Wall clock time and date at job start Mon Mar 30 2020 02:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 108.86590 * 2 1 4 4 C 1.53704 * 108.95225 * 241.29582 * 2 1 3 5 5 N 1.48066 * 112.46798 * 197.87591 * 4 2 1 6 6 C 1.44569 * 113.85948 * 318.32540 * 5 4 2 7 7 C 1.54202 * 108.85283 * 94.23107 * 6 5 4 8 8 H 1.08999 * 108.95613 * 41.84146 * 7 6 5 9 9 C 1.50698 * 108.96138 * 160.50626 * 7 6 5 10 10 H 1.08000 * 119.99555 * 119.99993 * 9 7 6 11 11 C 1.37868 * 120.00093 * 299.99525 * 9 7 6 12 12 N 1.31517 * 120.00289 * 0.02562 * 11 9 7 13 13 Si 1.86801 * 119.99991 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47100 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46775 * 120.00326 * 13 11 9 16 16 H 1.48499 * 109.47429 * 240.00318 * 13 11 9 17 17 N 1.40021 * 112.07903 * 281.18207 * 7 6 5 18 18 C 1.46903 * 110.99829 * 188.09536 * 17 7 6 19 19 C 1.47903 * 114.06635 * 61.80360 * 17 7 6 20 20 H 1.09002 * 109.46898 * 178.70303 * 1 2 3 21 21 H 1.09003 * 109.46972 * 298.69828 * 1 2 3 22 22 H 1.08991 * 109.47335 * 58.70164 * 1 2 3 23 23 H 1.09003 * 108.87961 * 77.11071 * 4 2 1 24 24 H 1.08998 * 108.88592 * 318.65252 * 4 2 1 25 25 H 1.00901 * 110.99830 * 192.20168 * 5 4 2 26 26 H 1.09004 * 109.57063 * 214.03680 * 6 5 4 27 27 H 1.09003 * 109.57489 * 334.41512 * 6 5 4 28 28 H 0.96996 * 120.00271 * 179.97438 * 12 11 9 29 29 H 1.09000 * 109.46943 * 59.99251 * 18 17 7 30 30 H 1.08996 * 109.46748 * 179.97438 * 18 17 7 31 31 H 1.08994 * 109.46971 * 299.99646 * 18 17 7 32 32 H 1.08998 * 109.63127 * 39.78297 * 19 17 7 33 33 H 1.09000 * 109.62791 * 160.17533 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8825 1.0314 0.0000 4 6 2.0292 -0.6982 -1.2751 5 7 3.4446 -1.1205 -1.1718 6 6 4.3022 -0.1424 -0.5410 7 6 4.4089 -0.4690 0.9623 8 1 4.5166 -1.5468 1.0836 9 6 5.6310 0.2095 1.5252 10 1 5.5291 0.9306 2.3228 11 6 6.8792 -0.0902 1.0222 12 7 7.0033 -0.9680 0.0507 13 14 8.3941 0.7514 1.7195 14 1 7.9875 1.6896 2.7963 15 1 9.3160 -0.2710 2.2763 16 1 9.0830 1.5041 0.6406 17 7 3.2821 -0.0414 1.6751 18 6 3.4876 -0.1883 3.1222 19 6 2.0199 -0.6852 1.2508 20 1 -0.3633 -1.0274 -0.0233 21 1 -0.3633 0.4935 0.9015 22 1 -0.3633 0.5338 -0.8780 23 1 1.9262 -0.0125 -2.1161 24 1 1.4115 -1.5768 -1.4611 25 1 3.8076 -1.3919 -2.0733 26 1 5.2930 -0.1793 -0.9939 27 1 3.8768 0.8530 -0.6692 28 1 7.8813 -1.1786 -0.3035 29 1 4.3444 0.4110 3.4302 30 1 2.5976 0.1513 3.6518 31 1 3.6736 -1.2361 3.3582 32 1 2.1985 -1.7404 1.0444 33 1 1.2754 -0.5875 2.0409 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218744946.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:10 Heat of formation + Delta-G solvation = 13.914352 kcal Electronic energy + Delta-G solvation = -13638.642632 eV Core-core repulsion = 11506.470697 eV Total energy + Delta-G solvation = -2132.171935 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.50479 -34.72916 -33.44536 -31.88202 -27.80719 -26.62427 -25.26112 -23.62954 -22.43804 -19.32486 -18.84784 -16.44052 -15.52640 -14.80543 -14.37037 -14.30811 -13.62846 -13.51526 -12.58265 -12.45253 -12.24684 -11.93243 -11.39268 -11.18282 -10.99358 -10.74060 -10.46530 -10.43603 -10.30824 -9.93887 -9.75992 -9.64756 -8.84625 -8.38428 -7.29105 -6.87804 -5.95611 -4.01429 3.31026 3.39160 3.43373 4.43908 5.06148 5.09512 5.32891 5.38532 5.63082 5.74047 5.93808 6.04337 6.21647 6.22837 6.28793 6.29610 6.54587 6.58374 6.64167 6.76920 6.87813 6.95966 7.13223 7.40950 7.78491 7.89333 8.21285 8.24727 8.40192 8.62024 8.89608 9.15726 9.64855 11.09327 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049765 B = 0.011715 C = 0.010086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.511092 B = 2389.430069 C = 2775.507399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.076 0.924 4 C 0.073 3.927 5 N -0.703 5.703 6 C 0.077 3.923 7 C 0.230 3.770 8 H -0.002 1.002 9 C -0.508 4.508 10 H 0.065 0.935 11 C 0.058 3.942 12 N -0.887 5.887 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.285 1.285 17 N -0.549 5.549 18 C 0.045 3.955 19 C 0.074 3.926 20 H 0.050 0.950 21 H 0.053 0.947 22 H 0.048 0.952 23 H 0.013 0.987 24 H 0.055 0.945 25 H 0.330 0.670 26 H 0.098 0.902 27 H 0.013 0.987 28 H 0.258 0.742 29 H 0.077 0.923 30 H 0.037 0.963 31 H 0.010 0.990 32 H 0.038 0.962 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.590 1.023 -0.581 8.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.094 0.906 4 C -0.056 4.056 5 N -0.333 5.333 6 C -0.052 4.052 7 C 0.120 3.880 8 H 0.015 0.985 9 C -0.547 4.547 10 H 0.083 0.917 11 C -0.143 4.143 12 N -0.526 5.526 13 Si 0.720 3.280 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.211 1.211 17 N -0.273 5.273 18 C -0.103 4.103 19 C -0.054 4.054 20 H 0.069 0.931 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.032 0.968 24 H 0.074 0.926 25 H 0.147 0.853 26 H 0.116 0.884 27 H 0.031 0.969 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.028 0.972 32 H 0.056 0.944 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.581 1.097 -0.221 8.654 hybrid contribution 1.070 0.180 -0.342 1.138 sum -7.511 1.276 -0.563 7.639 Atomic orbital electron populations 1.21835 0.95744 1.01166 1.01108 1.20975 0.94091 1.00992 0.94898 0.90561 1.22186 0.90819 0.97136 0.95444 1.59199 1.01080 1.46148 1.26914 1.21953 0.96176 0.89886 0.97215 1.18079 0.85977 0.94271 0.89626 0.98475 1.21451 0.90484 1.23843 1.18914 0.91738 1.24980 0.98920 0.95246 0.95202 1.69945 1.23202 1.33112 1.26368 0.86536 0.83089 0.79364 0.78988 1.19790 1.21172 1.21139 1.59314 1.03604 1.60363 1.04025 1.22182 1.00406 0.98952 0.88727 1.21686 0.92060 0.96586 0.95022 0.93071 0.92767 0.93289 0.96846 0.92649 0.85304 0.88363 0.96856 0.93168 0.90473 0.94413 0.97170 0.94408 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.86 37.16 0.33 -1.57 16 2 C -0.09 -1.59 2.25 -91.36 -0.21 -1.79 16 3 H 0.08 1.49 7.23 -51.93 -0.38 1.11 16 4 C 0.07 1.31 5.87 -2.82 -0.02 1.29 16 5 N -0.70 -14.93 6.12 -113.49 -0.69 -15.63 16 6 C 0.08 1.89 5.36 -4.44 -0.02 1.87 16 7 C 0.23 5.98 1.56 -71.79 -0.11 5.87 16 8 H 0.00 -0.07 8.07 -51.93 -0.42 -0.49 16 9 C -0.51 -14.04 7.71 -34.44 -0.27 -14.31 16 10 H 0.06 1.78 6.03 -52.49 -0.32 1.46 16 11 C 0.06 1.60 5.18 -17.82 -0.09 1.50 16 12 N -0.89 -25.31 11.36 55.43 0.63 -24.68 16 13 Si 0.89 21.34 29.54 -169.99 -5.02 16.31 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 N -0.55 -12.54 4.15 -241.16 -1.00 -13.54 16 18 C 0.05 0.95 9.06 60.07 0.54 1.49 16 19 C 0.07 1.46 4.85 -4.38 -0.02 1.43 16 20 H 0.05 0.65 8.11 -51.93 -0.42 0.22 16 21 H 0.05 0.69 8.03 -51.93 -0.42 0.27 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.06 0.90 7.95 -51.93 -0.41 0.49 16 25 H 0.33 6.50 8.89 -39.29 -0.35 6.15 16 26 H 0.10 2.66 5.80 -51.93 -0.30 2.36 16 27 H 0.01 0.33 6.93 -51.93 -0.36 -0.03 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.08 1.69 5.82 -51.93 -0.30 1.39 16 30 H 0.04 0.67 7.87 -51.93 -0.41 0.26 16 31 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.04 0.81 7.57 -51.93 -0.39 0.41 16 33 H 0.05 0.93 7.22 -51.93 -0.37 0.55 16 LS Contribution 251.43 15.07 3.79 3.79 Total: -1.00 -28.78 251.43 -7.42 -36.19 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.25 Total: 1.77 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 0.14 Total: -4.22 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -1.07 Total: -53.85 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.78 -7.42 -36.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218744946.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.107 kcal (2) G-P(sol) polarization free energy of solvation -28.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds