Wall clock time and date at job start Mon Mar 30 2020 02:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46906 * 110.99546 * 2 1 4 4 H 1.08995 * 110.90232 * 37.41113 * 3 2 1 5 5 C 1.55141 * 110.99076 * 273.54436 * 3 2 1 6 6 C 1.54321 * 103.01768 * 206.25513 * 5 3 2 7 7 N 1.47445 * 107.23051 * 22.28384 * 6 5 3 8 8 C 1.46906 * 110.99723 * 123.25799 * 7 6 5 9 9 H 1.09002 * 109.46715 * 301.62455 * 8 7 6 10 10 C 1.53001 * 109.47036 * 61.62220 * 8 7 6 11 11 C 1.50698 * 109.46957 * 181.62427 * 8 7 6 12 12 H 1.07993 * 120.00012 * 354.21679 * 11 8 7 13 13 C 1.37881 * 119.99801 * 174.21912 * 11 8 7 14 14 N 1.31512 * 120.00243 * 153.52205 * 13 11 8 15 15 Si 1.86806 * 120.00074 * 333.52180 * 13 11 8 16 16 H 1.48497 * 109.47099 * 270.00076 * 15 13 11 17 17 H 1.48500 * 109.46990 * 149.99877 * 15 13 11 18 18 H 1.48505 * 109.47012 * 30.00248 * 15 13 11 19 19 C 1.47834 * 108.56949 * 0.99185 * 7 6 5 20 20 H 1.09004 * 109.47320 * 60.00351 * 1 2 3 21 21 H 1.09008 * 109.46688 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47441 * 299.99976 * 1 2 3 23 23 H 1.00897 * 111.00131 * 236.04798 * 2 1 3 24 24 H 1.09005 * 110.70008 * 87.87694 * 5 3 2 25 25 H 1.08992 * 110.85611 * 324.71160 * 5 3 2 26 26 H 1.09002 * 109.88709 * 262.88006 * 6 5 3 27 27 H 1.08998 * 109.88636 * 141.69218 * 6 5 3 28 28 H 1.09006 * 109.46851 * 182.45809 * 10 8 7 29 29 H 1.09007 * 109.47222 * 302.45713 * 10 8 7 30 30 H 1.08992 * 109.47245 * 62.46179 * 10 8 7 31 31 H 0.97002 * 119.99967 * 354.95875 * 14 13 11 32 32 H 1.09003 * 110.37710 * 94.73124 * 19 7 6 33 33 H 1.09008 * 110.37595 * 217.07216 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3796 2.0244 0.6186 5 6 2.1109 1.9225 -1.4457 6 6 3.2355 2.9727 -1.3286 7 7 4.0361 2.6247 -0.1404 8 6 5.4492 2.4357 -0.4947 9 1 5.5337 1.6493 -1.2446 10 6 6.0125 3.7415 -1.0593 11 6 6.2272 2.0431 0.7349 12 1 5.7431 2.0346 1.7002 13 6 7.5569 1.6949 0.6272 14 7 8.3639 1.8557 1.6531 15 14 8.2122 0.9945 -0.9758 16 1 8.0828 -0.4847 -0.9592 17 1 9.6421 1.3646 -1.1297 18 1 7.4328 1.5470 -2.1127 19 6 3.4730 1.3988 0.4642 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8306 -0.5261 -0.7814 24 1 1.1767 2.3911 -1.7552 25 1 2.3928 1.1318 -2.1409 26 1 2.8039 3.9662 -1.2070 27 1 3.8628 2.9451 -2.2196 28 1 7.0483 3.5892 -1.3626 29 1 5.4223 4.0484 -1.9228 30 1 5.9681 4.5169 -0.2947 31 1 8.0421 2.2864 2.4605 32 1 4.0017 0.5182 0.0992 33 1 3.5282 1.4520 1.5516 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227670389.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:17 Heat of formation + Delta-G solvation = -17.455767 kcal Electronic energy + Delta-G solvation = -13247.102871 eV Core-core repulsion = 11113.570625 eV Total energy + Delta-G solvation = -2133.532246 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.26547 -36.89172 -34.91775 -32.77806 -30.13561 -28.94242 -26.68621 -25.18328 -23.10000 -21.72298 -20.83093 -19.61058 -17.35757 -16.89078 -16.11334 -15.51416 -14.93366 -14.88245 -14.77739 -14.17227 -14.03097 -13.84320 -13.18787 -12.94604 -12.76152 -12.59863 -12.31698 -12.19883 -12.09766 -11.90681 -11.66732 -11.53190 -11.05210 -10.36140 -9.34866 -8.97951 -8.75705 -6.28801 1.44633 1.49268 1.68779 2.48746 2.98189 3.05610 3.49244 3.76417 3.88395 4.09463 4.37136 4.47931 4.55887 4.62896 4.64918 4.74125 4.79070 4.83427 4.84945 5.01747 5.03630 5.11803 5.12988 5.22329 5.51373 5.88678 6.04304 6.08868 6.24328 6.42373 6.58447 6.76652 7.43913 8.60678 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044605 B = 0.010145 C = 0.009551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.584734 B = 2759.387800 C = 2930.848288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.699 5.699 3 C 0.088 3.912 4 H 0.090 0.910 5 C -0.157 4.157 6 C 0.037 3.963 7 N -0.540 5.540 8 C 0.189 3.811 9 H -0.008 1.008 10 C -0.130 4.130 11 C -0.602 4.602 12 H 0.019 0.981 13 C -0.012 4.012 14 N -0.928 5.928 15 Si 1.078 2.922 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.250 1.250 19 C 0.077 3.923 20 H 0.033 0.967 21 H 0.079 0.921 22 H 0.062 0.938 23 H 0.346 0.654 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.037 0.963 31 H 0.254 0.746 32 H 0.028 0.972 33 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.153 -1.396 -9.512 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.329 5.329 3 C -0.023 4.023 4 H 0.108 0.892 5 C -0.196 4.196 6 C -0.091 4.091 7 N -0.265 5.265 8 C 0.080 3.920 9 H 0.009 0.991 10 C -0.188 4.188 11 C -0.639 4.639 12 H 0.038 0.962 13 C -0.211 4.211 14 N -0.562 5.562 15 Si 0.899 3.101 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.174 1.174 19 C -0.051 4.051 20 H 0.051 0.949 21 H 0.098 0.902 22 H 0.081 0.919 23 H 0.165 0.835 24 H 0.112 0.888 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.789 -1.689 -9.156 15.819 hybrid contribution -1.028 0.352 0.102 1.091 sum -13.817 -1.338 -9.054 16.573 Atomic orbital electron populations 1.22235 0.86059 1.02713 1.00775 1.60281 1.09287 1.12770 1.50552 1.22656 0.94480 0.89678 0.95515 0.89186 1.23383 0.99663 0.99244 0.97360 1.22859 0.94521 0.99448 0.92245 1.63444 1.03010 1.33477 1.26553 1.19652 0.85646 0.92869 0.93788 0.99098 1.21971 0.99342 0.98446 0.98998 1.21994 0.97188 1.51090 0.93660 0.96234 1.27031 0.93782 0.94559 1.05775 1.70934 1.37159 1.41555 1.06593 0.83595 0.75963 0.77200 0.73372 1.19977 1.20835 1.17361 1.22528 0.93513 0.90845 0.98246 0.94871 0.90186 0.91931 0.83523 0.88821 0.91142 0.90394 0.92928 0.94083 0.92456 0.94389 0.93693 0.95394 0.93996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.57 127.69 1.35 1.94 16 2 N -0.70 -18.11 6.73 -507.40 -3.41 -21.52 16 3 C 0.09 2.61 3.31 46.30 0.15 2.76 16 4 H 0.09 2.63 7.92 -2.39 -0.02 2.61 16 5 C -0.16 -4.03 6.52 31.78 0.21 -3.83 16 6 C 0.04 1.21 6.12 86.65 0.53 1.74 16 7 N -0.54 -23.09 5.02 -864.73 -4.34 -27.43 16 8 C 0.19 9.16 1.18 44.17 0.05 9.22 16 9 H -0.01 -0.40 6.37 -2.39 -0.02 -0.42 16 10 C -0.13 -5.73 8.76 71.98 0.63 -5.10 16 11 C -0.60 -35.26 8.12 25.60 0.21 -35.05 16 12 H 0.02 1.28 7.56 -2.91 -0.02 1.26 16 13 C -0.01 -0.69 5.23 84.66 0.44 -0.25 16 14 N -0.93 -59.07 13.70 21.45 0.29 -58.78 16 15 Si 1.08 50.65 26.63 68.60 1.83 52.48 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.25 -10.48 6.13 99.48 0.61 -9.87 16 19 C 0.08 3.17 5.36 86.78 0.46 3.64 16 20 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 21 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 22 H 0.06 1.21 8.09 -2.39 -0.02 1.19 16 23 H 0.35 8.30 8.40 -89.70 -0.75 7.55 16 24 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.07 1.73 7.81 -2.39 -0.02 1.71 16 26 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.05 1.68 6.47 -2.39 -0.02 1.67 16 28 H 0.04 1.81 6.16 -2.38 -0.01 1.80 16 29 H 0.06 2.10 6.54 -2.38 -0.02 2.09 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.25 16.52 8.73 -92.71 -0.81 15.71 16 32 H 0.03 1.24 7.76 -2.39 -0.02 1.22 16 33 H 0.04 1.93 7.92 -2.38 -0.02 1.91 16 Total: -1.00 -66.62 258.02 -1.41 -68.03 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.19 Total: 12.13 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 4.04 Total: -24.91 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -7.46 Total: -107.73 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 1.83 Total: 52.48 kcal Total: -66.62 -1.41 -68.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227670389.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.576 kcal (2) G-P(sol) polarization free energy of solvation -66.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds