Wall clock time and date at job start Mon Mar 30 2020 02:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 107.83487 * 2 1 4 4 C 1.53991 * 107.85553 * 243.51605 * 2 1 3 5 5 N 1.48828 * 110.60560 * 196.56820 * 4 2 1 6 6 C 1.46898 * 110.99850 * 196.20253 * 5 4 2 7 7 C 1.43916 * 112.04524 * 320.92269 * 5 4 2 8 8 C 1.52475 * 105.41643 * 98.70593 * 7 5 4 9 9 C 1.46644 * 114.11269 * 269.64350 * 8 7 5 10 10 N 1.43657 * 108.13922 * 116.71524 * 2 1 3 11 11 C 1.36944 * 120.55323 * 30.88243 * 10 2 1 12 12 H 1.07999 * 119.99920 * 333.11740 * 11 10 2 13 13 C 1.38804 * 120.00006 * 153.11620 * 11 10 2 14 14 N 1.31622 * 120.00247 * 342.57157 * 13 11 10 15 15 Si 1.86810 * 119.99877 * 162.57111 * 13 11 10 16 16 H 1.48493 * 109.47005 * 90.00021 * 15 13 11 17 17 H 1.48501 * 109.47040 * 209.99959 * 15 13 11 18 18 H 1.48500 * 109.46752 * 329.99813 * 15 13 11 19 19 H 1.09000 * 109.47088 * 303.28194 * 1 2 3 20 20 H 1.09006 * 109.46903 * 63.28084 * 1 2 3 21 21 H 1.08994 * 109.47313 * 183.28231 * 1 2 3 22 22 H 1.08994 * 109.33619 * 76.24201 * 4 2 1 23 23 H 1.09000 * 109.18206 * 316.79239 * 4 2 1 24 24 H 1.09000 * 109.47099 * 181.35056 * 6 5 4 25 25 H 1.09000 * 109.47255 * 301.35559 * 6 5 4 26 26 H 1.09007 * 109.47265 * 61.35506 * 6 5 4 27 27 H 1.09004 * 110.25028 * 339.73601 * 7 5 4 28 28 H 1.09001 * 110.36846 * 217.74780 * 7 5 4 29 29 H 1.09002 * 108.55350 * 148.44090 * 8 7 5 30 30 H 1.09006 * 108.43702 * 30.75953 * 8 7 5 31 31 H 1.08995 * 109.95068 * 298.76690 * 9 8 7 32 32 H 1.09002 * 109.94766 * 177.50813 * 9 8 7 33 33 H 0.97001 * 120.00021 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8639 1.0377 0.0000 4 6 2.0022 -0.6536 -1.3119 5 7 3.4337 -1.0489 -1.2146 6 6 3.9990 -1.3112 -2.5448 7 6 4.2168 -0.0721 -0.5048 8 6 4.3443 -0.6096 0.9163 9 6 3.2791 -0.1672 1.8219 10 7 1.9773 -0.6137 1.2194 11 6 1.2322 -1.5935 1.8197 12 1 0.1626 -1.6244 1.6735 13 6 1.8517 -2.5467 2.6160 14 7 3.1520 -2.7317 2.5303 15 14 0.8398 -3.5672 3.8096 16 1 0.3690 -4.8009 3.1304 17 1 1.6771 -3.9351 4.9796 18 1 -0.3309 -2.7767 4.2676 19 1 -0.3633 0.5639 0.8591 20 1 -0.3633 0.4621 -0.9180 21 1 -0.3633 -1.0259 0.0588 22 1 1.8801 0.0539 -2.1320 23 1 1.3978 -1.5391 -1.5087 24 1 5.0390 -1.6212 -2.4429 25 1 3.4299 -2.1030 -3.0318 26 1 3.9477 -0.4039 -3.1468 27 1 3.7049 0.8903 -0.4996 28 1 5.2021 0.0279 -0.9603 29 1 5.3024 -0.2877 1.3242 30 1 4.3345 -1.6988 0.8751 31 1 3.2944 0.9189 1.9115 32 1 3.4112 -0.6242 2.8027 33 1 3.5849 -3.3982 3.0865 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235325026.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:20 Heat of formation + Delta-G solvation = 25.270454 kcal Electronic energy + Delta-G solvation = -13907.397815 eV Core-core repulsion = 11775.718317 eV Total energy + Delta-G solvation = -2131.679498 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.02175 -36.59970 -34.44099 -33.28285 -30.03577 -27.77653 -27.33061 -25.54982 -23.56065 -21.60873 -20.47011 -18.03084 -17.29705 -16.41835 -16.25242 -15.85433 -15.23788 -14.81674 -14.16497 -13.84147 -13.56877 -13.34462 -13.10414 -13.02391 -12.71635 -12.41666 -12.26713 -12.17124 -11.80475 -11.63962 -11.37032 -11.12298 -10.96640 -10.35319 -8.83792 -8.47716 -7.69108 -5.12911 1.49876 1.52075 1.60046 2.60566 3.26705 3.43483 3.67824 4.24537 4.26370 4.38671 4.54057 4.59112 4.62588 4.73803 4.75434 4.86065 4.97756 5.01203 5.02622 5.08626 5.28169 5.36772 5.52607 5.58984 5.75266 5.83593 6.29459 6.42258 6.56377 6.68983 7.30652 8.03388 8.56161 9.35028 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.038268 B = 0.014213 C = 0.012570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.501751 B = 1969.592446 C = 2227.055750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.167 3.833 3 H 0.038 0.962 4 C 0.045 3.955 5 N -0.556 5.556 6 C 0.031 3.969 7 C 0.073 3.927 8 C -0.120 4.120 9 C 0.170 3.830 10 N -0.587 5.587 11 C -0.252 4.252 12 H 0.071 0.929 13 C -0.046 4.046 14 N -0.915 5.915 15 Si 0.953 3.047 16 H -0.292 1.292 17 H -0.297 1.297 18 H -0.275 1.275 19 H 0.046 0.954 20 H 0.068 0.932 21 H 0.044 0.956 22 H 0.043 0.957 23 H 0.046 0.954 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.031 0.969 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.074 0.926 31 H 0.017 0.983 32 H 0.054 0.946 33 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.023 5.779 -6.994 9.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.058 3.942 3 H 0.056 0.944 4 C -0.085 4.085 5 N -0.280 5.280 6 C -0.117 4.117 7 C -0.055 4.055 8 C -0.159 4.159 9 C 0.046 3.954 10 N -0.308 5.308 11 C -0.382 4.382 12 H 0.088 0.912 13 C -0.242 4.242 14 N -0.561 5.561 15 Si 0.783 3.217 16 H -0.220 1.220 17 H -0.224 1.224 18 H -0.200 1.200 19 H 0.065 0.935 20 H 0.086 0.914 21 H 0.063 0.937 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.132 5.261 -6.612 8.451 hybrid contribution -0.279 -0.278 0.284 0.486 sum -0.148 4.983 -6.328 8.056 Atomic orbital electron populations 1.21965 0.95703 1.01200 1.00818 1.20117 0.94114 0.94137 0.85809 0.94447 1.23323 0.88299 0.98434 0.98421 1.61631 1.02589 1.46111 1.17680 1.22421 1.00051 0.99971 0.89284 1.21495 0.96336 0.92778 0.94930 1.20866 0.96770 1.03774 0.94480 1.20123 0.85054 0.93096 0.97110 1.44399 1.22968 1.42293 1.21189 1.19440 0.90642 1.04189 1.23972 0.91160 1.25638 0.96677 0.98401 1.03470 1.70183 1.09500 1.35473 1.40899 0.85502 0.78265 0.78840 0.79088 1.21958 1.22387 1.20009 0.93481 0.91350 0.93687 0.93863 0.93538 0.91556 0.92143 0.95087 0.94374 0.91180 0.94897 0.90786 0.96534 0.92744 0.94905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.09 8.07 71.98 0.58 -4.51 16 2 C 0.17 6.91 2.25 45.85 0.10 7.01 16 3 H 0.04 1.48 6.89 -2.38 -0.02 1.46 16 4 C 0.05 1.74 5.36 86.26 0.46 2.20 16 5 N -0.56 -21.99 4.27 -923.99 -3.95 -25.93 16 6 C 0.03 0.95 9.30 127.69 1.19 2.14 16 7 C 0.07 2.75 5.50 86.68 0.48 3.23 16 8 C -0.12 -5.38 5.16 28.45 0.15 -5.23 16 9 C 0.17 8.21 5.33 83.68 0.45 8.66 16 10 N -0.59 -29.13 2.69 -683.92 -1.84 -30.97 16 11 C -0.25 -13.71 8.91 84.03 0.75 -12.96 16 12 H 0.07 3.74 5.90 -2.91 -0.02 3.73 16 13 C -0.05 -2.57 4.94 84.86 0.42 -2.15 16 14 N -0.91 -53.33 9.53 21.65 0.21 -53.12 16 15 Si 0.95 45.57 29.59 68.60 2.03 47.60 16 16 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 17 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 18 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 19 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 20 H 0.07 2.02 8.12 -2.38 -0.02 2.00 16 21 H 0.04 1.80 6.56 -2.39 -0.02 1.78 16 22 H 0.04 1.41 7.98 -2.39 -0.02 1.39 16 23 H 0.05 1.91 7.98 -2.39 -0.02 1.89 16 24 H 0.07 1.93 8.00 -2.39 -0.02 1.91 16 25 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.03 0.83 8.12 -2.38 -0.02 0.81 16 27 H 0.04 1.39 6.13 -2.39 -0.01 1.37 16 28 H 0.07 2.29 7.54 -2.39 -0.02 2.27 16 29 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 30 H 0.07 4.00 6.25 -2.38 -0.01 3.99 16 31 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 2.98 6.13 -2.39 -0.01 2.96 16 33 H 0.24 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -60.74 248.67 2.09 -58.66 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 1.06 Total: 5.38 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 4.57 Total: -1.61 kcal Atomic # 7 Polarization: -104.45 SS G_CDS: -5.58 Total: -110.03 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -60.74 2.09 -58.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235325026.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.929 kcal (2) G-P(sol) polarization free energy of solvation -60.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds