Wall clock time and date at job start Mon Mar 30 2020 02:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.78476 * 2 1 4 4 C 1.53696 * 109.70074 * 120.73820 * 2 1 3 5 5 N 1.46903 * 109.25312 * 173.69111 * 4 2 1 6 6 C 1.46898 * 110.99876 * 172.61080 * 5 4 2 7 7 C 1.46903 * 111.26670 * 296.75448 * 5 4 2 8 8 C 1.53234 * 109.33951 * 63.10953 * 7 5 4 9 9 H 1.09004 * 109.63140 * 186.46223 * 8 7 5 10 10 C 1.53004 * 109.63195 * 65.87558 * 8 7 5 11 11 N 1.47075 * 109.62624 * 239.51740 * 2 1 3 12 12 C 1.36937 * 120.88518 * 9.09696 * 11 2 1 13 13 H 1.07999 * 119.99746 * 333.34618 * 12 11 2 14 14 C 1.38811 * 119.99865 * 153.06703 * 12 11 2 15 15 N 1.31621 * 119.99948 * 344.12455 * 14 12 11 16 16 Si 1.86797 * 119.99893 * 164.12153 * 14 12 11 17 17 H 1.48506 * 109.46940 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47248 * 119.99940 * 16 14 12 19 19 H 1.48503 * 109.47253 * 240.00353 * 16 14 12 20 20 H 1.09002 * 109.46928 * 180.55624 * 1 2 3 21 21 H 1.09003 * 109.47410 * 300.55357 * 1 2 3 22 22 H 1.08993 * 109.47619 * 60.55384 * 1 2 3 23 23 H 1.08990 * 109.64971 * 53.68856 * 4 2 1 24 24 H 1.08992 * 109.44298 * 293.56501 * 4 2 1 25 25 H 1.09006 * 109.47091 * 184.30314 * 6 5 4 26 26 H 1.08998 * 109.46822 * 304.29563 * 6 5 4 27 27 H 1.08996 * 109.47536 * 64.30214 * 6 5 4 28 28 H 1.08999 * 109.49582 * 303.14833 * 7 5 4 29 29 H 1.09006 * 109.51543 * 183.07956 * 7 5 4 30 30 H 1.08998 * 109.47177 * 300.97555 * 10 8 7 31 31 H 1.09000 * 109.46451 * 60.97192 * 10 8 7 32 32 H 1.09000 * 109.47017 * 180.97118 * 10 8 7 33 33 H 0.97002 * 119.99576 * 185.09804 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0481 -0.7396 1.2437 5 7 3.5092 -0.8662 1.1584 6 6 4.0642 -1.4098 2.4051 7 6 3.9067 -1.6840 0.0046 8 6 3.4638 -0.9885 -1.2870 9 1 3.6529 -1.6424 -2.1384 10 6 4.2376 0.3204 -1.4574 11 7 2.0240 -0.7027 -1.1938 12 6 1.1671 -1.0762 -2.1946 13 1 0.1267 -1.2627 -1.9729 14 6 1.6345 -1.2093 -3.4948 15 7 2.7947 -0.6883 -3.8336 16 14 0.6170 -2.1281 -4.7636 17 1 -0.6377 -2.6135 -4.1346 18 1 0.2858 -1.2157 -5.8875 19 1 1.3934 -3.2850 -5.2774 20 1 -0.3633 -1.0276 0.0100 21 1 -0.3634 0.5224 0.8850 22 1 -0.3634 0.5052 -0.8948 23 1 1.5994 -1.7316 1.2936 24 1 1.7836 -0.1752 2.1378 25 1 5.1524 -1.4217 2.3436 26 1 3.7546 -0.7854 3.2432 27 1 3.6975 -2.4254 2.5537 28 1 3.4320 -2.6629 0.0718 29 1 4.9900 -1.8046 -0.0003 30 1 4.0517 0.9667 -0.5995 31 1 5.3040 0.1057 -1.5262 32 1 3.9082 0.8213 -2.3678 33 1 3.0876 -0.7165 -4.7580 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221620215.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:01 Heat of formation + Delta-G solvation = 11.726574 kcal Electronic energy + Delta-G solvation = -13824.873366 eV Core-core repulsion = 11692.606562 eV Total energy + Delta-G solvation = -2132.266804 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.00603 -36.26722 -34.21858 -33.09829 -29.79552 -27.89865 -27.45877 -25.74497 -23.38077 -22.30390 -20.34302 -18.00064 -17.12165 -16.13501 -15.96872 -15.67080 -15.55642 -14.89244 -14.55016 -13.71004 -13.38255 -13.32436 -13.05337 -12.82914 -12.78097 -12.49655 -12.26837 -12.17203 -12.14895 -11.83081 -11.62330 -11.21960 -10.99917 -10.45107 -9.18731 -8.50370 -7.77335 -5.18708 1.46271 1.49159 1.57882 2.54551 3.14039 3.37050 3.63147 4.24278 4.31411 4.36957 4.53879 4.61136 4.70251 4.73983 4.78901 4.87862 4.89791 4.99748 5.02877 5.10953 5.25825 5.33067 5.43563 5.55931 5.72770 5.78533 6.01590 6.24933 6.35013 6.51352 7.26176 7.97015 8.50441 9.29348 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042544 B = 0.013376 C = 0.011673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.989732 B = 2092.852205 C = 2398.157757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.161 3.839 3 H 0.019 0.981 4 C 0.057 3.943 5 N -0.548 5.548 6 C 0.027 3.973 7 C 0.053 3.947 8 C 0.192 3.808 9 H 0.060 0.940 10 C -0.116 4.116 11 N -0.603 5.603 12 C -0.251 4.251 13 H 0.072 0.928 14 C -0.052 4.052 15 N -0.927 5.927 16 Si 0.959 3.041 17 H -0.270 1.270 18 H -0.295 1.295 19 H -0.295 1.295 20 H 0.046 0.954 21 H 0.076 0.924 22 H 0.043 0.957 23 H 0.019 0.981 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.019 0.981 28 H 0.011 0.989 29 H 0.076 0.924 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 -0.921 9.982 10.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.055 3.945 3 H 0.036 0.964 4 C -0.073 4.073 5 N -0.272 5.272 6 C -0.120 4.120 7 C -0.076 4.076 8 C 0.085 3.915 9 H 0.078 0.922 10 C -0.175 4.175 11 N -0.326 5.326 12 C -0.381 4.381 13 H 0.090 0.910 14 C -0.247 4.247 15 N -0.574 5.574 16 Si 0.788 3.212 17 H -0.195 1.195 18 H -0.223 1.223 19 H -0.222 1.222 20 H 0.065 0.935 21 H 0.095 0.905 22 H 0.062 0.938 23 H 0.037 0.963 24 H 0.108 0.892 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.038 0.962 28 H 0.029 0.971 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.486 -0.526 9.795 9.821 hybrid contribution -0.630 -1.158 -1.071 1.699 sum -0.144 -1.684 8.723 8.886 Atomic orbital electron populations 1.21703 0.94499 1.01145 1.01257 1.20788 0.93692 0.93457 0.86576 0.96371 1.22619 0.87201 0.98571 0.98869 1.61889 1.10947 1.50915 1.03452 1.22417 1.00556 0.97589 0.91476 1.22586 0.99349 0.93499 0.92192 1.20350 0.82886 0.95000 0.93271 0.92236 1.21722 0.97321 0.98975 0.99477 1.44576 1.03688 1.65796 1.18585 1.19537 0.93243 1.37902 0.87408 0.91023 1.25693 0.98658 1.01601 0.98707 1.70127 1.22423 1.48558 1.16318 0.85322 0.78466 0.77997 0.79368 1.19472 1.22268 1.22225 0.93498 0.90501 0.93785 0.96261 0.89235 0.90849 0.90118 0.96229 0.97094 0.90582 0.94492 0.94566 0.94485 0.94489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 7.94 71.98 0.57 -4.14 16 2 C 0.16 6.75 3.27 45.12 0.15 6.90 16 3 H 0.02 0.83 7.61 -2.39 -0.02 0.81 16 4 C 0.06 2.01 4.94 86.54 0.43 2.44 16 5 N -0.55 -19.36 4.37 -920.54 -4.02 -23.38 16 6 C 0.03 0.73 9.58 127.69 1.22 1.95 16 7 C 0.05 2.13 5.01 86.38 0.43 2.56 16 8 C 0.19 9.31 2.35 44.96 0.11 9.41 16 9 H 0.06 3.33 6.08 -2.39 -0.01 3.32 16 10 C -0.12 -5.46 8.95 71.98 0.64 -4.81 16 11 N -0.60 -30.28 2.73 -649.79 -1.77 -32.06 16 12 C -0.25 -13.65 8.72 84.03 0.73 -12.91 16 13 H 0.07 3.80 6.17 -2.91 -0.02 3.78 16 14 C -0.05 -2.87 4.96 84.86 0.42 -2.45 16 15 N -0.93 -54.15 9.72 21.65 0.21 -53.94 16 16 Si 0.96 45.34 29.59 68.60 2.03 47.37 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 18 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 19 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 20 H 0.05 1.75 7.60 -2.39 -0.02 1.73 16 21 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 22 H 0.04 1.76 7.51 -2.39 -0.02 1.75 16 23 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.09 2.62 8.06 -2.39 -0.02 2.60 16 25 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 27 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.08 2.75 8.11 -2.38 -0.02 2.73 16 30 H 0.04 1.66 7.06 -2.39 -0.02 1.65 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.04 1.98 6.92 -2.39 -0.02 1.96 16 33 H 0.25 14.04 8.32 -92.71 -0.77 13.27 16 Total: -1.00 -60.97 253.82 2.21 -58.76 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: 1.05 Total: 4.30 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 4.71 Total: -1.06 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -5.58 Total: -109.38 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -60.97 2.21 -58.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221620215.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.491 kcal (2) G-P(sol) polarization free energy of solvation -60.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds