Wall clock time and date at job start Mon Mar 30 2020 01:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46903 * 110.27370 * 2 1 4 4 C 1.46898 * 110.99865 * 299.36402 * 3 2 1 5 5 C 1.53006 * 109.47006 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47184 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99819 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00046 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00192 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99979 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47297 * 180.02562 * 10 8 6 12 12 H 1.48503 * 109.47261 * 60.00310 * 10 8 6 13 13 H 1.48500 * 109.47454 * 300.00304 * 10 8 6 14 14 C 1.54593 * 110.39068 * 122.14474 * 2 1 3 15 15 C 1.54931 * 102.92055 * 97.00285 * 14 2 1 16 16 N 1.48530 * 103.23066 * 37.41466 * 15 14 2 17 17 C 1.47910 * 105.81617 * 320.79258 * 16 15 14 18 18 H 1.09001 * 109.47097 * 59.29635 * 1 2 3 19 19 H 1.08996 * 109.47120 * 179.29844 * 1 2 3 20 20 H 1.09000 * 109.47268 * 299.30400 * 1 2 3 21 21 H 1.00897 * 110.99716 * 63.31525 * 3 2 1 22 22 H 1.09001 * 109.47062 * 60.00109 * 4 3 2 23 23 H 1.09001 * 109.47392 * 299.99557 * 4 3 2 24 24 H 1.09001 * 109.47002 * 60.00218 * 5 4 3 25 25 H 1.08993 * 109.46955 * 299.99780 * 5 4 3 26 26 H 0.97001 * 119.99934 * 359.97438 * 9 8 6 27 27 H 1.08999 * 110.72489 * 215.36148 * 14 2 1 28 28 H 1.09000 * 110.72472 * 338.64381 * 14 2 1 29 29 H 1.09004 * 110.67034 * 278.97386 * 15 14 2 30 30 H 1.09002 * 110.81294 * 155.91714 * 15 14 2 31 31 H 1.00897 * 111.00478 * 81.30427 * 16 15 14 32 32 H 1.09004 * 109.91368 * 265.97454 * 17 16 15 33 33 H 1.08997 * 109.91177 * 144.68351 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0391 1.3780 0.0000 4 6 1.5907 2.1048 -1.1952 5 6 2.1389 3.5329 -1.1593 6 6 1.6794 4.2783 -2.3858 7 1 1.0581 3.7832 -3.1175 8 6 2.0513 5.5927 -2.5733 9 7 2.8074 6.1957 -1.6821 10 14 1.4811 6.5169 -4.0932 11 1 2.0133 7.9029 -4.0584 12 1 -0.0031 6.5567 -4.1206 13 1 1.9803 5.8259 -5.3091 14 6 2.0687 -0.7710 1.2269 15 6 2.3620 -2.1787 0.6501 16 7 2.8829 -1.8870 -0.7099 17 6 2.0645 -0.7672 -1.2235 18 1 -0.3633 0.5247 -0.8836 19 1 -0.3633 -1.0275 -0.0126 20 1 -0.3634 0.5030 0.8962 21 1 1.7675 1.8637 0.8416 22 1 0.5012 2.1347 -1.2149 23 1 1.9565 1.5972 -2.0878 24 1 3.2283 3.5034 -1.1394 25 1 1.7727 4.0402 -0.2669 26 1 3.1032 5.7159 -0.8927 27 1 2.9824 -0.3097 1.6017 28 1 1.3131 -0.8250 2.0107 29 1 1.4476 -2.7694 0.5933 30 1 3.1142 -2.6932 1.2480 31 1 3.8595 -1.6356 -0.6768 32 1 1.2324 -1.1546 -1.8115 33 1 2.6799 -0.1078 -1.8355 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230742014.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:07 Heat of formation + Delta-G solvation = -36.107819 kcal Electronic energy + Delta-G solvation = -12910.520242 eV Core-core repulsion = 10776.179183 eV Total energy + Delta-G solvation = -2134.341059 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.49947 -36.85548 -35.13701 -32.24437 -30.13613 -29.39350 -26.68847 -25.65200 -23.49124 -22.11501 -20.23111 -18.94172 -17.82060 -16.34300 -15.78963 -15.75821 -15.68372 -15.34945 -14.87742 -14.32242 -13.84091 -13.71017 -13.50148 -13.08889 -12.68500 -12.43330 -12.29735 -12.08204 -12.00632 -11.94226 -11.62118 -11.59381 -10.74126 -10.57320 -9.68447 -9.35241 -8.72423 -6.42989 1.51431 1.60170 1.79687 2.54774 3.11070 3.13486 3.34735 3.58030 3.95353 4.06853 4.27445 4.35222 4.35768 4.49237 4.54339 4.63441 4.77956 4.85930 4.90408 4.94050 5.05159 5.10512 5.14561 5.29087 5.40277 5.73982 5.88851 6.12482 6.16290 6.36823 6.40836 6.56576 7.39815 8.68782 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.067075 B = 0.006871 C = 0.006789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.340670 B = 4074.404084 C = 4123.162277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.075 3.925 3 N -0.683 5.683 4 C 0.089 3.911 5 C 0.017 3.983 6 C -0.622 4.622 7 H 0.051 0.949 8 C -0.039 4.039 9 N -0.936 5.936 10 Si 1.119 2.881 11 H -0.282 1.282 12 H -0.268 1.268 13 H -0.268 1.268 14 C -0.140 4.140 15 C 0.048 3.952 16 N -0.677 5.677 17 C 0.054 3.946 18 H 0.045 0.955 19 H 0.077 0.923 20 H 0.057 0.943 21 H 0.337 0.663 22 H 0.022 0.978 23 H 0.057 0.943 24 H -0.011 1.011 25 H -0.013 1.013 26 H 0.255 0.745 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.341 0.659 32 H 0.075 0.925 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.466 -14.951 4.335 15.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.313 5.313 4 C -0.040 4.040 5 C -0.021 4.021 6 C -0.660 4.660 7 H 0.069 0.931 8 C -0.236 4.236 9 N -0.573 5.573 10 Si 0.940 3.060 11 H -0.208 1.208 12 H -0.193 1.193 13 H -0.193 1.193 14 C -0.180 4.180 15 C -0.082 4.082 16 N -0.304 5.304 17 C -0.077 4.077 18 H 0.064 0.936 19 H 0.096 0.904 20 H 0.076 0.924 21 H 0.155 0.845 22 H 0.040 0.960 23 H 0.076 0.924 24 H 0.007 0.993 25 H 0.005 0.995 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.156 0.844 32 H 0.093 0.907 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.106 -14.254 2.925 14.879 hybrid contribution -0.530 -0.166 1.680 1.769 sum -3.636 -14.420 4.605 15.568 Atomic orbital electron populations 1.22420 0.95840 1.02867 1.01594 1.22394 0.93354 0.88960 0.97009 1.60815 1.63150 1.02565 1.04794 1.21666 0.96201 0.93486 0.92602 1.19087 0.94709 0.92886 0.95386 1.22435 1.35291 0.99977 1.08275 0.93091 1.27495 0.94092 0.96928 1.05076 1.70913 1.34733 1.40219 1.11476 0.82920 0.76695 0.74911 0.71510 1.20755 1.19275 1.19349 1.23146 1.01824 0.96447 0.96540 1.23137 1.01532 0.95263 0.88218 1.62768 1.07339 1.37699 1.22560 1.22777 0.97801 0.91053 0.96041 0.93581 0.90413 0.92432 0.84542 0.95985 0.92411 0.99265 0.99522 0.93581 0.91199 0.89607 0.89598 0.88838 0.84379 0.90663 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.28 8.00 71.98 0.58 -3.70 16 2 C 0.08 2.07 0.86 4.40 0.00 2.08 16 3 N -0.68 -23.93 6.04 -465.83 -2.81 -26.74 16 4 C 0.09 3.81 4.94 86.31 0.43 4.23 16 5 C 0.02 0.90 4.54 29.85 0.14 1.04 16 6 C -0.62 -36.41 9.11 25.60 0.23 -36.18 16 7 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 8 C -0.04 -2.28 5.46 84.65 0.46 -1.82 16 9 N -0.94 -59.38 13.65 21.45 0.29 -59.09 16 10 Si 1.12 50.86 29.90 68.60 2.05 52.91 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 13 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 14 C -0.14 -3.07 6.31 31.80 0.20 -2.87 16 15 C 0.05 0.92 7.55 86.65 0.65 1.57 16 16 N -0.68 -16.25 7.51 -502.20 -3.77 -20.02 16 17 C 0.05 1.52 6.39 86.44 0.55 2.07 16 18 H 0.05 1.33 6.46 -2.39 -0.02 1.31 16 19 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 20 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 21 H 0.34 11.59 8.78 -89.70 -0.79 10.80 16 22 H 0.02 0.94 6.37 -2.39 -0.02 0.92 16 23 H 0.06 2.51 6.40 -2.39 -0.02 2.49 16 24 H -0.01 -0.64 8.01 -2.39 -0.02 -0.66 16 25 H -0.01 -0.76 8.01 -2.39 -0.02 -0.78 16 26 H 0.25 16.42 7.22 -92.71 -0.67 15.75 16 27 H 0.07 1.66 8.06 -2.39 -0.02 1.64 16 28 H 0.09 1.61 7.86 -2.39 -0.02 1.59 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.34 7.94 8.92 -89.70 -0.80 7.14 16 32 H 0.08 2.08 7.68 -2.38 -0.02 2.06 16 33 H 0.06 1.84 6.42 -2.39 -0.02 1.82 16 Total: -1.00 -65.41 262.07 -1.39 -66.79 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -0.39 Total: 19.72 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 3.24 Total: -33.58 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -6.29 Total: -105.85 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 2.05 Total: 52.91 kcal Total: -65.41 -1.39 -66.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230742014.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.686 kcal (2) G-P(sol) polarization free energy of solvation -65.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds