Wall clock time and date at job start Mon Mar 30 2020 02:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47039 * 2 1 4 4 C 1.50695 * 109.47366 * 120.00411 * 2 1 3 5 5 H 1.08004 * 120.00424 * 119.99867 * 4 2 1 6 6 C 1.37882 * 119.99911 * 299.99906 * 4 2 1 7 7 N 1.31514 * 119.99615 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99926 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47045 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46642 * 120.00212 * 8 6 4 11 11 H 1.48503 * 109.46926 * 239.99945 * 8 6 4 12 12 N 1.46904 * 109.46822 * 240.00346 * 2 1 3 13 13 C 1.46896 * 110.99850 * 107.14945 * 12 2 1 14 14 C 1.52997 * 110.27544 * 297.08711 * 13 12 2 15 15 C 1.54594 * 110.39525 * 59.23825 * 13 12 2 16 16 C 1.54931 * 102.92464 * 140.91462 * 15 13 12 17 17 N 1.48808 * 103.35077 * 322.68834 * 16 15 13 18 18 C 1.47903 * 105.67484 * 38.97750 * 17 16 15 19 19 H 1.08997 * 109.46962 * 302.26659 * 1 2 3 20 20 H 1.08993 * 109.47581 * 62.27115 * 1 2 3 21 21 H 1.09001 * 109.47094 * 182.27254 * 1 2 3 22 22 H 0.97007 * 119.99485 * 180.02562 * 7 6 4 23 23 H 1.00903 * 110.99473 * 231.10241 * 12 2 1 24 24 H 1.08991 * 109.47482 * 304.60302 * 14 13 12 25 25 H 1.09006 * 109.46705 * 64.60865 * 14 13 12 26 26 H 1.08998 * 109.47516 * 184.59931 * 14 13 12 27 27 H 1.09005 * 110.72374 * 259.27130 * 15 13 12 28 28 H 1.09002 * 110.72754 * 22.55484 * 15 13 12 29 29 H 1.08998 * 110.67163 * 81.02196 * 16 15 13 30 30 H 1.09002 * 110.67233 * 203.98565 * 16 15 13 31 31 H 1.00900 * 110.96152 * 278.57112 * 17 16 15 32 32 H 1.09007 * 109.91581 * 215.45323 * 18 17 16 33 33 H 1.09000 * 109.92087 * 94.35512 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1206 4.0079 9 1 3.1465 -2.2872 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1661 -1.5869 4.8160 12 7 2.0196 -0.6925 -1.1995 13 6 2.5763 0.2617 -2.1678 14 6 1.4878 1.2218 -2.6518 15 6 3.7454 1.0509 -1.5352 16 6 4.7636 1.1538 -2.6985 17 7 4.6391 -0.1625 -3.3814 18 6 3.1966 -0.4883 -3.3612 19 1 -0.3633 0.5486 0.8689 20 1 -0.3634 0.4781 -0.9096 21 1 -0.3633 -1.0269 0.0408 22 1 0.7096 1.1617 3.4845 23 1 2.6978 -1.3993 -0.9574 24 1 0.6525 0.6502 -3.0560 25 1 1.1415 1.8296 -1.8158 26 1 1.8941 1.8700 -3.4283 27 1 3.4169 2.0418 -1.2215 28 1 4.1725 0.5014 -0.6963 29 1 4.4928 1.9631 -3.3764 30 1 5.7735 1.2972 -2.3143 31 1 5.1764 -0.8698 -2.9028 32 1 3.0603 -1.5626 -3.2360 33 1 2.7287 -0.1605 -4.2895 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230737134.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:31 Heat of formation + Delta-G solvation = -23.361506 kcal Electronic energy + Delta-G solvation = -13447.271164 eV Core-core repulsion = 11313.482826 eV Total energy + Delta-G solvation = -2133.788338 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.42735 -36.77887 -34.32208 -31.65523 -30.12865 -29.32698 -27.13122 -26.00515 -22.88110 -22.04138 -19.89873 -18.66096 -17.53421 -16.77934 -16.05297 -15.56771 -15.24261 -14.76971 -14.24486 -13.91970 -13.42347 -13.28602 -13.20864 -12.92311 -12.83628 -12.53539 -12.36740 -12.25353 -12.17668 -11.86522 -11.61453 -11.44223 -10.87637 -10.55990 -9.58135 -9.00298 -8.13840 -6.28926 1.36686 1.39266 1.49706 2.38275 3.12970 3.32755 3.53608 3.89632 4.04283 4.23539 4.32843 4.50764 4.64647 4.79883 4.84434 4.95477 4.96008 5.02173 5.13429 5.14895 5.24367 5.33089 5.41988 5.52124 5.68574 5.76315 5.98057 6.18602 6.41046 6.45218 6.81514 7.04656 7.41600 8.90085 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.044670 B = 0.010577 C = 0.009591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.663788 B = 2646.590855 C = 2918.802284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.220 3.780 3 H -0.008 1.008 4 C -0.544 4.544 5 H 0.055 0.945 6 C 0.015 3.985 7 N -0.915 5.915 8 Si 0.956 3.044 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.281 1.281 12 N -0.676 5.676 13 C 0.082 3.918 14 C -0.122 4.122 15 C -0.175 4.175 16 C 0.052 3.948 17 N -0.671 5.671 18 C 0.057 3.943 19 H 0.050 0.950 20 H 0.025 0.975 21 H 0.020 0.980 22 H 0.261 0.739 23 H 0.328 0.672 24 H 0.059 0.941 25 H 0.032 0.968 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.340 0.660 32 H 0.072 0.928 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.290 -0.309 -8.726 10.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.112 3.888 3 H 0.010 0.990 4 C -0.582 4.582 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.782 3.218 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.307 5.307 13 C -0.011 4.011 14 C -0.180 4.180 15 C -0.217 4.217 16 C -0.078 4.078 17 N -0.297 5.297 18 C -0.073 4.073 19 H 0.069 0.931 20 H 0.044 0.956 21 H 0.039 0.961 22 H 0.071 0.929 23 H 0.146 0.854 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.155 0.845 32 H 0.091 0.909 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.627 0.008 -9.619 10.674 hybrid contribution 0.597 -0.196 2.712 2.784 sum 5.224 -0.187 -6.907 8.662 Atomic orbital electron populations 1.21605 0.98403 0.98489 0.98645 1.18838 0.92062 0.92009 0.85905 0.98999 1.21868 1.31498 1.12559 0.92316 0.92730 1.25689 0.95178 0.95648 1.01891 1.70038 1.37441 1.23986 1.23951 0.85541 0.78122 0.78669 0.79493 1.19138 1.20750 1.20694 1.60869 1.40680 1.14504 1.14601 1.22329 0.93122 0.92392 0.93272 1.21753 0.98102 0.98039 1.00066 1.23700 0.98363 1.00717 0.98875 1.23085 0.98590 0.93045 0.93069 1.62992 1.07575 1.04827 1.54337 1.22769 0.88034 0.99827 0.96661 0.93122 0.95563 0.96073 0.92950 0.85393 0.92223 0.94884 0.90938 0.92740 0.93387 0.89607 0.89817 0.84520 0.90904 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.70 9.10 71.98 0.66 -5.04 16 2 C 0.22 11.03 1.65 44.17 0.07 11.10 16 3 H -0.01 -0.42 5.83 -2.39 -0.01 -0.44 16 4 C -0.54 -29.57 8.60 25.60 0.22 -29.35 16 5 H 0.05 2.91 7.36 -2.91 -0.02 2.89 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.91 -52.73 11.34 21.45 0.24 -52.49 16 8 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 N -0.68 -28.02 5.93 -447.81 -2.66 -30.68 16 13 C 0.08 2.82 0.84 4.41 0.00 2.82 16 14 C -0.12 -4.07 7.20 71.98 0.52 -3.55 16 15 C -0.18 -6.02 4.89 31.80 0.16 -5.87 16 16 C 0.05 1.36 7.55 86.59 0.65 2.02 16 17 N -0.67 -17.33 7.54 -501.52 -3.78 -21.11 16 18 C 0.06 1.62 6.89 86.45 0.60 2.21 16 19 H 0.05 2.80 6.13 -2.39 -0.01 2.79 16 20 H 0.03 1.18 6.85 -2.39 -0.02 1.17 16 21 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.26 14.31 8.31 -92.70 -0.77 13.54 16 23 H 0.33 13.58 7.73 -89.69 -0.69 12.89 16 24 H 0.06 1.96 8.13 -2.39 -0.02 1.94 16 25 H 0.03 1.26 6.61 -2.38 -0.02 1.24 16 26 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.05 2.01 7.65 -2.38 -0.02 1.99 16 28 H 0.05 1.87 7.97 -2.39 -0.02 1.85 16 29 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.34 8.17 8.92 -89.69 -0.80 7.37 16 32 H 0.07 2.04 7.86 -2.38 -0.02 2.02 16 33 H 0.09 2.28 7.68 -2.39 -0.02 2.26 16 Total: -1.00 -58.21 257.30 -1.24 -59.45 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.40 Total: 23.72 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 3.32 Total: -24.36 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -6.19 Total: -104.28 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -58.21 -1.24 -59.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230737134.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.084 kcal (2) G-P(sol) polarization free energy of solvation -58.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds