Wall clock time and date at job start Mon Mar 30 2020 02:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.49959 * 2 1 4 4 C 1.53037 * 109.53588 * 239.90329 * 2 1 3 5 5 N 1.46851 * 109.51851 * 180.85591 * 4 2 1 6 6 C 1.46901 * 110.99811 * 185.83502 * 5 4 2 7 7 C 1.46851 * 111.19715 * 61.74136 * 5 4 2 8 8 C 1.53036 * 109.52435 * 298.25660 * 7 5 4 9 9 C 1.53116 * 109.50281 * 120.07526 * 2 1 3 10 10 H 1.09002 * 109.52331 * 297.54129 * 9 2 1 11 11 N 1.46493 * 109.57646 * 57.70290 * 9 2 1 12 12 C 1.36937 * 120.00549 * 204.71485 * 11 9 2 13 13 H 1.08002 * 119.99555 * 359.97438 * 12 11 9 14 14 C 1.38808 * 120.00255 * 180.02562 * 12 11 9 15 15 N 1.31620 * 120.00146 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00107 * 359.97438 * 14 12 11 17 17 H 1.48493 * 109.46886 * 90.00060 * 16 14 12 18 18 H 1.48501 * 109.46713 * 210.00222 * 16 14 12 19 19 H 1.48504 * 109.46942 * 329.99918 * 16 14 12 20 20 H 1.08989 * 109.47717 * 299.92009 * 1 2 3 21 21 H 1.09001 * 109.47101 * 59.92814 * 1 2 3 22 22 H 1.09008 * 109.46996 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.46378 * 60.84562 * 4 2 1 24 24 H 1.08994 * 109.46214 * 300.86986 * 4 2 1 25 25 H 1.09002 * 109.47401 * 291.83856 * 6 5 4 26 26 H 1.09001 * 109.46874 * 171.83869 * 6 5 4 27 27 H 1.09004 * 109.46970 * 51.84002 * 6 5 4 28 28 H 1.09008 * 109.46277 * 58.27072 * 7 5 4 29 29 H 1.09004 * 109.46518 * 178.23714 * 7 5 4 30 30 H 1.09000 * 109.50296 * 179.11929 * 8 7 5 31 31 H 1.08997 * 109.50225 * 299.23606 * 8 7 5 32 32 H 0.97011 * 120.00054 * 24.71282 * 11 9 2 33 33 H 0.96999 * 120.00360 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0417 -0.7232 -1.2478 5 7 3.5101 -0.7409 -1.2371 6 6 4.0389 -1.3046 -2.4864 7 6 4.0238 -1.4714 -0.0713 8 6 3.5712 -0.7705 1.2116 9 6 2.0412 -0.7233 1.2490 10 1 1.7150 -0.1866 2.1399 11 7 1.5099 -2.0882 1.2778 12 6 1.3871 -2.7502 2.4702 13 1 1.6824 -2.2662 3.3894 14 6 0.8842 -4.0437 2.4973 15 7 0.7666 -4.6802 3.6433 16 14 0.3741 -4.8811 0.9073 17 1 1.5354 -5.6102 0.3373 18 1 -0.7255 -5.8402 1.1837 19 1 -0.0932 -3.8585 -0.0629 20 1 -0.3634 0.5125 0.8906 21 1 -0.3633 0.5150 -0.8893 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6914 -0.2024 -2.1388 24 1 1.6663 -1.7464 -1.2542 25 1 3.7997 -2.3669 -2.5356 26 1 5.1207 -1.1740 -2.5146 27 1 3.5886 -0.7910 -3.3359 28 1 3.6390 -2.4912 -0.0832 29 1 5.1130 -1.4940 -0.1079 30 1 3.9395 -1.3217 2.0768 31 1 3.9672 0.2449 1.2306 32 1 1.2450 -2.5231 0.4521 33 1 0.4148 -5.5840 3.6624 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229606207.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:01 Heat of formation + Delta-G solvation = -10.534226 kcal Electronic energy + Delta-G solvation = -13598.948549 eV Core-core repulsion = 11465.716444 eV Total energy + Delta-G solvation = -2133.232105 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.44579 -36.52003 -34.51875 -33.07043 -31.66207 -27.83232 -27.22831 -25.17722 -23.44004 -22.52657 -19.97250 -19.71181 -16.77471 -16.54565 -16.17333 -15.96440 -15.36665 -15.20784 -14.69373 -14.47050 -13.56733 -13.40136 -13.29920 -13.11730 -13.00473 -12.76106 -12.33895 -12.27573 -12.00132 -11.91343 -11.63610 -11.51760 -10.99230 -10.89763 -9.36736 -9.18781 -8.02690 -5.32937 1.30009 1.32332 1.39922 2.44554 3.02486 3.28875 3.66701 3.84176 4.04905 4.12161 4.30990 4.45646 4.51555 4.60779 4.65525 4.69802 4.82082 4.85853 5.00206 5.05668 5.07768 5.19997 5.21962 5.32935 5.40998 5.51368 5.79967 6.12675 6.18927 6.22673 7.08559 7.86630 8.05159 9.19572 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034856 B = 0.012938 C = 0.012446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.115374 B = 2163.702717 C = 2249.266239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.098 0.902 4 C 0.063 3.937 5 N -0.541 5.541 6 C 0.023 3.977 7 C 0.066 3.934 8 C -0.126 4.126 9 C 0.171 3.829 10 H 0.043 0.957 11 N -0.743 5.743 12 C -0.216 4.216 13 H 0.058 0.942 14 C -0.064 4.064 15 N -0.985 5.985 16 Si 0.944 3.056 17 H -0.284 1.284 18 H -0.294 1.294 19 H -0.257 1.257 20 H 0.054 0.946 21 H 0.074 0.926 22 H 0.033 0.967 23 H 0.094 0.906 24 H 0.009 0.991 25 H 0.013 0.987 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.010 0.990 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.361 0.639 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.974 9.824 -13.270 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 H 0.116 0.884 4 C -0.066 4.066 5 N -0.266 5.266 6 C -0.125 4.125 7 C -0.062 4.062 8 C -0.166 4.166 9 C 0.063 3.937 10 H 0.061 0.939 11 N -0.387 5.387 12 C -0.347 4.347 13 H 0.076 0.924 14 C -0.255 4.255 15 N -0.636 5.636 16 Si 0.772 3.228 17 H -0.211 1.211 18 H -0.221 1.221 19 H -0.182 1.182 20 H 0.073 0.927 21 H 0.093 0.907 22 H 0.052 0.948 23 H 0.113 0.887 24 H 0.027 0.973 25 H 0.032 0.968 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.028 0.972 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.195 0.805 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.144 10.285 -13.025 17.106 hybrid contribution -0.656 -2.054 -0.289 2.175 sum 3.489 8.232 -13.314 16.037 Atomic orbital electron populations 1.21678 0.94572 1.01076 1.02085 1.21378 0.95785 1.00121 0.93365 0.88401 1.22138 0.87370 0.98016 0.99033 1.62037 1.07945 1.53761 1.02808 1.22442 1.01516 0.96946 0.91602 1.21905 0.99390 0.94359 0.90519 1.22040 0.97843 1.00555 0.96156 1.20537 0.92036 0.84358 0.96744 0.93874 1.42817 1.77383 1.14094 1.04441 1.19049 1.32911 0.95895 0.86876 0.92378 1.25354 1.02926 0.97934 0.99246 1.69863 1.54428 1.13365 1.25986 0.85575 0.77701 0.78653 0.80862 1.21084 1.22108 1.18176 0.92736 0.90684 0.94788 0.88738 0.97300 0.96843 0.90216 0.89771 0.97213 0.90261 0.93744 0.90151 0.80534 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.02 71.98 0.65 -3.34 16 2 C -0.09 -2.62 2.67 -10.74 -0.03 -2.64 16 3 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 4 C 0.06 1.80 4.59 86.32 0.40 2.19 16 5 N -0.54 -15.20 4.91 -922.56 -4.53 -19.73 16 6 C 0.02 0.52 9.62 127.69 1.23 1.75 16 7 C 0.07 2.16 5.32 86.32 0.46 2.62 16 8 C -0.13 -4.39 5.77 30.65 0.18 -4.21 16 9 C 0.17 6.52 2.59 45.07 0.12 6.63 16 10 H 0.04 1.75 8.08 -2.39 -0.02 1.73 16 11 N -0.74 -34.73 3.48 -322.58 -1.12 -35.85 16 12 C -0.22 -12.36 10.41 84.03 0.88 -11.48 16 13 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 14 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 15 N -0.98 -63.98 13.97 21.65 0.30 -63.67 16 16 Si 0.94 46.70 27.74 68.60 1.90 48.60 16 17 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 18 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 19 H -0.26 -11.62 6.52 99.48 0.65 -10.97 16 20 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 21 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.03 1.17 7.30 -2.38 -0.02 1.15 16 23 H 0.09 2.21 8.04 -2.39 -0.02 2.19 16 24 H 0.01 0.30 6.64 -2.39 -0.02 0.28 16 25 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.08 1.56 8.02 -2.38 -0.02 1.54 16 28 H 0.01 0.37 7.69 -2.38 -0.02 0.36 16 29 H 0.08 2.29 8.12 -2.39 -0.02 2.27 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.36 16.63 3.72 -92.70 -0.34 16.29 16 33 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -65.78 257.29 1.55 -64.24 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.66 Total: 18.24 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 4.34 Total: -11.82 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -5.35 Total: -119.26 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.90 Total: 48.60 kcal Total: -65.78 1.55 -64.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229606207.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.701 kcal (2) G-P(sol) polarization free energy of solvation -65.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds