Wall clock time and date at job start Mon Mar 30 2020 02:41:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09000 * 109.49959 * 2 1
4 4 C 1.53037 * 109.53588 * 239.90329 * 2 1 3
5 5 N 1.46851 * 109.51851 * 180.85591 * 4 2 1
6 6 C 1.46901 * 110.99811 * 185.83502 * 5 4 2
7 7 C 1.46851 * 111.19715 * 61.74136 * 5 4 2
8 8 C 1.53036 * 109.52435 * 298.25660 * 7 5 4
9 9 C 1.53116 * 109.50281 * 120.07526 * 2 1 3
10 10 H 1.09002 * 109.52331 * 297.54129 * 9 2 1
11 11 N 1.46493 * 109.57646 * 57.70290 * 9 2 1
12 12 C 1.36937 * 120.00549 * 204.71485 * 11 9 2
13 13 H 1.08002 * 119.99555 * 359.97438 * 12 11 9
14 14 C 1.38808 * 120.00255 * 180.02562 * 12 11 9
15 15 N 1.31620 * 120.00146 * 179.97438 * 14 12 11
16 16 Si 1.86803 * 120.00107 * 359.97438 * 14 12 11
17 17 H 1.48493 * 109.46886 * 90.00060 * 16 14 12
18 18 H 1.48501 * 109.46713 * 210.00222 * 16 14 12
19 19 H 1.48504 * 109.46942 * 329.99918 * 16 14 12
20 20 H 1.08989 * 109.47717 * 299.92009 * 1 2 3
21 21 H 1.09001 * 109.47101 * 59.92814 * 1 2 3
22 22 H 1.09008 * 109.46996 * 179.97438 * 1 2 3
23 23 H 1.08992 * 109.46378 * 60.84562 * 4 2 1
24 24 H 1.08994 * 109.46214 * 300.86986 * 4 2 1
25 25 H 1.09002 * 109.47401 * 291.83856 * 6 5 4
26 26 H 1.09001 * 109.46874 * 171.83869 * 6 5 4
27 27 H 1.09004 * 109.46970 * 51.84002 * 6 5 4
28 28 H 1.09008 * 109.46277 * 58.27072 * 7 5 4
29 29 H 1.09004 * 109.46518 * 178.23714 * 7 5 4
30 30 H 1.09000 * 109.50296 * 179.11929 * 8 7 5
31 31 H 1.08997 * 109.50225 * 299.23606 * 8 7 5
32 32 H 0.97011 * 120.00054 * 24.71282 * 11 9 2
33 33 H 0.96999 * 120.00360 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8938 1.0275 0.0000
4 6 2.0417 -0.7232 -1.2478
5 7 3.5101 -0.7409 -1.2371
6 6 4.0389 -1.3046 -2.4864
7 6 4.0238 -1.4714 -0.0713
8 6 3.5712 -0.7705 1.2116
9 6 2.0412 -0.7233 1.2490
10 1 1.7150 -0.1866 2.1399
11 7 1.5099 -2.0882 1.2778
12 6 1.3871 -2.7502 2.4702
13 1 1.6824 -2.2662 3.3894
14 6 0.8842 -4.0437 2.4973
15 7 0.7666 -4.6802 3.6433
16 14 0.3741 -4.8811 0.9073
17 1 1.5354 -5.6102 0.3373
18 1 -0.7255 -5.8402 1.1837
19 1 -0.0932 -3.8585 -0.0629
20 1 -0.3634 0.5125 0.8906
21 1 -0.3633 0.5150 -0.8893
22 1 -0.3633 -1.0277 -0.0005
23 1 1.6914 -0.2024 -2.1388
24 1 1.6663 -1.7464 -1.2542
25 1 3.7997 -2.3669 -2.5356
26 1 5.1207 -1.1740 -2.5146
27 1 3.5886 -0.7910 -3.3359
28 1 3.6390 -2.4912 -0.0832
29 1 5.1130 -1.4940 -0.1079
30 1 3.9395 -1.3217 2.0768
31 1 3.9672 0.2449 1.2306
32 1 1.2450 -2.5231 0.4521
33 1 0.4148 -5.5840 3.6624
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000229606207.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:41:01
Heat of formation + Delta-G solvation = 10.357630 kcal
Electronic energy + Delta-G solvation = -13598.042610 eV
Core-core repulsion = 11465.716444 eV
Total energy + Delta-G solvation = -2132.326166 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 198.143 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-39.04200 -34.94311 -32.73194 -31.44468 -29.84372 -26.65158 -25.74182 -23.27738
-21.98733 -21.19339 -18.27614 -17.77750 -15.32919 -14.91734 -14.67650 -14.34350
-13.99545 -13.57743 -13.17909 -12.50294 -12.25967 -12.13622 -11.86015 -11.54520
-11.43422 -11.08913 -10.91944 -10.63718 -10.37550 -10.20926 -10.07265 -9.60389
-9.49682 -8.87789 -8.01482 -7.21289 -5.75532 -3.09219 3.34605 3.37453
3.43335 4.24847 4.58985 5.15005 5.28261 5.33347 5.47228 5.55688
5.61864 5.71170 5.78972 5.83044 5.91297 5.95291 6.05845 6.10496
6.17348 6.39727 6.48588 6.56560 6.64948 6.76240 6.86351 6.91732
7.39461 7.43074 8.02792 8.44354 9.23322 9.96273 10.17122 11.43336
Molecular weight = 198.14amu
Principal moments of inertia in cm(-1)
A = 0.034856 B = 0.012938 C = 0.012446
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 803.115374 B = 2163.702717 C = 2249.266239
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.095 4.095
3 H 0.075 0.925
4 C 0.062 3.938
5 N -0.544 5.544
6 C 0.025 3.975
7 C 0.062 3.938
8 C -0.131 4.131
9 C 0.182 3.818
10 H 0.057 0.943
11 N -0.745 5.745
12 C -0.236 4.236
13 H 0.091 0.909
14 C 0.004 3.996
15 N -0.935 5.935
16 Si 0.878 3.122
17 H -0.286 1.286
18 H -0.291 1.291
19 H -0.279 1.279
20 H 0.056 0.944
21 H 0.042 0.958
22 H 0.060 0.940
23 H 0.065 0.935
24 H 0.032 0.968
25 H 0.022 0.978
26 H 0.064 0.936
27 H 0.062 0.938
28 H 0.041 0.959
29 H 0.061 0.939
30 H 0.069 0.931
31 H 0.055 0.945
32 H 0.358 0.642
33 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.664 8.327 -10.533 13.918
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.114 4.114
3 H 0.093 0.907
4 C -0.066 4.066
5 N -0.268 5.268
6 C -0.123 4.123
7 C -0.066 4.066
8 C -0.172 4.172
9 C 0.072 3.928
10 H 0.075 0.925
11 N -0.389 5.389
12 C -0.366 4.366
13 H 0.108 0.892
14 C -0.192 4.192
15 N -0.584 5.584
16 Si 0.709 3.291
17 H -0.213 1.213
18 H -0.217 1.217
19 H -0.205 1.205
20 H 0.075 0.925
21 H 0.061 0.939
22 H 0.079 0.921
23 H 0.084 0.916
24 H 0.050 0.950
25 H 0.040 0.960
26 H 0.083 0.917
27 H 0.081 0.919
28 H 0.059 0.941
29 H 0.080 0.920
30 H 0.088 0.912
31 H 0.074 0.926
32 H 0.192 0.808
33 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 3.816 8.735 -10.247 13.996
hybrid contribution -0.621 -1.702 -1.183 2.163
sum 3.195 7.033 -11.430 13.796
Atomic orbital electron populations
1.21708 0.94971 1.02468 1.00581 1.21423 0.95480 0.99523 0.95021
0.90677 1.22094 0.87138 0.99075 0.98261 1.61995 1.08187 1.54211
1.02451 1.22324 1.00407 0.97320 0.92287 1.21999 0.98386 0.96103
0.90114 1.22156 0.99218 0.99391 0.96415 1.20265 0.91035 0.86254
0.95205 0.92539 1.42851 1.77218 1.12707 1.06079 1.19096 1.35142
0.96044 0.86282 0.89162 1.24627 1.01640 0.96952 0.95950 1.69689
1.52250 1.12985 1.23454 0.86647 0.78329 0.79578 0.84548 1.21328
1.21701 1.20521 0.92489 0.93855 0.92051 0.91644 0.95004 0.95974
0.91714 0.91939 0.94082 0.92040 0.91187 0.92618 0.80785 0.93159
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.22 9.02 37.16 0.34 -1.89 16
2 C -0.09 -1.56 2.67 -90.54 -0.24 -1.80 16
3 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16
4 C 0.06 1.00 4.59 -3.83 -0.02 0.98 16
5 N -0.54 -8.56 4.91 -242.95 -1.19 -9.75 16
6 C 0.03 0.33 9.62 60.07 0.58 0.91 16
7 C 0.06 1.06 5.32 -3.83 -0.02 1.04 16
8 C -0.13 -2.36 5.77 -26.65 -0.15 -2.52 16
9 C 0.18 3.54 2.59 -67.81 -0.18 3.36 16
10 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16
11 N -0.74 -17.42 3.48 -53.31 -0.19 -17.61 16
12 C -0.24 -6.58 10.41 -15.06 -0.16 -6.73 16
13 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16
14 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16
15 N -0.94 -29.46 13.97 55.49 0.78 -28.68 16
16 Si 0.88 22.36 27.74 -169.99 -4.71 17.64 16
17 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16
18 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16
19 H -0.28 -6.71 6.52 56.52 0.37 -6.35 16
20 H 0.06 0.89 8.14 -51.94 -0.42 0.47 16
21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16
22 H 0.06 1.12 7.30 -51.92 -0.38 0.75 16
23 H 0.07 0.92 8.04 -51.93 -0.42 0.51 16
24 H 0.03 0.58 6.64 -51.93 -0.34 0.23 16
25 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16
26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
27 H 0.06 0.72 8.02 -51.93 -0.42 0.30 16
28 H 0.04 0.81 7.69 -51.92 -0.40 0.41 16
29 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16
30 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16
31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16
32 H 0.36 8.42 3.72 -40.82 -0.15 8.27 16
33 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16
LS Contribution 257.29 15.07 3.88 3.88
Total: -1.00 -30.14 257.29 -6.89 -37.03
By element:
Atomic # 1 Polarization: 9.62 SS G_CDS: -5.50 Total: 4.12 kcal
Atomic # 6 Polarization: -6.68 SS G_CDS: 0.05 Total: -6.63 kcal
Atomic # 7 Polarization: -55.44 SS G_CDS: -0.60 Total: -56.04 kcal
Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.64 kcal
Total LS contribution 3.88 Total: 3.88 kcal
Total: -30.14 -6.89 -37.03 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000229606207.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.388 kcal
(2) G-P(sol) polarization free energy of solvation -30.141 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.248 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.031 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.358 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds