Wall clock time and date at job start Mon Mar 30 2020 02:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.50783 * 2 1 4 4 C 1.53054 * 109.48515 * 120.05043 * 2 1 3 5 5 N 1.46963 * 109.36504 * 61.56755 * 4 2 1 6 6 C 1.46895 * 110.99645 * 183.18264 * 5 4 2 7 7 C 1.46955 * 110.87794 * 59.32025 * 5 4 2 8 8 H 1.08994 * 109.51244 * 60.65356 * 7 5 4 9 9 C 1.50700 * 109.48784 * 180.71439 * 7 5 4 10 10 H 1.08005 * 120.00074 * 33.34756 * 9 7 5 11 11 C 1.37881 * 119.99892 * 213.35945 * 9 7 5 12 12 N 1.31510 * 119.99913 * 6.90006 * 11 9 7 13 13 Si 1.86799 * 119.99685 * 186.90441 * 11 9 7 14 14 H 1.48502 * 109.47089 * 89.99954 * 13 11 9 15 15 H 1.48497 * 109.46928 * 209.99562 * 13 11 9 16 16 H 1.48492 * 109.47377 * 329.99773 * 13 11 9 17 17 C 1.53059 * 109.36492 * 300.67596 * 7 5 4 18 18 N 1.46956 * 109.46976 * 239.95169 * 2 1 3 19 19 C 1.46897 * 111.01892 * 63.20037 * 18 2 1 20 20 H 1.08991 * 109.46904 * 299.94902 * 1 2 3 21 21 H 1.08994 * 109.47005 * 59.94950 * 1 2 3 22 22 H 1.09009 * 109.47024 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.49071 * 301.59832 * 4 2 1 24 24 H 1.09000 * 109.48359 * 181.53046 * 4 2 1 25 25 H 1.08996 * 109.47703 * 290.03455 * 6 5 4 26 26 H 1.09005 * 109.47090 * 50.03615 * 6 5 4 27 27 H 1.09004 * 109.46597 * 170.03377 * 6 5 4 28 28 H 0.96998 * 119.99464 * 179.97438 * 12 11 9 29 29 H 1.08993 * 109.48985 * 178.37236 * 17 7 5 30 30 H 1.09000 * 109.48510 * 298.41615 * 17 7 5 31 31 H 1.08997 * 109.47176 * 292.23548 * 19 18 2 32 32 H 1.09003 * 109.46787 * 52.23278 * 19 18 2 33 33 H 1.08999 * 109.47135 * 172.22939 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0406 -0.7225 1.2489 5 7 1.5808 -2.1182 1.2266 6 6 1.9877 -2.8260 2.4478 7 6 2.0712 -2.8121 0.0276 8 1 3.1612 -2.8124 0.0274 9 6 1.5680 -4.2326 0.0276 10 1 0.5992 -4.4623 0.4463 11 6 2.3443 -5.2390 -0.5067 12 7 3.5758 -4.9852 -0.8921 13 14 1.6468 -6.9628 -0.6832 14 1 0.9953 -7.0997 -2.0107 15 1 2.7449 -7.9555 -0.5661 16 1 0.6456 -7.2037 0.3867 17 6 1.5606 -2.0895 -1.2214 18 7 2.0199 -0.6938 -1.1993 19 6 1.6126 0.0138 -2.4205 20 1 -0.3633 0.5130 0.8904 21 1 -0.3633 0.5146 -0.8895 22 1 -0.3633 -1.0278 -0.0005 23 1 1.6544 -0.2266 2.1394 24 1 3.1303 -0.6988 1.2628 25 1 3.0678 -2.9727 2.4401 26 1 1.7075 -2.2358 3.3203 27 1 1.4897 -3.7948 2.4892 28 1 4.1220 -5.6934 -1.2676 29 1 1.9468 -2.5855 -2.1118 30 1 0.4709 -2.1137 -1.2354 31 1 0.5311 -0.0556 -2.5371 32 1 1.9038 1.0616 -2.3475 33 1 2.1009 -0.4397 -3.2831 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251674453.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:18 Heat of formation + Delta-G solvation = 12.434784 kcal Electronic energy + Delta-G solvation = -13692.671668 eV Core-core repulsion = 11560.435574 eV Total energy + Delta-G solvation = -2132.236094 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.79734 -34.79682 -32.80204 -30.74855 -28.52725 -26.61366 -24.94258 -24.16029 -22.24711 -20.85720 -17.74839 -16.43390 -15.42458 -14.79763 -14.48714 -13.97410 -13.55659 -13.45674 -12.97708 -12.48467 -11.94881 -11.69277 -11.51259 -11.47874 -11.01463 -10.91643 -10.85165 -10.62197 -10.33259 -10.11603 -9.78962 -9.58170 -8.97376 -8.50883 -7.52701 -7.03000 -6.03498 -4.08343 3.29743 3.36814 3.40218 4.39620 4.71386 5.11006 5.33187 5.50616 5.69509 5.75388 5.91363 5.97696 6.12721 6.22867 6.28507 6.35233 6.36045 6.51209 6.57148 6.63707 6.77171 6.95810 7.00977 7.27767 7.63982 7.77928 7.84466 7.94069 8.12725 8.30745 8.68072 9.08508 9.57471 11.03689 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.040659 B = 0.012573 C = 0.010968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.488868 B = 2226.534724 C = 2552.372985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.086 3.914 3 H 0.068 0.932 4 C 0.061 3.939 5 N -0.543 5.543 6 C 0.049 3.951 7 C 0.207 3.793 8 H 0.040 0.960 9 C -0.507 4.507 10 H 0.061 0.939 11 C 0.065 3.935 12 N -0.888 5.888 13 Si 0.893 3.107 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.073 3.927 18 N -0.544 5.544 19 C 0.027 3.973 20 H 0.049 0.951 21 H 0.041 0.959 22 H 0.076 0.924 23 H 0.059 0.941 24 H 0.028 0.972 25 H 0.014 0.986 26 H 0.036 0.964 27 H 0.071 0.929 28 H 0.262 0.738 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.020 0.980 32 H 0.054 0.946 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.483 7.368 1.158 8.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.023 4.023 3 H 0.086 0.914 4 C -0.068 4.068 5 N -0.268 5.268 6 C -0.099 4.099 7 C 0.100 3.900 8 H 0.058 0.942 9 C -0.546 4.546 10 H 0.079 0.921 11 C -0.138 4.138 12 N -0.526 5.526 13 Si 0.721 3.279 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.054 4.054 18 N -0.268 5.268 19 C -0.122 4.122 20 H 0.068 0.932 21 H 0.060 0.940 22 H 0.095 0.905 23 H 0.078 0.922 24 H 0.046 0.954 25 H 0.033 0.967 26 H 0.055 0.945 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.302 7.272 1.066 8.058 hybrid contribution -0.281 -0.919 -0.249 0.992 sum -3.583 6.354 0.817 7.340 Atomic orbital electron populations 1.22310 0.97597 1.03343 1.00045 1.21652 0.93066 0.96529 0.91038 0.91400 1.22055 0.97271 0.91670 0.95827 1.62328 1.59953 1.00338 1.04200 1.21999 0.97986 0.99075 0.90849 1.19449 0.95888 0.91099 0.83525 0.94210 1.21000 1.03282 0.90977 1.39334 0.92115 1.25017 0.94471 0.98959 0.95356 1.69964 1.07235 1.33356 1.42051 0.86577 0.78680 0.84015 0.78623 1.20594 1.21335 1.19790 1.22471 0.96953 0.84806 1.01198 1.62500 1.59392 1.03978 1.00925 1.22291 0.97908 0.98269 0.93711 0.93204 0.94044 0.90484 0.92217 0.95402 0.96695 0.94467 0.90984 0.92836 0.91471 0.95510 0.96131 0.92685 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 8.37 37.16 0.31 -2.62 16 2 C 0.09 1.57 2.96 -67.65 -0.20 1.37 16 3 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 4 C 0.06 1.18 5.04 -3.76 -0.02 1.16 16 5 N -0.54 -12.13 4.09 -236.12 -0.97 -13.09 16 6 C 0.05 1.04 9.19 60.06 0.55 1.59 16 7 C 0.21 5.28 2.08 -68.80 -0.14 5.13 16 8 H 0.04 1.18 7.27 -51.93 -0.38 0.80 16 9 C -0.51 -13.83 7.07 -34.44 -0.24 -14.07 16 10 H 0.06 1.68 7.80 -52.48 -0.41 1.27 16 11 C 0.06 1.79 5.45 -17.82 -0.10 1.69 16 12 N -0.89 -25.74 12.79 55.43 0.71 -25.03 16 13 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 C 0.07 1.71 4.50 -3.76 -0.02 1.70 16 18 N -0.54 -11.04 4.92 -234.73 -1.15 -12.20 16 19 C 0.03 0.45 9.09 60.06 0.55 0.99 16 20 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.04 0.64 6.66 -51.93 -0.35 0.29 16 22 H 0.08 1.51 5.94 -51.92 -0.31 1.20 16 23 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.01 0.32 8.12 -51.93 -0.42 -0.10 16 26 H 0.04 0.66 8.03 -51.93 -0.42 0.24 16 27 H 0.07 1.59 7.23 -51.93 -0.38 1.22 16 28 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 30 H 0.03 0.63 6.35 -51.93 -0.33 0.30 16 31 H 0.02 0.33 6.80 -51.93 -0.35 -0.02 16 32 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 255.70 15.07 3.85 3.85 Total: -1.00 -28.54 255.70 -7.31 -35.85 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.42 Total: -2.52 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 0.69 Total: -3.05 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -1.41 Total: -50.32 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.54 -7.31 -35.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251674453.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.288 kcal (2) G-P(sol) polarization free energy of solvation -28.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds