Wall clock time and date at job start Mon Mar 30 2020 02:41:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09000 * 109.49959 * 2 1
4 4 C 1.53037 * 109.53588 * 239.90329 * 2 1 3
5 5 N 1.46851 * 109.51851 * 180.85591 * 4 2 1
6 6 C 1.46901 * 110.99811 * 185.83502 * 5 4 2
7 7 C 1.46851 * 111.19715 * 61.74136 * 5 4 2
8 8 C 1.53036 * 109.52435 * 298.25660 * 7 5 4
9 9 C 1.53116 * 109.50281 * 120.07526 * 2 1 3
10 10 H 1.09002 * 109.52331 * 297.54129 * 9 2 1
11 11 N 1.46493 * 109.57646 * 57.70290 * 9 2 1
12 12 C 1.36937 * 120.00549 * 204.71485 * 11 9 2
13 13 H 1.08002 * 119.99555 * 359.97438 * 12 11 9
14 14 C 1.38808 * 120.00255 * 180.02562 * 12 11 9
15 15 N 1.31620 * 120.00146 * 179.97438 * 14 12 11
16 16 Si 1.86803 * 120.00107 * 359.97438 * 14 12 11
17 17 H 1.48493 * 109.46886 * 90.00060 * 16 14 12
18 18 H 1.48501 * 109.46713 * 210.00222 * 16 14 12
19 19 H 1.48504 * 109.46942 * 329.99918 * 16 14 12
20 20 H 1.08989 * 109.47717 * 299.92009 * 1 2 3
21 21 H 1.09001 * 109.47101 * 59.92814 * 1 2 3
22 22 H 1.09008 * 109.46996 * 179.97438 * 1 2 3
23 23 H 1.08992 * 109.46378 * 60.84562 * 4 2 1
24 24 H 1.08994 * 109.46214 * 300.86986 * 4 2 1
25 25 H 1.09002 * 109.47401 * 291.83856 * 6 5 4
26 26 H 1.09001 * 109.46874 * 171.83869 * 6 5 4
27 27 H 1.09004 * 109.46970 * 51.84002 * 6 5 4
28 28 H 1.09008 * 109.46277 * 58.27072 * 7 5 4
29 29 H 1.09004 * 109.46518 * 178.23714 * 7 5 4
30 30 H 1.09000 * 109.50296 * 179.11929 * 8 7 5
31 31 H 1.08997 * 109.50225 * 299.23606 * 8 7 5
32 32 H 0.97011 * 120.00054 * 24.71282 * 11 9 2
33 33 H 0.96999 * 120.00360 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8938 1.0275 0.0000
4 6 2.0417 -0.7232 -1.2478
5 7 3.5101 -0.7409 -1.2371
6 6 4.0389 -1.3046 -2.4864
7 6 4.0238 -1.4714 -0.0713
8 6 3.5712 -0.7705 1.2116
9 6 2.0412 -0.7233 1.2490
10 1 1.7150 -0.1866 2.1399
11 7 1.5099 -2.0882 1.2778
12 6 1.3871 -2.7502 2.4702
13 1 1.6824 -2.2662 3.3894
14 6 0.8842 -4.0437 2.4973
15 7 0.7666 -4.6802 3.6433
16 14 0.3741 -4.8811 0.9073
17 1 1.5354 -5.6102 0.3373
18 1 -0.7255 -5.8402 1.1837
19 1 -0.0932 -3.8585 -0.0629
20 1 -0.3634 0.5125 0.8906
21 1 -0.3633 0.5150 -0.8893
22 1 -0.3633 -1.0277 -0.0005
23 1 1.6914 -0.2024 -2.1388
24 1 1.6663 -1.7464 -1.2542
25 1 3.7997 -2.3669 -2.5356
26 1 5.1207 -1.1740 -2.5146
27 1 3.5886 -0.7910 -3.3359
28 1 3.6390 -2.4912 -0.0832
29 1 5.1130 -1.4940 -0.1079
30 1 3.9395 -1.3217 2.0768
31 1 3.9672 0.2449 1.2306
32 1 1.2450 -2.5231 0.4521
33 1 0.4148 -5.5840 3.6624
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000229606207.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:41:01
Heat of formation + Delta-G solvation = -10.534226 kcal
Electronic energy + Delta-G solvation = -13598.948549 eV
Core-core repulsion = 11465.716444 eV
Total energy + Delta-G solvation = -2133.232105 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 198.143 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-40.44579 -36.52003 -34.51875 -33.07043 -31.66207 -27.83232 -27.22831 -25.17722
-23.44004 -22.52657 -19.97250 -19.71181 -16.77471 -16.54565 -16.17333 -15.96440
-15.36665 -15.20784 -14.69373 -14.47050 -13.56733 -13.40136 -13.29920 -13.11730
-13.00473 -12.76106 -12.33895 -12.27573 -12.00132 -11.91343 -11.63610 -11.51760
-10.99230 -10.89763 -9.36736 -9.18781 -8.02690 -5.32937 1.30009 1.32332
1.39922 2.44554 3.02486 3.28875 3.66701 3.84176 4.04905 4.12161
4.30990 4.45646 4.51555 4.60779 4.65525 4.69802 4.82082 4.85853
5.00206 5.05668 5.07768 5.19997 5.21962 5.32935 5.40998 5.51368
5.79967 6.12675 6.18927 6.22673 7.08559 7.86630 8.05159 9.19572
Molecular weight = 198.14amu
Principal moments of inertia in cm(-1)
A = 0.034856 B = 0.012938 C = 0.012446
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 803.115374 B = 2163.702717 C = 2249.266239
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.087 4.087
3 H 0.098 0.902
4 C 0.063 3.937
5 N -0.541 5.541
6 C 0.023 3.977
7 C 0.066 3.934
8 C -0.126 4.126
9 C 0.171 3.829
10 H 0.043 0.957
11 N -0.743 5.743
12 C -0.216 4.216
13 H 0.058 0.942
14 C -0.064 4.064
15 N -0.985 5.985
16 Si 0.944 3.056
17 H -0.284 1.284
18 H -0.294 1.294
19 H -0.257 1.257
20 H 0.054 0.946
21 H 0.074 0.926
22 H 0.033 0.967
23 H 0.094 0.906
24 H 0.009 0.991
25 H 0.013 0.987
26 H 0.079 0.921
27 H 0.084 0.916
28 H 0.010 0.990
29 H 0.079 0.921
30 H 0.044 0.956
31 H 0.080 0.920
32 H 0.361 0.639
33 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.974 9.824 -13.270 16.982
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.106 4.106
3 H 0.116 0.884
4 C -0.066 4.066
5 N -0.266 5.266
6 C -0.125 4.125
7 C -0.062 4.062
8 C -0.166 4.166
9 C 0.063 3.937
10 H 0.061 0.939
11 N -0.387 5.387
12 C -0.347 4.347
13 H 0.076 0.924
14 C -0.255 4.255
15 N -0.636 5.636
16 Si 0.772 3.228
17 H -0.211 1.211
18 H -0.221 1.221
19 H -0.182 1.182
20 H 0.073 0.927
21 H 0.093 0.907
22 H 0.052 0.948
23 H 0.113 0.887
24 H 0.027 0.973
25 H 0.032 0.968
26 H 0.098 0.902
27 H 0.102 0.898
28 H 0.028 0.972
29 H 0.097 0.903
30 H 0.063 0.937
31 H 0.098 0.902
32 H 0.195 0.805
33 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 4.144 10.285 -13.025 17.106
hybrid contribution -0.656 -2.054 -0.289 2.175
sum 3.489 8.232 -13.314 16.037
Atomic orbital electron populations
1.21678 0.94572 1.01076 1.02085 1.21378 0.95785 1.00121 0.93365
0.88401 1.22138 0.87370 0.98016 0.99033 1.62037 1.07945 1.53761
1.02808 1.22442 1.01516 0.96946 0.91602 1.21905 0.99390 0.94359
0.90519 1.22040 0.97843 1.00555 0.96156 1.20537 0.92036 0.84358
0.96744 0.93874 1.42817 1.77383 1.14094 1.04441 1.19049 1.32911
0.95895 0.86876 0.92378 1.25354 1.02926 0.97934 0.99246 1.69863
1.54428 1.13365 1.25986 0.85575 0.77701 0.78653 0.80862 1.21084
1.22108 1.18176 0.92736 0.90684 0.94788 0.88738 0.97300 0.96843
0.90216 0.89771 0.97213 0.90261 0.93744 0.90151 0.80534 0.93529
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.99 9.02 71.98 0.65 -3.34 16
2 C -0.09 -2.62 2.67 -10.74 -0.03 -2.64 16
3 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16
4 C 0.06 1.80 4.59 86.32 0.40 2.19 16
5 N -0.54 -15.20 4.91 -922.56 -4.53 -19.73 16
6 C 0.02 0.52 9.62 127.69 1.23 1.75 16
7 C 0.07 2.16 5.32 86.32 0.46 2.62 16
8 C -0.13 -4.39 5.77 30.65 0.18 -4.21 16
9 C 0.17 6.52 2.59 45.07 0.12 6.63 16
10 H 0.04 1.75 8.08 -2.39 -0.02 1.73 16
11 N -0.74 -34.73 3.48 -322.58 -1.12 -35.85 16
12 C -0.22 -12.36 10.41 84.03 0.88 -11.48 16
13 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16
14 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16
15 N -0.98 -63.98 13.97 21.65 0.30 -63.67 16
16 Si 0.94 46.70 27.74 68.60 1.90 48.60 16
17 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16
18 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16
19 H -0.26 -11.62 6.52 99.48 0.65 -10.97 16
20 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16
21 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16
22 H 0.03 1.17 7.30 -2.38 -0.02 1.15 16
23 H 0.09 2.21 8.04 -2.39 -0.02 2.19 16
24 H 0.01 0.30 6.64 -2.39 -0.02 0.28 16
25 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16
26 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16
27 H 0.08 1.56 8.02 -2.38 -0.02 1.54 16
28 H 0.01 0.37 7.69 -2.38 -0.02 0.36 16
29 H 0.08 2.29 8.12 -2.39 -0.02 2.27 16
30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16
31 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16
32 H 0.36 16.63 3.72 -92.70 -0.34 16.29 16
33 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16
Total: -1.00 -65.78 257.29 1.55 -64.24
By element:
Atomic # 1 Polarization: 17.58 SS G_CDS: 0.66 Total: 18.24 kcal
Atomic # 6 Polarization: -16.16 SS G_CDS: 4.34 Total: -11.82 kcal
Atomic # 7 Polarization: -113.91 SS G_CDS: -5.35 Total: -119.26 kcal
Atomic # 14 Polarization: 46.70 SS G_CDS: 1.90 Total: 48.60 kcal
Total: -65.78 1.55 -64.24 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000229606207.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.701 kcal
(2) G-P(sol) polarization free energy of solvation -65.784 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.083 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.235 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.534 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds