Wall clock time and date at job start Mon Mar 30 2020 02:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47192 * 2 1 4 4 C 1.50696 * 109.47344 * 239.99892 * 2 1 3 5 5 H 1.08010 * 119.99972 * 240.00251 * 4 2 1 6 6 C 1.37876 * 120.00571 * 60.00012 * 4 2 1 7 7 N 1.31514 * 119.99452 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00525 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47181 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47485 * 119.99810 * 8 6 4 11 11 H 1.48504 * 109.47020 * 240.00043 * 8 6 4 12 12 N 1.46904 * 109.47049 * 119.99817 * 2 1 3 13 13 C 1.48556 * 111.00162 * 64.45514 * 12 2 1 14 14 C 1.54385 * 104.59520 * 159.03833 * 13 12 2 15 15 H 1.09002 * 110.31700 * 95.14474 * 14 13 12 16 16 C 1.52998 * 110.32643 * 217.25133 * 14 13 12 17 17 C 1.54264 * 105.05937 * 336.15067 * 14 13 12 18 18 H 1.08995 * 110.31937 * 118.89695 * 17 14 13 19 19 N 1.46900 * 110.32089 * 241.09859 * 17 14 13 20 20 C 1.48566 * 110.99843 * 179.87759 * 12 2 1 21 21 H 1.09003 * 109.47076 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47343 * 299.99993 * 1 2 3 23 23 H 1.08998 * 109.46751 * 60.00679 * 1 2 3 24 24 H 0.96996 * 119.99822 * 180.02562 * 7 6 4 25 25 H 1.08997 * 110.41166 * 277.81957 * 13 12 2 26 26 H 1.09000 * 110.40826 * 40.26311 * 13 12 2 27 27 H 1.09004 * 109.46615 * 58.54478 * 16 14 13 28 28 H 1.08996 * 109.47084 * 178.54354 * 16 14 13 29 29 H 1.09003 * 109.47116 * 298.54976 * 16 14 13 30 30 H 1.00896 * 110.99933 * 177.08858 * 19 17 14 31 31 H 1.00892 * 111.00272 * 301.04709 * 19 17 14 32 32 H 1.08999 * 110.41049 * 319.73313 * 20 12 2 33 33 H 1.08999 * 110.41330 * 82.18261 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 3.1466 -2.2871 -3.6036 10 1 1.1663 -1.5869 -4.8160 11 1 3.1468 -0.1875 -4.8164 12 7 2.0196 -0.6925 1.1995 13 6 1.6333 -2.1268 1.1812 14 6 2.6242 -2.8090 2.1488 15 1 2.1848 -2.8939 3.1428 16 6 3.0154 -4.1910 1.6218 17 6 3.8553 -1.8801 2.1824 18 1 4.0210 -1.5076 3.1933 19 7 5.0454 -2.5926 1.6987 20 6 3.5048 -0.7149 1.2323 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 0.7083 1.1606 -3.4844 25 1 0.6100 -2.2494 1.5361 26 1 1.7399 -2.5364 0.1768 27 1 3.4636 -4.0893 0.6334 28 1 3.7341 -4.6489 2.3013 29 1 2.1271 -4.8192 1.5550 30 1 5.8471 -1.9806 1.6716 31 1 5.2322 -3.4085 2.2619 32 1 3.9042 -0.9036 0.2359 33 1 3.8906 0.2256 1.6258 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235263975.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:53 Heat of formation + Delta-G solvation = 4.361798 kcal Electronic energy + Delta-G solvation = -13543.650051 eV Core-core repulsion = 11411.063886 eV Total energy + Delta-G solvation = -2132.586165 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.72126 -34.81690 -32.28450 -31.06399 -29.17778 -25.92382 -25.32787 -24.75909 -21.40419 -19.34402 -18.71084 -16.48245 -15.52975 -15.12932 -15.08648 -14.10860 -13.45940 -13.09233 -12.74075 -12.19201 -12.04450 -11.60779 -11.37658 -11.07033 -10.94367 -10.60286 -10.43078 -10.23277 -10.13038 -9.96386 -9.84060 -9.66400 -9.13591 -8.35752 -8.30164 -7.17956 -5.94997 -4.06163 3.29602 3.38043 3.43323 4.44638 4.76632 5.18744 5.29774 5.31929 5.45794 5.61144 5.88982 6.04923 6.09771 6.24548 6.44656 6.61072 6.65992 6.77096 6.86160 6.96674 7.03807 7.09562 7.21277 7.48930 7.62031 7.71642 7.76094 8.01070 8.19480 8.27041 8.47116 9.04134 9.60566 11.05941 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035988 B = 0.012589 C = 0.011015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.854754 B = 2223.555467 C = 2541.356165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.195 3.805 3 H 0.037 0.963 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.887 3.113 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 N -0.514 5.514 13 C 0.044 3.956 14 C -0.094 4.094 15 H 0.063 0.937 16 C -0.129 4.129 17 C 0.087 3.913 18 H 0.032 0.968 19 N -0.839 5.839 20 C 0.042 3.958 21 H 0.025 0.975 22 H 0.013 0.987 23 H 0.083 0.917 24 H 0.259 0.741 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.335 0.665 31 H 0.334 0.666 32 H 0.071 0.929 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.476 -6.028 7.484 10.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.088 3.912 3 H 0.055 0.945 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.527 5.527 8 Si 0.715 3.285 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 N -0.238 5.238 13 C -0.084 4.084 14 C -0.114 4.114 15 H 0.081 0.919 16 C -0.187 4.187 17 C -0.024 4.024 18 H 0.050 0.950 19 N -0.369 5.369 20 C -0.087 4.087 21 H 0.044 0.956 22 H 0.032 0.968 23 H 0.102 0.898 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.089 0.911 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.732 -5.696 7.127 9.857 hybrid contribution 1.021 -0.563 -0.695 1.358 sum 4.753 -6.259 6.431 10.155 Atomic orbital electron populations 1.21738 0.97687 0.99059 1.00158 1.19380 0.92494 0.94420 0.84937 0.94480 1.21765 1.31506 1.12894 0.91505 0.91906 1.24917 0.94899 0.94855 0.98903 1.69900 1.36642 1.22907 1.23240 0.86615 0.78672 0.79875 0.83355 1.19732 1.21092 1.21095 1.65749 1.06525 1.10921 1.40574 1.23015 0.96897 0.89975 0.98539 1.21969 0.95378 0.94910 0.99104 0.91901 1.21606 0.99762 0.95294 1.02031 1.22117 0.90216 0.94324 0.95779 0.95026 1.58898 1.06717 1.11312 1.59991 1.22972 0.91279 0.95261 0.99195 0.95619 0.96800 0.89820 0.93054 0.92167 0.91718 0.91190 0.93916 0.93752 0.85297 0.85282 0.91063 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.93 37.16 0.33 -2.88 16 2 C 0.19 5.01 2.45 -68.87 -0.17 4.84 16 3 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.54 -14.66 6.50 -34.44 -0.22 -14.88 16 5 H 0.06 1.74 5.68 -52.48 -0.30 1.44 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 7 N -0.89 -25.47 11.32 55.43 0.63 -24.84 16 8 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 N -0.51 -11.47 5.40 -223.40 -1.21 -12.68 16 13 C 0.04 0.90 4.84 -2.18 -0.01 0.89 16 14 C -0.09 -1.58 3.65 -89.23 -0.33 -1.90 16 15 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 16 C -0.13 -1.92 8.03 37.16 0.30 -1.63 16 17 C 0.09 1.44 4.17 -66.33 -0.28 1.16 16 18 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 19 N -0.84 -11.92 7.95 -3.49 -0.03 -11.94 16 20 C 0.04 0.85 6.00 -2.18 -0.01 0.84 16 21 H 0.02 0.61 7.06 -51.93 -0.37 0.24 16 22 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 23 H 0.08 2.27 6.07 -51.93 -0.32 1.96 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.06 1.21 7.70 -51.93 -0.40 0.81 16 26 H 0.06 1.48 5.62 -51.93 -0.29 1.19 16 27 H 0.07 1.18 7.71 -51.93 -0.40 0.78 16 28 H 0.04 0.54 7.08 -51.93 -0.37 0.17 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.33 4.26 9.06 -39.29 -0.36 3.90 16 31 H 0.33 3.99 7.50 -39.30 -0.29 3.70 16 32 H 0.07 1.63 6.14 -51.93 -0.32 1.31 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 252.18 15.07 3.80 3.80 Total: -1.00 -28.44 252.18 -7.39 -35.84 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.08 Total: 5.12 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -0.48 Total: -11.81 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.61 Total: -49.46 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.44 -7.39 -35.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235263975.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.197 kcal (2) G-P(sol) polarization free energy of solvation -28.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds