Wall clock time and date at job start Mon Mar 30 2020 02:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47192 * 2 1 4 4 C 1.50696 * 109.47344 * 239.99892 * 2 1 3 5 5 H 1.08010 * 119.99972 * 240.00251 * 4 2 1 6 6 C 1.37876 * 120.00571 * 60.00012 * 4 2 1 7 7 N 1.31514 * 119.99452 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00525 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47181 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47485 * 119.99810 * 8 6 4 11 11 H 1.48504 * 109.47020 * 240.00043 * 8 6 4 12 12 N 1.46904 * 109.47049 * 119.99817 * 2 1 3 13 13 C 1.48556 * 111.00162 * 64.45514 * 12 2 1 14 14 C 1.54385 * 104.59520 * 159.03833 * 13 12 2 15 15 H 1.09002 * 110.31700 * 95.14474 * 14 13 12 16 16 C 1.52998 * 110.32643 * 217.25133 * 14 13 12 17 17 C 1.54264 * 105.05937 * 336.15067 * 14 13 12 18 18 H 1.08995 * 110.31937 * 118.89695 * 17 14 13 19 19 N 1.46900 * 110.32089 * 241.09859 * 17 14 13 20 20 C 1.48566 * 110.99843 * 179.87759 * 12 2 1 21 21 H 1.09003 * 109.47076 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47343 * 299.99993 * 1 2 3 23 23 H 1.08998 * 109.46751 * 60.00679 * 1 2 3 24 24 H 0.96996 * 119.99822 * 180.02562 * 7 6 4 25 25 H 1.08997 * 110.41166 * 277.81957 * 13 12 2 26 26 H 1.09000 * 110.40826 * 40.26311 * 13 12 2 27 27 H 1.09004 * 109.46615 * 58.54478 * 16 14 13 28 28 H 1.08996 * 109.47084 * 178.54354 * 16 14 13 29 29 H 1.09003 * 109.47116 * 298.54976 * 16 14 13 30 30 H 1.00896 * 110.99933 * 177.08858 * 19 17 14 31 31 H 1.00892 * 111.00272 * 301.04709 * 19 17 14 32 32 H 1.08999 * 110.41049 * 319.73313 * 20 12 2 33 33 H 1.08999 * 110.41330 * 82.18261 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 3.1466 -2.2871 -3.6036 10 1 1.1663 -1.5869 -4.8160 11 1 3.1468 -0.1875 -4.8164 12 7 2.0196 -0.6925 1.1995 13 6 1.6333 -2.1268 1.1812 14 6 2.6242 -2.8090 2.1488 15 1 2.1848 -2.8939 3.1428 16 6 3.0154 -4.1910 1.6218 17 6 3.8553 -1.8801 2.1824 18 1 4.0210 -1.5076 3.1933 19 7 5.0454 -2.5926 1.6987 20 6 3.5048 -0.7149 1.2323 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 0.7083 1.1606 -3.4844 25 1 0.6100 -2.2494 1.5361 26 1 1.7399 -2.5364 0.1768 27 1 3.4636 -4.0893 0.6334 28 1 3.7341 -4.6489 2.3013 29 1 2.1271 -4.8192 1.5550 30 1 5.8471 -1.9806 1.6716 31 1 5.2322 -3.4085 2.2619 32 1 3.9042 -0.9036 0.2359 33 1 3.8906 0.2256 1.6258 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235263975.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:53 Heat of formation + Delta-G solvation = -16.798271 kcal Electronic energy + Delta-G solvation = -13544.567621 eV Core-core repulsion = 11411.063886 eV Total energy + Delta-G solvation = -2133.503734 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.30409 -36.54782 -34.16017 -32.45169 -30.99888 -27.54559 -27.23357 -26.42739 -23.06573 -21.26540 -20.11445 -18.41540 -17.05816 -16.98918 -16.33298 -15.88987 -15.17603 -14.83161 -14.43187 -13.90583 -13.38730 -13.25466 -13.18616 -12.87340 -12.73391 -12.52460 -12.11653 -11.95224 -11.83062 -11.66570 -11.48246 -11.36068 -11.17737 -10.49359 -9.46363 -9.06614 -8.06079 -6.25398 1.35874 1.38687 1.49806 2.40356 3.14796 3.39458 3.81929 3.86881 4.00039 4.24176 4.54940 4.74988 4.76428 4.77062 4.94134 4.97643 5.09275 5.10886 5.17823 5.25313 5.28160 5.38648 5.51630 5.59899 5.68023 5.96005 6.15372 6.31071 6.37213 6.48797 6.74056 6.94188 7.44208 8.92356 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035988 B = 0.012589 C = 0.011015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.854754 B = 2223.555467 C = 2541.356165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.198 3.802 3 H 0.002 0.998 4 C -0.541 4.541 5 H 0.055 0.945 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.949 3.051 9 H -0.272 1.272 10 H -0.279 1.279 11 H -0.281 1.281 12 N -0.517 5.517 13 C 0.043 3.957 14 C -0.089 4.089 15 H 0.084 0.916 16 C -0.122 4.122 17 C 0.099 3.901 18 H 0.051 0.949 19 N -0.844 5.844 20 C 0.040 3.960 21 H 0.028 0.972 22 H 0.027 0.973 23 H 0.060 0.940 24 H 0.261 0.739 25 H 0.062 0.938 26 H 0.036 0.964 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.344 0.656 31 H 0.351 0.649 32 H 0.040 0.960 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.280 -7.546 8.481 12.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.090 3.910 3 H 0.020 0.980 4 C -0.580 4.580 5 H 0.073 0.927 6 C -0.181 4.181 7 N -0.555 5.555 8 Si 0.775 3.225 9 H -0.196 1.196 10 H -0.205 1.205 11 H -0.207 1.207 12 N -0.240 5.240 13 C -0.085 4.085 14 C -0.108 4.108 15 H 0.102 0.898 16 C -0.180 4.180 17 C -0.013 4.013 18 H 0.069 0.931 19 N -0.377 5.377 20 C -0.090 4.090 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.158 0.842 31 H 0.167 0.833 32 H 0.059 0.941 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.550 -7.230 8.140 11.799 hybrid contribution 0.780 -0.066 -0.970 1.247 sum 5.330 -7.295 7.170 11.534 Atomic orbital electron populations 1.21562 0.97264 0.98990 0.99657 1.19178 0.92826 0.92888 0.86110 0.97967 1.21890 1.31174 1.12530 0.92374 0.92736 1.25641 0.95223 0.95600 1.01667 1.70014 1.37541 1.24012 1.23908 0.85644 0.78184 0.78729 0.79935 1.19633 1.20516 1.20668 1.65661 1.07986 1.12086 1.38316 1.23028 0.98350 0.88919 0.98198 1.21983 0.94379 0.95482 0.99001 0.89787 1.21534 1.00727 0.94415 1.01297 1.21927 0.91104 0.92870 0.95398 0.93123 1.58775 1.06428 1.12010 1.60484 1.22990 0.89835 0.97377 0.98749 0.95310 0.95386 0.92136 0.92926 0.91964 0.94606 0.93567 0.90901 0.93010 0.84219 0.83329 0.94123 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.91 8.93 71.98 0.64 -5.27 16 2 C 0.20 10.41 2.45 44.17 0.11 10.52 16 3 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 4 C -0.54 -30.05 6.50 25.60 0.17 -29.89 16 5 H 0.05 3.08 5.68 -2.91 -0.02 3.07 16 6 C 0.02 1.01 5.30 84.65 0.45 1.46 16 7 N -0.92 -53.40 11.32 21.45 0.24 -53.16 16 8 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 9 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 N -0.52 -23.05 5.40 -860.72 -4.65 -27.70 16 13 C 0.04 1.74 4.84 86.45 0.42 2.16 16 14 C -0.09 -2.75 3.65 -9.90 -0.04 -2.78 16 15 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 16 C -0.12 -3.28 8.03 71.98 0.58 -2.70 16 17 C 0.10 3.02 4.17 45.81 0.19 3.21 16 18 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 19 N -0.84 -21.75 7.95 -164.97 -1.31 -23.06 16 20 C 0.04 1.59 6.00 86.45 0.52 2.11 16 21 H 0.03 1.38 7.06 -2.39 -0.02 1.37 16 22 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.06 3.35 6.07 -2.39 -0.01 3.33 16 24 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 25 H 0.06 2.43 7.70 -2.39 -0.02 2.41 16 26 H 0.04 1.65 5.62 -2.39 -0.01 1.63 16 27 H 0.05 1.47 7.71 -2.39 -0.02 1.45 16 28 H 0.07 1.52 7.08 -2.39 -0.02 1.51 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.34 7.93 9.06 -89.70 -0.81 7.11 16 31 H 0.35 7.09 7.50 -89.70 -0.67 6.42 16 32 H 0.04 1.88 6.14 -2.39 -0.01 1.87 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -61.21 252.18 -1.04 -62.25 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -0.38 Total: 16.19 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 3.04 Total: -21.17 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -5.72 Total: -103.92 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -61.21 -1.04 -62.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235263975.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.454 kcal (2) G-P(sol) polarization free energy of solvation -61.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds