.208 1.208 17 N -0.272 5.272 18 C -0.087 4.087 19 C -0.065 4.065 20 H 0.066 0.934 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.020 0.980 25 H 0.150 0.850 26 H 0.089 0.911 27 H 0.032 0.968 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.046 0.954 31 H 0.021 0.979 32 H 0.071 0.929 33 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -4.704 -4.076 -2.307 6.638 hybrid contribution -0.871 -2.949 -1.372 3.367 sum -5.575 -7.025 -3.679 9.694 Atomic orbital electron populations 1.21750 0.95271 1.00950 1.01529 1.21096 0.94458 1.01919 0.93950 0.89154 1.20859 0.89836 0.95750 0.97854 1.57493 1.02622 1.67516 1.05804 1.22458 0.94582 0.97240 0.93019 1.19295 0.90855 0.94165 0.86425 0.92212 1.21811 0.98136 1.01643 1.42574 0.93805 1.25680 1.04311 0.92371 0.95083 1.70659 1.09277 1.32004 1.40855 0.83651 0.74858 0.76061 0.76281 1.21613 1.21579 1.20833 1.62696 1.04010 1.43708 1.16739 1.21864 0.98105 0.94160 0.94553 1.21851 0.93981 0.95113 0.95603 0.93417 0.92464 0.92902 0.92138 0.98038 0.84965 0.91080 0.96766 0.90740 0.90398 0.95398 0.97870 0.92933 0.97358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.91 37.16 0.33 -1.61 16 2 C -0.10 -1.72 2.47 -90.95 -0.22 -1.95 16 3 H 0.09 1.92 7.19 -51.93 -0.37 1.55 16 4 C 0.09 1.51 5.41 -6.55 -0.04 1.47 16 5 N -0.70 -13.33 6.11 -118.26 -0.72 -14.06 16 6 C 0.06 1.23 5.64 -4.50 -0.03 1.20 16 7 C 0.20 4.98 1.43 -69.51 -0.10 4.88 16 8 H 0.06 1.70 5.86 -51.93 -0.30 1.40 16 9 C -0.60 -16.53 5.92 -34.44 -0.20 -16.74 16 10 H 0.04 1.20 7.78 -52.48 -0.41 0.80 16 11 C 0.03 0.97 5.35 -17.82 -0.10 0.87 16 12 N -0.89 -26.99 13.63 55.43 0.76 -26.23 16 13 Si 1.06 25.02 29.90 -169.99 -5.08 19.93 16 14 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 17 N -0.55 -12.98 4.94 -237.34 -1.17 -14.15 16 18 C 0.06 1.40 8.59 60.07 0.52 1.91 16 19 C 0.06 1.25 4.49 -4.31 -0.02 1.23 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.91 8.04 -51.93 -0.42 0.49 16 24 H 0.00 0.03 7.60 -51.93 -0.39 -0.36 16 25 H 0.33 5.37 8.85 -39.30 -0.35 5.03 16 26 H 0.07 1.57 7.71 -51.93 -0.40 1.17 16 27 H 0.01 0.31 6.28 -51.92 -0.33 -0.01 16 28 H 0.28 8.63 6.71 -40.82 -0.27 8.35 16 29 H 0.08 1.94 6.91 -51.93 -0.36 1.58 16 30 H 0.03 0.56 8.03 -51.93 -0.42 0.14 16 31 H 0.00 0.06 7.61 -51.93 -0.40 -0.33 16 32 H 0.05 1.00 7.69 -51.93 -0.40 0.60 16 33 H 0.01 0.17 6.41 -51.93 -0.33 -0.17 16 LS Contribution 251.16 15.07 3.78 3.78 Total: -1.00 -29.49 251.16 -7.50 -36.99 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.21 Total: 2.45 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 0.14 Total: -8.73 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -1.14 Total: -54.44 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.93 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.49 -7.50 -36.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218744856.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.251 kcal (2) G-P(sol) polarization free energy of solvation -29.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds