Wall clock time and date at job start Mon Mar 30 2020 02:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.49959 * 2 1 4 4 C 1.53037 * 109.53588 * 239.90329 * 2 1 3 5 5 N 1.46851 * 109.51851 * 180.85591 * 4 2 1 6 6 C 1.46901 * 110.99811 * 185.83502 * 5 4 2 7 7 C 1.46851 * 111.19715 * 61.74136 * 5 4 2 8 8 C 1.53036 * 109.52435 * 298.25660 * 7 5 4 9 9 C 1.53116 * 109.50281 * 120.07526 * 2 1 3 10 10 H 1.09002 * 109.52331 * 297.54129 * 9 2 1 11 11 N 1.46493 * 109.57646 * 57.70290 * 9 2 1 12 12 C 1.36937 * 120.00549 * 204.71485 * 11 9 2 13 13 H 1.08002 * 119.99555 * 359.97438 * 12 11 9 14 14 C 1.38808 * 120.00255 * 180.02562 * 12 11 9 15 15 N 1.31620 * 120.00146 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00107 * 359.97438 * 14 12 11 17 17 H 1.48493 * 109.46886 * 90.00060 * 16 14 12 18 18 H 1.48501 * 109.46713 * 210.00222 * 16 14 12 19 19 H 1.48504 * 109.46942 * 329.99918 * 16 14 12 20 20 H 1.08989 * 109.47717 * 299.92009 * 1 2 3 21 21 H 1.09001 * 109.47101 * 59.92814 * 1 2 3 22 22 H 1.09008 * 109.46996 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.46378 * 60.84562 * 4 2 1 24 24 H 1.08994 * 109.46214 * 300.86986 * 4 2 1 25 25 H 1.09002 * 109.47401 * 291.83856 * 6 5 4 26 26 H 1.09001 * 109.46874 * 171.83869 * 6 5 4 27 27 H 1.09004 * 109.46970 * 51.84002 * 6 5 4 28 28 H 1.09008 * 109.46277 * 58.27072 * 7 5 4 29 29 H 1.09004 * 109.46518 * 178.23714 * 7 5 4 30 30 H 1.09000 * 109.50296 * 179.11929 * 8 7 5 31 31 H 1.08997 * 109.50225 * 299.23606 * 8 7 5 32 32 H 0.97011 * 120.00054 * 24.71282 * 11 9 2 33 33 H 0.96999 * 120.00360 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0417 -0.7232 -1.2478 5 7 3.5101 -0.7409 -1.2371 6 6 4.0389 -1.3046 -2.4864 7 6 4.0238 -1.4714 -0.0713 8 6 3.5712 -0.7705 1.2116 9 6 2.0412 -0.7233 1.2490 10 1 1.7150 -0.1866 2.1399 11 7 1.5099 -2.0882 1.2778 12 6 1.3871 -2.7502 2.4702 13 1 1.6824 -2.2662 3.3894 14 6 0.8842 -4.0437 2.4973 15 7 0.7666 -4.6802 3.6433 16 14 0.3741 -4.8811 0.9073 17 1 1.5354 -5.6102 0.3373 18 1 -0.7255 -5.8402 1.1837 19 1 -0.0932 -3.8585 -0.0629 20 1 -0.3634 0.5125 0.8906 21 1 -0.3633 0.5150 -0.8893 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6914 -0.2024 -2.1388 24 1 1.6663 -1.7464 -1.2542 25 1 3.7997 -2.3669 -2.5356 26 1 5.1207 -1.1740 -2.5146 27 1 3.5886 -0.7910 -3.3359 28 1 3.6390 -2.4912 -0.0832 29 1 5.1130 -1.4940 -0.1079 30 1 3.9395 -1.3217 2.0768 31 1 3.9672 0.2449 1.2306 32 1 1.2450 -2.5231 0.4521 33 1 0.4148 -5.5840 3.6624 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229606207.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:01 Heat of formation + Delta-G solvation = 10.357630 kcal Electronic energy + Delta-G solvation = -13598.042610 eV Core-core repulsion = 11465.716444 eV Total energy + Delta-G solvation = -2132.326166 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.04200 -34.94311 -32.73194 -31.44468 -29.84372 -26.65158 -25.74182 -23.27738 -21.98733 -21.19339 -18.27614 -17.77750 -15.32919 -14.91734 -14.67650 -14.34350 -13.99545 -13.57743 -13.17909 -12.50294 -12.25967 -12.13622 -11.86015 -11.54520 -11.43422 -11.08913 -10.91944 -10.63718 -10.37550 -10.20926 -10.07265 -9.60389 -9.49682 -8.87789 -8.01482 -7.21289 -5.75532 -3.09219 3.34605 3.37453 3.43335 4.24847 4.58985 5.15005 5.28261 5.33347 5.47228 5.55688 5.61864 5.71170 5.78972 5.83044 5.91297 5.95291 6.05845 6.10496 6.17348 6.39727 6.48588 6.56560 6.64948 6.76240 6.86351 6.91732 7.39461 7.43074 8.02792 8.44354 9.23322 9.96273 10.17122 11.43336 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034856 B = 0.012938 C = 0.012446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.115374 B = 2163.702717 C = 2249.266239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 H 0.075 0.925 4 C 0.062 3.938 5 N -0.544 5.544 6 C 0.025 3.975 7 C 0.062 3.938 8 C -0.131 4.131 9 C 0.182 3.818 10 H 0.057 0.943 11 N -0.745 5.745 12 C -0.236 4.236 13 H 0.091 0.909 14 C 0.004 3.996 15 N -0.935 5.935 16 Si 0.878 3.122 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.279 1.279 20 H 0.056 0.944 21 H 0.042 0.958 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.032 0.968 25 H 0.022 0.978 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.358 0.642 33 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.664 8.327 -10.533 13.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.093 0.907 4 C -0.066 4.066 5 N -0.268 5.268 6 C -0.123 4.123 7 C -0.066 4.066 8 C -0.172 4.172 9 C 0.072 3.928 10 H 0.075 0.925 11 N -0.389 5.389 12 C -0.366 4.366 13 H 0.108 0.892 14 C -0.192 4.192 15 N -0.584 5.584 16 Si 0.709 3.291 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.205 1.205 20 H 0.075 0.925 21 H 0.061 0.939 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.050 0.950 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.192 0.808 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.816 8.735 -10.247 13.996 hybrid contribution -0.621 -1.702 -1.183 2.163 sum 3.195 7.033 -11.430 13.796 Atomic orbital electron populations 1.21708 0.94971 1.02468 1.00581 1.21423 0.95480 0.99523 0.95021 0.90677 1.22094 0.87138 0.99075 0.98261 1.61995 1.08187 1.54211 1.02451 1.22324 1.00407 0.97320 0.92287 1.21999 0.98386 0.96103 0.90114 1.22156 0.99218 0.99391 0.96415 1.20265 0.91035 0.86254 0.95205 0.92539 1.42851 1.77218 1.12707 1.06079 1.19096 1.35142 0.96044 0.86282 0.89162 1.24627 1.01640 0.96952 0.95950 1.69689 1.52250 1.12985 1.23454 0.86647 0.78329 0.79578 0.84548 1.21328 1.21701 1.20521 0.92489 0.93855 0.92051 0.91644 0.95004 0.95974 0.91714 0.91939 0.94082 0.92040 0.91187 0.92618 0.80785 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.02 37.16 0.34 -1.89 16 2 C -0.09 -1.56 2.67 -90.54 -0.24 -1.80 16 3 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.06 1.00 4.59 -3.83 -0.02 0.98 16 5 N -0.54 -8.56 4.91 -242.95 -1.19 -9.75 16 6 C 0.03 0.33 9.62 60.07 0.58 0.91 16 7 C 0.06 1.06 5.32 -3.83 -0.02 1.04 16 8 C -0.13 -2.36 5.77 -26.65 -0.15 -2.52 16 9 C 0.18 3.54 2.59 -67.81 -0.18 3.36 16 10 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 11 N -0.74 -17.42 3.48 -53.31 -0.19 -17.61 16 12 C -0.24 -6.58 10.41 -15.06 -0.16 -6.73 16 13 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 14 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 15 N -0.94 -29.46 13.97 55.49 0.78 -28.68 16 16 Si 0.88 22.36 27.74 -169.99 -4.71 17.64 16 17 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 18 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 19 H -0.28 -6.71 6.52 56.52 0.37 -6.35 16 20 H 0.06 0.89 8.14 -51.94 -0.42 0.47 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 1.12 7.30 -51.92 -0.38 0.75 16 23 H 0.07 0.92 8.04 -51.93 -0.42 0.51 16 24 H 0.03 0.58 6.64 -51.93 -0.34 0.23 16 25 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.72 8.02 -51.93 -0.42 0.30 16 28 H 0.04 0.81 7.69 -51.92 -0.40 0.41 16 29 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.36 8.42 3.72 -40.82 -0.15 8.27 16 33 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 257.29 15.07 3.88 3.88 Total: -1.00 -30.14 257.29 -6.89 -37.03 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.50 Total: 4.12 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 0.05 Total: -6.63 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.60 Total: -56.04 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.64 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.14 -6.89 -37.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229606207.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.388 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds