Wall clock time and date at job start Mon Mar 30 2020 02:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 108.86590 * 2 1 4 4 C 1.53704 * 108.95225 * 241.29582 * 2 1 3 5 5 N 1.48066 * 112.46798 * 197.87591 * 4 2 1 6 6 C 1.44569 * 113.85948 * 318.32540 * 5 4 2 7 7 C 1.54202 * 108.85283 * 94.23107 * 6 5 4 8 8 H 1.08999 * 108.95613 * 41.84146 * 7 6 5 9 9 C 1.50698 * 108.96138 * 160.50626 * 7 6 5 10 10 H 1.08000 * 119.99555 * 119.99993 * 9 7 6 11 11 C 1.37868 * 120.00093 * 299.99525 * 9 7 6 12 12 N 1.31517 * 120.00289 * 0.02562 * 11 9 7 13 13 Si 1.86801 * 119.99991 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47100 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46775 * 120.00326 * 13 11 9 16 16 H 1.48499 * 109.47429 * 240.00318 * 13 11 9 17 17 N 1.40021 * 112.07903 * 281.18207 * 7 6 5 18 18 C 1.46903 * 110.99829 * 188.09536 * 17 7 6 19 19 C 1.47903 * 114.06635 * 61.80360 * 17 7 6 20 20 H 1.09002 * 109.46898 * 178.70303 * 1 2 3 21 21 H 1.09003 * 109.46972 * 298.69828 * 1 2 3 22 22 H 1.08991 * 109.47335 * 58.70164 * 1 2 3 23 23 H 1.09003 * 108.87961 * 77.11071 * 4 2 1 24 24 H 1.08998 * 108.88592 * 318.65252 * 4 2 1 25 25 H 1.00901 * 110.99830 * 192.20168 * 5 4 2 26 26 H 1.09004 * 109.57063 * 214.03680 * 6 5 4 27 27 H 1.09003 * 109.57489 * 334.41512 * 6 5 4 28 28 H 0.96996 * 120.00271 * 179.97438 * 12 11 9 29 29 H 1.09000 * 109.46943 * 59.99251 * 18 17 7 30 30 H 1.08996 * 109.46748 * 179.97438 * 18 17 7 31 31 H 1.08994 * 109.46971 * 299.99646 * 18 17 7 32 32 H 1.08998 * 109.63127 * 39.78297 * 19 17 7 33 33 H 1.09000 * 109.62791 * 160.17533 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8825 1.0314 0.0000 4 6 2.0292 -0.6982 -1.2751 5 7 3.4446 -1.1205 -1.1718 6 6 4.3022 -0.1424 -0.5410 7 6 4.4089 -0.4690 0.9623 8 1 4.5166 -1.5468 1.0836 9 6 5.6310 0.2095 1.5252 10 1 5.5291 0.9306 2.3228 11 6 6.8792 -0.0902 1.0222 12 7 7.0033 -0.9680 0.0507 13 14 8.3941 0.7514 1.7195 14 1 7.9875 1.6896 2.7963 15 1 9.3160 -0.2710 2.2763 16 1 9.0830 1.5041 0.6406 17 7 3.2821 -0.0414 1.6751 18 6 3.4876 -0.1883 3.1222 19 6 2.0199 -0.6852 1.2508 20 1 -0.3633 -1.0274 -0.0233 21 1 -0.3633 0.4935 0.9015 22 1 -0.3633 0.5338 -0.8780 23 1 1.9262 -0.0125 -2.1161 24 1 1.4115 -1.5768 -1.4611 25 1 3.8076 -1.3919 -2.0733 26 1 5.2930 -0.1793 -0.9939 27 1 3.8768 0.8530 -0.6692 28 1 7.8813 -1.1786 -0.3035 29 1 4.3444 0.4110 3.4302 30 1 2.5976 0.1513 3.6518 31 1 3.6736 -1.2361 3.3582 32 1 2.1985 -1.7404 1.0444 33 1 1.2754 -0.5875 2.0409 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218744946.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:10 Heat of formation + Delta-G solvation = -7.241919 kcal Electronic energy + Delta-G solvation = -13639.560036 eV Core-core repulsion = 11506.470697 eV Total energy + Delta-G solvation = -2133.089340 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.22288 -36.39667 -35.25718 -33.73357 -29.64681 -28.29492 -26.82085 -25.48169 -24.10646 -21.20493 -20.39764 -18.48892 -17.36996 -16.46802 -16.11360 -16.04760 -15.34100 -15.26790 -14.28089 -14.09959 -13.68430 -13.39311 -13.12977 -12.93798 -12.71858 -12.49371 -12.24078 -12.03436 -11.95248 -11.76403 -11.46267 -11.32445 -10.81855 -10.48610 -9.00387 -8.76524 -8.07206 -6.20906 1.41010 1.42818 1.54544 2.43179 3.15244 3.48315 3.57356 3.97589 4.17563 4.38011 4.60196 4.62632 4.74859 4.80372 4.82094 4.84198 4.94865 5.00261 5.08626 5.19109 5.22767 5.36224 5.43933 5.52746 5.73698 5.78213 6.22800 6.49893 6.54995 6.77504 6.97010 7.09654 7.51241 8.96971 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049765 B = 0.011715 C = 0.010086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.511092 B = 2389.430069 C = 2775.507399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 H 0.055 0.945 4 C 0.071 3.929 5 N -0.715 5.715 6 C 0.095 3.905 7 C 0.242 3.758 8 H -0.054 1.054 9 C -0.528 4.528 10 H 0.062 0.938 11 C 0.011 3.989 12 N -0.913 5.913 13 Si 0.958 3.042 14 H -0.267 1.267 15 H -0.283 1.283 16 H -0.280 1.280 17 N -0.560 5.560 18 C 0.047 3.953 19 C 0.076 3.924 20 H 0.063 0.937 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.028 0.972 24 H 0.076 0.924 25 H 0.337 0.663 26 H 0.069 0.931 27 H 0.007 0.993 28 H 0.260 0.740 29 H 0.061 0.939 30 H 0.074 0.926 31 H -0.001 1.001 32 H 0.017 0.983 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.941 1.712 -0.384 10.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.109 4.109 3 H 0.074 0.926 4 C -0.057 4.057 5 N -0.346 5.346 6 C -0.036 4.036 7 C 0.132 3.868 8 H -0.037 1.037 9 C -0.567 4.567 10 H 0.080 0.920 11 C -0.188 4.188 12 N -0.553 5.553 13 Si 0.784 3.216 14 H -0.191 1.191 15 H -0.209 1.209 16 H -0.206 1.206 17 N -0.283 5.283 18 C -0.100 4.100 19 C -0.052 4.052 20 H 0.082 0.918 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.047 0.953 24 H 0.095 0.905 25 H 0.155 0.845 26 H 0.087 0.913 27 H 0.026 0.974 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.018 0.982 32 H 0.035 0.965 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.959 1.787 -0.025 10.118 hybrid contribution 1.443 -0.072 -0.401 1.499 sum -8.516 1.715 -0.426 8.698 Atomic orbital electron populations 1.21751 0.92047 1.02458 1.02563 1.20982 0.97118 0.99192 0.93628 0.92614 1.22336 0.88603 0.98503 0.96304 1.59113 1.02647 1.45432 1.27449 1.21537 0.95363 0.90241 0.96431 1.17831 0.87073 0.90885 0.90968 1.03651 1.21738 0.91703 1.24049 1.19162 0.92002 1.25751 1.01780 0.95815 0.95464 1.70079 1.23856 1.34079 1.27239 0.85508 0.79318 0.78369 0.78431 1.19123 1.20876 1.20570 1.59343 1.03780 1.60523 1.04694 1.22183 1.01586 0.98099 0.88170 1.21811 0.91034 0.95323 0.97000 0.91830 0.91645 0.91611 0.95324 0.90538 0.84510 0.91310 0.97431 0.93102 0.92024 0.90698 0.98249 0.96451 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.86 71.98 0.64 -2.39 16 2 C -0.09 -2.98 2.25 -11.27 -0.03 -3.00 16 3 H 0.06 2.09 7.23 -2.39 -0.02 2.07 16 4 C 0.07 2.39 5.87 86.32 0.51 2.90 16 5 N -0.72 -30.45 6.12 -512.97 -3.14 -33.59 16 6 C 0.09 4.74 5.36 87.15 0.47 5.21 16 7 C 0.24 12.96 1.56 45.82 0.07 13.03 16 8 H -0.05 -3.36 8.07 -2.39 -0.02 -3.38 16 9 C -0.53 -29.80 7.71 25.60 0.20 -29.60 16 10 H 0.06 3.45 6.03 -2.91 -0.02 3.44 16 11 C 0.01 0.60 5.18 84.65 0.44 1.04 16 12 N -0.91 -53.34 11.36 21.44 0.24 -53.10 16 13 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 N -0.56 -25.51 4.15 -916.91 -3.81 -29.32 16 18 C 0.05 1.96 9.06 127.69 1.16 3.12 16 19 C 0.08 2.86 4.85 85.40 0.41 3.27 16 20 H 0.06 1.34 8.11 -2.39 -0.02 1.32 16 21 H 0.06 1.40 8.03 -2.39 -0.02 1.38 16 22 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.08 2.28 7.95 -2.39 -0.02 2.27 16 25 H 0.34 13.33 8.89 -89.69 -0.80 12.53 16 26 H 0.07 3.85 5.80 -2.38 -0.01 3.83 16 27 H 0.01 0.37 6.93 -2.39 -0.02 0.36 16 28 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.06 2.71 5.82 -2.39 -0.01 2.70 16 30 H 0.07 2.51 7.87 -2.39 -0.02 2.49 16 31 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.02 0.73 7.57 -2.39 -0.02 0.71 16 33 H 0.08 2.58 7.22 -2.39 -0.02 2.57 16 Total: -1.00 -62.94 251.43 -0.53 -63.47 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.28 Total: 12.74 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 3.86 Total: -6.42 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -6.70 Total: -116.01 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -62.94 -0.53 -63.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218744946.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.228 kcal (2) G-P(sol) polarization free energy of solvation -62.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds