Wall clock time and date at job start Mon Mar 30 2020 02:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.06287 * 2 1 4 4 C 1.54516 * 109.07797 * 241.03605 * 2 1 3 5 5 C 1.50738 * 108.95633 * 163.47435 * 4 2 1 6 6 N 1.48074 * 112.93702 * 92.64925 * 5 4 2 7 7 C 1.46905 * 110.99826 * 192.22207 * 6 5 4 8 8 C 1.47738 * 113.78778 * 318.28666 * 6 5 4 9 9 H 1.08998 * 108.99318 * 79.50131 * 8 6 5 10 10 C 1.50702 * 108.99609 * 198.25378 * 8 6 5 11 11 H 1.08002 * 120.00320 * 87.56966 * 10 8 6 12 12 C 1.37883 * 119.99706 * 267.57064 * 10 8 6 13 13 N 1.31504 * 119.99818 * 185.02458 * 12 10 8 14 14 Si 1.86804 * 120.00023 * 5.02029 * 12 10 8 15 15 H 1.48501 * 109.46737 * 84.65493 * 14 12 10 16 16 H 1.48493 * 109.47027 * 204.65912 * 14 12 10 17 17 H 1.48498 * 109.47163 * 324.66019 * 14 12 10 18 18 C 1.50787 * 111.91146 * 318.87640 * 8 6 5 19 19 N 1.40084 * 109.07852 * 119.03289 * 2 1 3 20 20 H 1.08994 * 109.47520 * 300.96472 * 1 2 3 21 21 H 1.08997 * 109.47696 * 60.96835 * 1 2 3 22 22 H 1.09010 * 109.46946 * 180.96713 * 1 2 3 23 23 H 1.09007 * 109.55656 * 283.31992 * 4 2 1 24 24 H 1.09009 * 109.55612 * 43.63296 * 4 2 1 25 25 H 1.08999 * 108.79081 * 331.75994 * 5 4 2 26 26 H 1.09000 * 108.79395 * 213.54564 * 5 4 2 27 27 H 1.08999 * 109.47177 * 192.91198 * 7 6 5 28 28 H 1.09001 * 109.47127 * 312.91999 * 7 6 5 29 29 H 1.09001 * 109.46606 * 72.91858 * 7 6 5 30 30 H 0.96998 * 119.99931 * 180.02562 * 13 12 10 31 31 H 1.09003 * 109.73373 * 334.97185 * 18 8 6 32 32 H 1.08993 * 109.77913 * 214.28929 * 18 8 6 33 33 H 1.00895 * 111.00080 * 55.26564 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8859 1.0303 0.0000 4 6 2.0350 -0.7072 -1.2776 5 6 3.4867 -0.3601 -1.4881 6 7 4.4096 -1.3440 -0.8775 7 6 5.7852 -0.8292 -0.8505 8 6 3.9897 -1.8031 0.4625 9 1 3.2119 -2.5586 0.3511 10 6 5.1730 -2.4200 1.1628 11 1 5.8439 -1.7992 1.7382 12 6 5.3992 -3.7769 1.0689 13 7 6.3723 -4.3305 1.7587 14 14 4.3232 -4.8288 -0.0380 15 1 4.8470 -4.7821 -1.4268 16 1 4.3347 -6.2317 0.4486 17 1 2.9325 -4.3086 -0.0159 18 6 3.4571 -0.6709 1.3040 19 7 1.9878 -0.6425 1.1575 20 1 -0.3634 0.5287 0.8811 21 1 -0.3634 0.4987 -0.8985 22 1 -0.3633 -1.0276 0.0173 23 1 1.9306 -1.7861 -1.1630 24 1 1.4516 -0.3717 -2.1352 25 1 3.6801 0.6200 -1.0523 26 1 3.6843 -0.3108 -2.5589 27 1 6.4727 -1.6417 -0.6152 28 1 6.0361 -0.4117 -1.8256 29 1 5.8674 -0.0522 -0.0905 30 1 6.5316 -5.2850 1.6924 31 1 3.8796 0.2733 0.9603 32 1 3.7198 -0.8330 2.3493 33 1 1.5988 -1.5703 1.2340 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251678615.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:39 Heat of formation + Delta-G solvation = 8.921900 kcal Electronic energy + Delta-G solvation = -13760.650181 eV Core-core repulsion = 11628.261757 eV Total energy + Delta-G solvation = -2132.388424 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.16324 -35.15524 -32.81196 -31.63397 -28.88968 -27.72244 -24.61192 -23.61861 -22.41623 -20.64610 -18.63247 -16.87536 -15.36735 -15.26550 -14.69541 -14.39375 -13.90794 -13.31687 -12.74190 -12.57209 -12.46131 -11.96383 -11.61605 -11.46305 -11.41081 -10.91862 -10.76125 -10.58674 -10.44511 -10.35324 -9.76197 -9.61319 -9.19161 -8.63996 -7.83882 -7.00635 -6.11976 -4.14393 3.35186 3.41570 3.48276 4.44715 4.77862 4.80635 5.08027 5.38332 5.41731 5.54922 5.78450 5.83959 5.94726 6.02400 6.14209 6.23028 6.29790 6.33169 6.41742 6.46066 6.55908 6.66806 6.72932 7.06928 7.19929 7.51628 7.81718 8.00138 8.11571 8.36782 8.56209 8.90575 9.51254 10.99216 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.038828 B = 0.013714 C = 0.012865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.961259 B = 2041.206582 C = 2175.881492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.101 3.899 3 H 0.067 0.933 4 C -0.160 4.160 5 C 0.056 3.944 6 N -0.555 5.555 7 C 0.055 3.945 8 C 0.140 3.860 9 H 0.053 0.947 10 C -0.510 4.510 11 H 0.073 0.927 12 C 0.080 3.920 13 N -0.895 5.895 14 Si 0.896 3.104 15 H -0.273 1.273 16 H -0.298 1.298 17 H -0.270 1.270 18 C 0.056 3.944 19 N -0.703 5.703 20 H 0.058 0.942 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.019 0.981 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.032 0.968 29 H 0.011 0.989 30 H 0.265 0.735 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.359 6.500 -4.977 11.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.012 4.012 3 H 0.085 0.915 4 C -0.200 4.200 5 C -0.072 4.072 6 N -0.281 5.281 7 C -0.093 4.093 8 C 0.034 3.966 9 H 0.071 0.929 10 C -0.549 4.549 11 H 0.091 0.909 12 C -0.124 4.124 13 N -0.532 5.532 14 Si 0.725 3.275 15 H -0.198 1.198 16 H -0.224 1.224 17 H -0.195 1.195 18 C -0.074 4.074 19 N -0.333 5.333 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.038 0.962 26 H 0.072 0.928 27 H 0.101 0.899 28 H 0.051 0.949 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.328 6.512 -4.865 11.637 hybrid contribution -0.172 -0.575 -0.841 1.033 sum -8.500 5.937 -5.706 11.834 Atomic orbital electron populations 1.21894 0.95311 1.01649 1.01329 1.20543 0.94511 0.97932 0.88193 0.91535 1.22451 0.96144 1.01994 0.99434 1.21773 0.92608 0.94145 0.98645 1.62647 1.01515 1.37711 1.26229 1.21948 0.91377 0.99033 0.96928 1.20444 0.97890 0.93834 0.84407 0.92902 1.20894 1.10615 0.93186 1.30170 0.90876 1.25058 0.94928 0.97972 0.94411 1.69920 1.31154 1.11877 1.40263 0.86582 0.81290 0.78039 0.81629 1.19825 1.22449 1.19516 1.22374 0.84389 0.98843 1.01761 1.57997 1.11866 1.25057 1.38390 0.92254 0.92775 0.92995 0.91254 0.91982 0.96248 0.92849 0.89929 0.94903 0.97065 0.92572 0.92973 0.89954 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.28 37.15 0.34 -1.49 16 2 C 0.10 1.57 2.63 -70.44 -0.18 1.39 16 3 H 0.07 1.06 7.59 -51.93 -0.39 0.66 16 4 C -0.16 -2.62 5.02 -27.07 -0.14 -2.76 16 5 C 0.06 1.02 4.94 -4.31 -0.02 1.00 16 6 N -0.55 -12.05 4.91 -237.34 -1.17 -13.22 16 7 C 0.06 1.16 8.61 60.07 0.52 1.68 16 8 C 0.14 3.23 1.29 -69.51 -0.09 3.14 16 9 H 0.05 1.28 3.76 -51.93 -0.20 1.09 16 10 C -0.51 -13.73 6.37 -34.44 -0.22 -13.95 16 11 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 12 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 13 N -0.90 -26.70 13.96 55.43 0.77 -25.93 16 14 Si 0.90 22.26 27.56 -169.99 -4.68 17.57 16 15 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.30 -7.37 7.11 56.52 0.40 -6.96 16 17 H -0.27 -6.44 6.06 56.52 0.34 -6.10 16 18 C 0.06 1.14 5.72 -4.50 -0.03 1.11 16 19 N -0.70 -12.52 6.02 -110.91 -0.67 -13.18 16 20 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 21 H 0.05 0.60 8.12 -51.93 -0.42 0.18 16 22 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 23 H 0.07 1.28 7.19 -51.92 -0.37 0.91 16 24 H 0.06 0.87 8.03 -51.92 -0.42 0.45 16 25 H 0.02 0.35 6.41 -51.93 -0.33 0.02 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.08 1.96 6.95 -51.93 -0.36 1.60 16 28 H 0.03 0.60 8.04 -51.93 -0.42 0.18 16 29 H 0.01 0.23 7.62 -51.93 -0.40 -0.17 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.05 1.07 6.27 -51.93 -0.33 0.74 16 32 H 0.08 1.79 7.72 -51.93 -0.40 1.39 16 33 H 0.34 6.11 7.99 -39.29 -0.31 5.79 16 LS Contribution 248.52 15.07 3.75 3.75 Total: -1.00 -28.40 248.52 -7.14 -35.54 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -5.23 Total: 3.18 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 0.09 Total: -7.71 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -1.06 Total: -52.33 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.68 Total: 17.57 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.40 -7.14 -35.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251678615.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.466 kcal (2) G-P(sol) polarization free energy of solvation -28.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds