Wall clock time and date at job start Mon Mar 30 2020 02:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.06128 * 2 1 4 4 C 1.54508 * 109.01535 * 241.00707 * 2 1 3 5 5 C 1.50741 * 108.94061 * 163.49496 * 4 2 1 6 6 N 1.48066 * 112.93860 * 92.65047 * 5 4 2 7 7 C 1.46896 * 111.00359 * 192.22287 * 6 5 4 8 8 C 1.47745 * 113.78765 * 318.29469 * 6 5 4 9 9 C 1.50784 * 111.91388 * 318.86388 * 8 6 5 10 10 H 1.08996 * 109.77543 * 334.94001 * 9 8 6 11 11 C 1.50698 * 109.73798 * 214.25918 * 9 8 6 12 12 H 1.08005 * 119.99819 * 1.35943 * 11 9 8 13 13 C 1.37875 * 120.00046 * 181.35285 * 11 9 8 14 14 N 1.31511 * 120.00192 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47261 * 60.00310 * 15 13 11 18 18 H 1.48500 * 109.47454 * 300.00304 * 15 13 11 19 19 N 1.40084 * 109.07019 * 119.02867 * 2 1 3 20 20 H 1.09001 * 109.46733 * 300.97119 * 1 2 3 21 21 H 1.08998 * 109.46898 * 60.96778 * 1 2 3 22 22 H 1.08995 * 109.47082 * 180.97050 * 1 2 3 23 23 H 1.09001 * 109.56117 * 283.33156 * 4 2 1 24 24 H 1.08995 * 109.56087 * 43.54776 * 4 2 1 25 25 H 1.08997 * 108.79592 * 213.54276 * 5 4 2 26 26 H 1.09003 * 108.78842 * 331.87671 * 5 4 2 27 27 H 1.08998 * 109.47002 * 63.95349 * 7 6 5 28 28 H 1.09005 * 109.46979 * 183.95731 * 7 6 5 29 29 H 1.08998 * 109.47027 * 303.95415 * 7 6 5 30 30 H 1.09003 * 108.99387 * 198.24213 * 8 6 5 31 31 H 1.08999 * 108.99889 * 79.49695 * 8 6 5 32 32 H 0.97001 * 119.99934 * 359.97438 * 14 13 11 33 33 H 1.00897 * 111.00172 * 308.60137 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8860 1.0302 0.0000 4 6 2.0335 -0.7080 -1.2777 5 6 3.4853 -0.3621 -1.4891 6 7 4.4079 -1.3463 -0.8788 7 6 5.7838 -0.8325 -0.8527 8 6 3.9884 -1.8049 0.4616 9 6 3.4572 -0.6722 1.3032 10 1 3.8802 0.2719 0.9602 11 6 3.8209 -0.8977 2.7481 12 1 4.4012 -1.7639 3.0300 13 6 3.4130 0.0018 3.7102 14 7 2.7062 1.0563 3.3669 15 14 3.8645 -0.2774 5.5011 16 1 3.3101 0.8239 6.3289 17 1 5.3427 -0.3059 5.6404 18 1 3.2993 -1.5723 5.9581 19 7 1.9877 -0.6424 1.1576 20 1 -0.3633 0.5289 0.8812 21 1 -0.3633 0.4987 -0.8985 22 1 -0.3633 -1.0275 0.0174 23 1 1.9285 -1.7868 -1.1626 24 1 1.4486 -0.3739 -2.1346 25 1 3.6824 -0.3133 -2.5600 26 1 3.6801 0.6173 -1.0518 27 1 5.8310 0.0473 -0.2110 28 1 6.4516 -1.6017 -0.4644 29 1 6.0899 -0.5621 -1.8632 30 1 4.8442 -2.2517 0.9677 31 1 3.2100 -2.5599 0.3508 32 1 2.4720 1.2015 2.4369 33 1 1.5505 -0.2578 1.9816 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218745062.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:39 Heat of formation + Delta-G solvation = -16.471174 kcal Electronic energy + Delta-G solvation = -13738.169215 eV Core-core repulsion = 11604.679664 eV Total energy + Delta-G solvation = -2133.489550 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.60245 -36.70091 -35.59819 -32.59922 -30.49327 -28.87487 -27.00460 -25.38120 -23.90754 -21.37623 -20.75562 -19.41365 -17.30170 -16.58168 -16.24825 -15.70279 -15.63784 -15.32846 -14.55913 -14.26533 -13.78808 -13.37214 -13.28312 -13.00205 -12.76112 -12.63251 -12.58510 -12.08903 -11.99596 -11.95722 -11.77232 -11.35127 -10.76014 -10.73475 -9.36201 -9.01200 -8.58492 -6.47651 1.51964 1.58772 1.78683 2.51758 2.99987 3.00460 3.65031 3.84423 4.00403 4.12900 4.35093 4.37864 4.50541 4.55431 4.60537 4.68857 4.76690 4.80867 4.88478 4.90670 5.05155 5.11677 5.19583 5.35784 5.40535 5.67821 6.03402 6.14017 6.17721 6.44034 6.65006 6.98810 7.33756 8.63720 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034341 B = 0.013896 C = 0.010735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.164747 B = 2014.419460 C = 2607.710607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.092 3.908 3 H -0.022 1.022 4 C -0.104 4.104 5 C 0.060 3.940 6 N -0.554 5.554 7 C 0.032 3.968 8 C 0.086 3.914 9 C 0.191 3.809 10 H -0.046 1.046 11 C -0.608 4.608 12 H 0.054 0.946 13 C -0.024 4.024 14 N -0.934 5.934 15 Si 1.119 2.881 16 H -0.285 1.285 17 H -0.272 1.272 18 H -0.268 1.268 19 N -0.702 5.702 20 H 0.037 0.963 21 H 0.081 0.919 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.000 1.000 27 H -0.003 1.003 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.255 0.745 33 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.155 -2.840 -7.609 8.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.020 4.020 3 H -0.004 1.004 4 C -0.142 4.142 5 C -0.067 4.067 6 N -0.278 5.278 7 C -0.117 4.117 8 C -0.042 4.042 9 C 0.083 3.917 10 H -0.028 1.028 11 C -0.647 4.647 12 H 0.072 0.928 13 C -0.222 4.222 14 N -0.573 5.573 15 Si 0.940 3.060 16 H -0.210 1.210 17 H -0.198 1.198 18 H -0.193 1.193 19 N -0.337 5.337 20 H 0.056 0.944 21 H 0.100 0.900 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.119 0.881 25 H 0.111 0.889 26 H 0.018 0.982 27 H 0.016 0.984 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.323 -3.187 -6.735 7.458 hybrid contribution 0.368 1.350 -0.581 1.515 sum 0.045 -1.837 -7.316 7.543 Atomic orbital electron populations 1.21840 0.93281 1.02452 1.01700 1.20563 0.96272 0.92818 0.92372 1.00405 1.21581 0.94441 1.01559 0.96666 1.21892 0.93187 0.92053 0.99551 1.62320 1.02841 1.40059 1.22612 1.22337 0.89672 0.98140 1.01501 1.21817 0.99085 0.96924 0.86419 1.19215 0.84707 0.92413 0.95386 1.02845 1.22448 1.37321 1.11479 0.93402 0.92789 1.27343 0.92895 0.92087 1.09889 1.71002 1.37497 1.28902 1.19902 0.82902 0.76796 0.76499 0.69805 1.21039 1.19757 1.19335 1.58185 1.09593 1.61193 1.04775 0.94416 0.90036 0.91530 0.90866 0.88138 0.88860 0.98161 0.98390 0.90811 0.89545 0.92582 0.91440 0.93392 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 9.23 71.98 0.66 -3.83 16 2 C 0.09 3.73 2.64 46.66 0.12 3.85 16 3 H -0.02 -1.00 7.59 -2.39 -0.02 -1.01 16 4 C -0.10 -3.54 5.02 30.37 0.15 -3.39 16 5 C 0.06 2.15 5.01 85.35 0.43 2.58 16 6 N -0.55 -21.14 4.99 -925.82 -4.62 -25.76 16 7 C 0.03 1.09 9.36 127.69 1.20 2.29 16 8 C 0.09 3.82 4.81 85.42 0.41 4.24 16 9 C 0.19 9.88 1.63 43.30 0.07 9.95 16 10 H -0.05 -2.68 6.19 -2.39 -0.01 -2.69 16 11 C -0.61 -34.28 8.61 25.60 0.22 -34.06 16 12 H 0.05 3.00 7.46 -2.91 -0.02 2.97 16 13 C -0.02 -1.34 5.14 84.65 0.44 -0.91 16 14 N -0.93 -56.16 12.90 21.45 0.28 -55.88 16 15 Si 1.12 49.69 29.90 68.60 2.05 51.74 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 18 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 19 N -0.70 -33.99 5.20 -486.43 -2.53 -36.52 16 20 H 0.04 1.33 8.12 -2.39 -0.02 1.31 16 21 H 0.08 2.17 8.11 -2.39 -0.02 2.15 16 22 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.07 2.60 7.19 -2.39 -0.02 2.59 16 24 H 0.10 2.66 8.02 -2.39 -0.02 2.65 16 25 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 26 H 0.00 0.00 6.40 -2.39 -0.02 -0.01 16 27 H 0.00 -0.10 7.73 -2.39 -0.02 -0.12 16 28 H 0.07 2.35 7.97 -2.38 -0.02 2.33 16 29 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.06 2.53 7.09 -2.39 -0.02 2.52 16 31 H 0.07 3.04 7.20 -2.39 -0.02 3.02 16 32 H 0.25 15.55 5.97 -92.71 -0.55 14.99 16 33 H 0.34 18.09 5.83 -89.70 -0.52 17.56 16 Total: -1.00 -62.99 251.07 -0.35 -63.34 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.77 Total: 22.37 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 3.70 Total: -19.29 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -6.88 Total: -118.17 kcal Atomic # 14 Polarization: 49.69 SS G_CDS: 2.05 Total: 51.74 kcal Total: -62.99 -0.35 -63.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218745062.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.873 kcal (2) G-P(sol) polarization free energy of solvation -62.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds