Wall clock time and date at job start Mon Mar 30 2020 02:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 110.99546 * 2 1 4 4 H 1.08995 * 110.90232 * 37.41113 * 3 2 1 5 5 C 1.55141 * 110.99076 * 273.54436 * 3 2 1 6 6 C 1.54321 * 103.01768 * 206.25513 * 5 3 2 7 7 N 1.47445 * 107.23051 * 22.28384 * 6 5 3 8 8 C 1.46906 * 110.99723 * 123.25799 * 7 6 5 9 9 H 1.09002 * 109.46715 * 301.62455 * 8 7 6 10 10 C 1.53001 * 109.47036 * 61.62220 * 8 7 6 11 11 C 1.50698 * 109.46957 * 181.62427 * 8 7 6 12 12 H 1.07993 * 120.00012 * 354.21679 * 11 8 7 13 13 C 1.37881 * 119.99801 * 174.21912 * 11 8 7 14 14 N 1.31512 * 120.00243 * 153.52205 * 13 11 8 15 15 Si 1.86806 * 120.00074 * 333.52180 * 13 11 8 16 16 H 1.48497 * 109.47099 * 270.00076 * 15 13 11 17 17 H 1.48500 * 109.46990 * 149.99877 * 15 13 11 18 18 H 1.48505 * 109.47012 * 30.00248 * 15 13 11 19 19 C 1.47834 * 108.56949 * 0.99185 * 7 6 5 20 20 H 1.09004 * 109.47320 * 60.00351 * 1 2 3 21 21 H 1.09008 * 109.46688 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47441 * 299.99976 * 1 2 3 23 23 H 1.00897 * 111.00131 * 236.04798 * 2 1 3 24 24 H 1.09005 * 110.70008 * 87.87694 * 5 3 2 25 25 H 1.08992 * 110.85611 * 324.71160 * 5 3 2 26 26 H 1.09002 * 109.88709 * 262.88006 * 6 5 3 27 27 H 1.08998 * 109.88636 * 141.69218 * 6 5 3 28 28 H 1.09006 * 109.46851 * 182.45809 * 10 8 7 29 29 H 1.09007 * 109.47222 * 302.45713 * 10 8 7 30 30 H 1.08992 * 109.47245 * 62.46179 * 10 8 7 31 31 H 0.97002 * 119.99967 * 354.95875 * 14 13 11 32 32 H 1.09003 * 110.37710 * 94.73124 * 19 7 6 33 33 H 1.09008 * 110.37595 * 217.07216 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3796 2.0244 0.6186 5 6 2.1109 1.9225 -1.4457 6 6 3.2355 2.9727 -1.3286 7 7 4.0361 2.6247 -0.1404 8 6 5.4492 2.4357 -0.4947 9 1 5.5337 1.6493 -1.2446 10 6 6.0125 3.7415 -1.0593 11 6 6.2272 2.0431 0.7349 12 1 5.7431 2.0346 1.7002 13 6 7.5569 1.6949 0.6272 14 7 8.3639 1.8557 1.6531 15 14 8.2122 0.9945 -0.9758 16 1 8.0828 -0.4847 -0.9592 17 1 9.6421 1.3646 -1.1297 18 1 7.4328 1.5470 -2.1127 19 6 3.4730 1.3988 0.4642 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8306 -0.5261 -0.7814 24 1 1.1767 2.3911 -1.7552 25 1 2.3928 1.1318 -2.1409 26 1 2.8039 3.9662 -1.2070 27 1 3.8628 2.9451 -2.2196 28 1 7.0483 3.5892 -1.3626 29 1 5.4223 4.0484 -1.9228 30 1 5.9681 4.5169 -0.2947 31 1 8.0421 2.2864 2.4605 32 1 4.0017 0.5182 0.0992 33 1 3.5282 1.4520 1.5516 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227670389.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:18 Heat of formation + Delta-G solvation = 6.226084 kcal Electronic energy + Delta-G solvation = -13246.075949 eV Core-core repulsion = 11113.570625 eV Total energy + Delta-G solvation = -2132.505323 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.78445 -35.43998 -33.02913 -30.98504 -28.63387 -27.49378 -24.70585 -24.01405 -21.43772 -20.37324 -19.05583 -17.46797 -15.93575 -15.43262 -14.69197 -13.88782 -13.53612 -13.30270 -13.08767 -12.76818 -12.69226 -11.89213 -11.73145 -11.53762 -11.37662 -10.88595 -10.70369 -10.47402 -10.39551 -10.23979 -10.15587 -9.73616 -8.91392 -8.27414 -8.12622 -7.26276 -6.43641 -3.96661 3.42523 3.44624 3.60282 4.25204 4.53851 4.90121 5.05109 5.18306 5.23501 5.34401 5.39660 5.53642 5.73359 5.80935 5.88221 6.05168 6.17647 6.39821 6.44288 6.56856 6.62419 6.65098 6.87347 6.96211 7.15952 7.38292 7.44350 7.80296 8.09428 8.40488 8.49108 9.06157 9.66711 10.94361 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044605 B = 0.010145 C = 0.009551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.584734 B = 2759.387800 C = 2930.848288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.684 5.684 3 C 0.073 3.927 4 H 0.087 0.913 5 C -0.171 4.171 6 C 0.042 3.958 7 N -0.520 5.520 8 C 0.187 3.813 9 H -0.008 1.008 10 C -0.134 4.134 11 C -0.600 4.600 12 H 0.064 0.936 13 C 0.039 3.961 14 N -0.896 5.896 15 Si 1.033 2.967 16 H -0.286 1.286 17 H -0.286 1.286 18 H -0.279 1.279 19 C 0.078 3.922 20 H 0.018 0.982 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.341 0.659 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.021 0.979 30 H 0.052 0.948 31 H 0.271 0.729 32 H 0.049 0.951 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.400 -1.221 -6.800 14.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.314 5.314 3 C -0.038 4.038 4 H 0.105 0.895 5 C -0.211 4.211 6 C -0.087 4.087 7 N -0.245 5.245 8 C 0.079 3.921 9 H 0.009 0.991 10 C -0.192 4.192 11 C -0.638 4.638 12 H 0.082 0.918 13 C -0.168 4.168 14 N -0.529 5.529 15 Si 0.861 3.139 16 H -0.213 1.213 17 H -0.212 1.212 18 H -0.205 1.205 19 C -0.051 4.051 20 H 0.037 0.963 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.159 0.841 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.994 -1.520 -6.442 12.832 hybrid contribution -1.492 0.287 -0.857 1.745 sum -12.486 -1.233 -7.299 14.515 Atomic orbital electron populations 1.22176 0.88286 1.01375 1.00145 1.60368 1.07225 1.13909 1.49886 1.22923 0.97823 0.88324 0.94746 0.89507 1.23463 0.99460 0.99915 0.98284 1.22746 0.94052 0.97817 0.94089 1.63604 1.03840 1.32902 1.24115 1.19803 0.84102 0.92203 0.95978 0.99106 1.22079 0.99034 0.99953 0.98162 1.21855 0.96705 1.51521 0.93701 0.91801 1.25588 0.93088 0.94836 1.03245 1.70800 1.36446 1.39428 1.06233 0.84142 0.76011 0.77112 0.76586 1.21270 1.21183 1.20496 1.22639 0.90121 0.92128 1.00184 0.96349 0.91783 0.91829 0.84126 0.91916 0.91964 0.91772 0.93227 0.93697 0.96016 0.92923 0.91923 0.93239 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 60.07 0.63 0.97 16 2 N -0.68 -9.61 6.73 -111.73 -0.75 -10.36 16 3 C 0.07 1.15 3.31 -65.57 -0.22 0.93 16 4 H 0.09 1.36 7.92 -51.93 -0.41 0.95 16 5 C -0.17 -2.53 6.52 -24.91 -0.16 -2.69 16 6 C 0.04 0.74 6.12 -2.83 -0.02 0.72 16 7 N -0.52 -11.26 5.02 -224.67 -1.13 -12.39 16 8 C 0.19 4.59 1.18 -68.86 -0.08 4.50 16 9 H -0.01 -0.21 6.37 -51.93 -0.33 -0.54 16 10 C -0.13 -3.08 8.76 37.16 0.33 -2.75 16 11 C -0.60 -17.05 8.12 -34.44 -0.28 -17.33 16 12 H 0.06 1.98 7.56 -52.49 -0.40 1.58 16 13 C 0.04 1.13 5.23 -17.82 -0.09 1.04 16 14 N -0.90 -27.59 13.70 55.43 0.76 -26.83 16 15 Si 1.03 25.38 26.63 -169.99 -4.53 20.86 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.42 6.13 56.52 0.35 -6.08 16 19 C 0.08 1.57 5.36 -2.30 -0.01 1.56 16 20 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 21 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 22 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 23 H 0.34 4.50 8.40 -39.29 -0.33 4.17 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.89 7.81 -51.93 -0.41 0.49 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.05 0.89 6.47 -51.93 -0.34 0.55 16 28 H 0.04 1.04 6.16 -51.93 -0.32 0.72 16 29 H 0.02 0.42 6.54 -51.92 -0.34 0.09 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.27 8.33 8.73 -40.82 -0.36 7.98 16 32 H 0.05 1.08 7.76 -51.93 -0.40 0.68 16 33 H 0.07 1.63 7.92 -51.92 -0.41 1.21 16 LS Contribution 258.02 15.07 3.89 3.89 Total: -1.00 -29.94 258.02 -7.09 -37.03 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.42 Total: 0.86 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 0.10 Total: -13.05 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -1.12 Total: -49.59 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -4.53 Total: 20.86 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.94 -7.09 -37.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227670389.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.252 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds