Wall clock time and date at job start Mon Mar 30 2020 02:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09007 * 109.48786 * 2 1 4 4 C 1.53053 * 109.50368 * 239.94897 * 2 1 3 5 5 N 1.46957 * 109.36210 * 181.61800 * 4 2 1 6 6 C 1.46901 * 110.99932 * 183.18396 * 5 4 2 7 7 C 1.46961 * 110.88025 * 59.31925 * 5 4 2 8 8 C 1.53050 * 109.36236 * 300.68052 * 7 5 4 9 9 N 1.46949 * 109.48900 * 120.04571 * 2 1 3 10 10 C 1.46901 * 110.99845 * 303.17434 * 9 2 1 11 11 C 1.50697 * 109.47237 * 302.24567 * 10 9 2 12 12 H 1.07996 * 119.99974 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99910 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00075 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00057 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47153 * 60.00038 * 15 13 11 17 17 H 1.48503 * 109.47118 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46937 * 300.00063 * 15 13 11 19 19 H 1.09001 * 109.46793 * 299.95346 * 1 2 3 20 20 H 1.09003 * 109.47036 * 59.95307 * 1 2 3 21 21 H 1.08993 * 109.46804 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.49306 * 61.65168 * 4 2 1 23 23 H 1.08997 * 109.48565 * 301.58333 * 4 2 1 24 24 H 1.09002 * 109.47401 * 292.24858 * 6 5 4 25 25 H 1.09001 * 109.46874 * 172.24870 * 6 5 4 26 26 H 1.09004 * 109.46970 * 52.25004 * 6 5 4 27 27 H 1.09007 * 109.48923 * 60.64600 * 7 5 4 28 28 H 1.08996 * 109.49126 * 180.70902 * 7 5 4 29 29 H 1.09000 * 109.48863 * 178.36777 * 8 7 5 30 30 H 1.09002 * 109.48815 * 298.40577 * 8 7 5 31 31 H 1.08996 * 109.47160 * 62.25052 * 10 9 2 32 32 H 1.09008 * 109.46959 * 182.25064 * 10 9 2 33 33 H 0.96998 * 119.99991 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0411 -0.7225 -1.2488 5 7 3.5101 -0.7546 -1.2262 6 6 4.0419 -1.3745 -2.4472 7 6 4.0005 -1.4483 -0.0269 8 6 3.4894 -0.7258 1.2217 9 7 2.0203 -0.6936 1.1991 10 6 1.4885 -0.0738 2.4202 11 6 1.8786 1.3814 2.4557 12 1 2.4627 1.8037 1.6515 13 6 1.4897 2.1737 3.5150 14 7 0.7779 1.6596 4.4942 15 14 1.9725 3.9776 3.5588 16 1 1.4131 4.6688 2.3695 17 1 1.4350 4.6042 4.7932 18 1 3.4530 4.0942 3.5482 19 1 -0.3633 0.5131 0.8904 20 1 -0.3633 0.5146 -0.8896 21 1 -0.3633 -1.0276 -0.0005 22 1 1.7026 -0.1930 -2.1394 23 1 1.6552 -1.7417 -1.2626 24 1 3.7858 -2.4339 -2.4582 25 1 5.1260 -1.2625 -2.4690 26 1 3.6087 -0.8869 -3.3206 27 1 3.6368 -2.4759 -0.0269 28 1 5.0904 -1.4480 -0.0268 29 1 3.8279 -1.2552 2.1123 30 1 3.8757 0.2934 1.2359 31 1 0.4019 -0.1590 2.4273 32 1 1.8985 -0.5812 3.2935 33 1 0.5040 2.2170 5.2392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225143629.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:39 Heat of formation + Delta-G solvation = 7.316036 kcal Electronic energy + Delta-G solvation = -13442.682974 eV Core-core repulsion = 11310.224915 eV Total energy + Delta-G solvation = -2132.458059 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.79599 -35.20692 -32.44971 -31.60296 -28.68193 -26.42822 -25.77257 -23.42306 -21.99037 -20.85041 -18.83887 -16.17452 -15.41196 -14.94550 -14.56201 -14.48314 -14.19724 -13.62505 -12.85103 -12.33498 -12.01607 -11.96215 -11.68361 -11.36601 -11.18626 -11.00648 -10.78825 -10.53610 -10.41378 -10.00849 -9.89384 -9.77484 -9.37120 -8.37820 -8.00986 -7.10577 -5.98500 -4.07106 3.31928 3.36375 3.39731 4.29865 4.44507 5.03812 5.31409 5.33772 5.43343 5.63509 5.66365 5.88711 5.93500 5.97477 5.99171 6.07693 6.25626 6.30245 6.44839 6.63934 6.82944 6.98777 7.03393 7.27183 7.39088 7.46606 7.59093 7.95623 8.13007 8.34454 8.37031 9.03628 9.59460 11.06318 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045160 B = 0.010313 C = 0.009966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.864746 B = 2714.381932 C = 2808.822135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.090 3.910 3 H 0.056 0.944 4 C 0.063 3.937 5 N -0.545 5.545 6 C 0.027 3.973 7 C 0.059 3.941 8 C 0.064 3.936 9 N -0.540 5.540 10 C 0.185 3.815 11 C -0.545 4.545 12 H 0.058 0.942 13 C 0.064 3.936 14 N -0.893 5.893 15 Si 0.888 3.112 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 H 0.074 0.926 20 H 0.043 0.957 21 H 0.048 0.952 22 H 0.067 0.933 23 H 0.033 0.967 24 H 0.020 0.980 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.033 0.967 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.027 0.973 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.412 -4.655 -9.869 11.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.020 4.020 3 H 0.073 0.927 4 C -0.065 4.065 5 N -0.270 5.270 6 C -0.121 4.121 7 C -0.070 4.070 8 C -0.065 4.065 9 N -0.265 5.265 10 C 0.060 3.940 11 C -0.584 4.584 12 H 0.076 0.924 13 C -0.138 4.138 14 N -0.532 5.532 15 Si 0.716 3.284 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 H 0.093 0.907 20 H 0.062 0.938 21 H 0.067 0.933 22 H 0.085 0.915 23 H 0.051 0.949 24 H 0.039 0.961 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.319 -4.623 -9.690 11.237 hybrid contribution 0.294 1.080 0.133 1.128 sum 3.613 -3.542 -9.557 10.813 Atomic orbital electron populations 1.21762 0.94945 1.01084 1.01875 1.21408 0.94664 0.96770 0.89110 0.92652 1.22287 0.86485 0.99133 0.98622 1.62119 1.09253 1.53482 1.02109 1.22319 1.00342 0.96580 0.92902 1.22234 0.98728 0.95676 0.90322 1.21919 0.89911 0.99535 0.95165 1.62693 1.06679 1.53283 1.03877 1.19775 0.96074 0.92050 0.86098 1.21727 1.34363 0.96090 1.06264 0.92436 1.24953 0.94963 0.98360 0.95514 1.69936 1.37149 1.36139 1.09930 0.86721 0.78892 0.85497 0.77307 1.20268 1.21293 1.20300 0.90682 0.93752 0.93311 0.91478 0.94887 0.96133 0.91835 0.91898 0.94861 0.91397 0.91382 0.93525 0.94544 0.95451 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 8.86 37.16 0.33 -2.29 16 2 C 0.09 1.82 2.16 -67.65 -0.15 1.67 16 3 H 0.06 1.27 6.45 -51.93 -0.33 0.94 16 4 C 0.06 1.07 4.90 -3.77 -0.02 1.05 16 5 N -0.55 -9.07 4.97 -242.75 -1.21 -10.27 16 6 C 0.03 0.35 9.63 60.07 0.58 0.93 16 7 C 0.06 0.98 5.62 -3.76 -0.02 0.96 16 8 C 0.06 1.29 5.33 -3.77 -0.02 1.27 16 9 N -0.54 -11.91 4.73 -227.92 -1.08 -12.99 16 10 C 0.19 4.80 4.61 -4.98 -0.02 4.78 16 11 C -0.55 -15.05 7.66 -34.44 -0.26 -15.32 16 12 H 0.06 1.61 5.80 -52.49 -0.30 1.30 16 13 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 14 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 15 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H 0.07 1.62 6.39 -51.93 -0.33 1.29 16 20 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 22 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.73 8.07 -51.93 -0.42 0.32 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.35 8.11 -51.93 -0.42 0.93 16 30 H 0.05 1.05 6.95 -51.93 -0.36 0.69 16 31 H 0.04 1.00 6.38 -51.93 -0.33 0.67 16 32 H 0.03 0.76 8.10 -51.92 -0.42 0.34 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 257.71 15.07 3.88 3.88 Total: -1.00 -29.05 257.71 -7.81 -36.86 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -5.44 Total: -3.34 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 0.32 Total: -5.22 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -1.55 Total: -48.85 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.05 -7.81 -36.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225143629.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.175 kcal (2) G-P(sol) polarization free energy of solvation -29.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds