Wall clock time and date at job start Mon Mar 30 2020 02:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.06287 * 2 1 4 4 C 1.54516 * 109.07797 * 241.03605 * 2 1 3 5 5 C 1.50738 * 108.95633 * 163.47435 * 4 2 1 6 6 N 1.48074 * 112.93702 * 92.64925 * 5 4 2 7 7 C 1.46905 * 110.99826 * 192.22207 * 6 5 4 8 8 C 1.47738 * 113.78778 * 318.28666 * 6 5 4 9 9 H 1.08998 * 108.99318 * 79.50131 * 8 6 5 10 10 C 1.50702 * 108.99609 * 198.25378 * 8 6 5 11 11 H 1.08002 * 120.00320 * 87.56966 * 10 8 6 12 12 C 1.37883 * 119.99706 * 267.57064 * 10 8 6 13 13 N 1.31504 * 119.99818 * 185.02458 * 12 10 8 14 14 Si 1.86804 * 120.00023 * 5.02029 * 12 10 8 15 15 H 1.48501 * 109.46737 * 84.65493 * 14 12 10 16 16 H 1.48493 * 109.47027 * 204.65912 * 14 12 10 17 17 H 1.48498 * 109.47163 * 324.66019 * 14 12 10 18 18 C 1.50787 * 111.91146 * 318.87640 * 8 6 5 19 19 N 1.40084 * 109.07852 * 119.03289 * 2 1 3 20 20 H 1.08994 * 109.47520 * 300.96472 * 1 2 3 21 21 H 1.08997 * 109.47696 * 60.96835 * 1 2 3 22 22 H 1.09010 * 109.46946 * 180.96713 * 1 2 3 23 23 H 1.09007 * 109.55656 * 283.31992 * 4 2 1 24 24 H 1.09009 * 109.55612 * 43.63296 * 4 2 1 25 25 H 1.08999 * 108.79081 * 331.75994 * 5 4 2 26 26 H 1.09000 * 108.79395 * 213.54564 * 5 4 2 27 27 H 1.08999 * 109.47177 * 192.91198 * 7 6 5 28 28 H 1.09001 * 109.47127 * 312.91999 * 7 6 5 29 29 H 1.09001 * 109.46606 * 72.91858 * 7 6 5 30 30 H 0.96998 * 119.99931 * 180.02562 * 13 12 10 31 31 H 1.09003 * 109.73373 * 334.97185 * 18 8 6 32 32 H 1.08993 * 109.77913 * 214.28929 * 18 8 6 33 33 H 1.00895 * 111.00080 * 55.26564 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8859 1.0303 0.0000 4 6 2.0350 -0.7072 -1.2776 5 6 3.4867 -0.3601 -1.4881 6 7 4.4096 -1.3440 -0.8775 7 6 5.7852 -0.8292 -0.8505 8 6 3.9897 -1.8031 0.4625 9 1 3.2119 -2.5586 0.3511 10 6 5.1730 -2.4200 1.1628 11 1 5.8439 -1.7992 1.7382 12 6 5.3992 -3.7769 1.0689 13 7 6.3723 -4.3305 1.7587 14 14 4.3232 -4.8288 -0.0380 15 1 4.8470 -4.7821 -1.4268 16 1 4.3347 -6.2317 0.4486 17 1 2.9325 -4.3086 -0.0159 18 6 3.4571 -0.6709 1.3040 19 7 1.9878 -0.6425 1.1575 20 1 -0.3634 0.5287 0.8811 21 1 -0.3634 0.4987 -0.8985 22 1 -0.3633 -1.0276 0.0173 23 1 1.9306 -1.7861 -1.1630 24 1 1.4516 -0.3717 -2.1352 25 1 3.6801 0.6200 -1.0523 26 1 3.6843 -0.3108 -2.5589 27 1 6.4727 -1.6417 -0.6152 28 1 6.0361 -0.4117 -1.8256 29 1 5.8674 -0.0522 -0.0905 30 1 6.5316 -5.2850 1.6924 31 1 3.8796 0.2733 0.9603 32 1 3.7198 -0.8330 2.3493 33 1 1.5988 -1.5703 1.2340 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251678615.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:39 Heat of formation + Delta-G solvation = -12.905852 kcal Electronic energy + Delta-G solvation = -13761.596703 eV Core-core repulsion = 11628.261757 eV Total energy + Delta-G solvation = -2133.334946 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.69009 -36.72622 -34.70394 -33.36145 -30.23663 -29.47987 -26.31598 -25.29111 -23.98904 -21.98986 -20.37715 -18.93071 -16.92135 -16.83545 -16.21452 -16.12022 -15.54168 -14.92318 -14.55826 -14.24539 -13.83202 -13.62313 -13.13490 -12.90669 -12.81061 -12.72644 -12.46442 -12.03333 -11.91189 -11.83155 -11.63207 -11.34877 -11.17914 -10.80310 -9.34534 -8.68143 -8.29603 -6.34300 1.35121 1.41697 1.48794 2.37068 2.92395 3.39522 3.49819 3.85599 4.08269 4.24524 4.41512 4.50779 4.53686 4.65974 4.70911 4.82687 4.82777 4.91214 4.98357 5.04326 5.14413 5.26780 5.32905 5.37150 5.41142 5.56719 6.11126 6.32463 6.46852 6.58355 6.73013 6.84756 7.33215 8.85247 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.038828 B = 0.013714 C = 0.012865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.961259 B = 2041.206582 C = 2175.881492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.095 3.905 3 H 0.068 0.932 4 C -0.155 4.155 5 C 0.055 3.945 6 N -0.570 5.570 7 C 0.063 3.937 8 C 0.151 3.849 9 H 0.047 0.953 10 C -0.503 4.503 11 H 0.034 0.966 12 C 0.027 3.973 13 N -0.942 5.942 14 Si 0.954 3.046 15 H -0.276 1.276 16 H -0.296 1.296 17 H -0.251 1.251 18 C 0.067 3.933 19 N -0.697 5.697 20 H 0.061 0.939 21 H 0.077 0.923 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.094 0.906 25 H 0.024 0.976 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.006 0.994 30 H 0.265 0.735 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.701 7.430 -6.737 14.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.017 4.017 3 H 0.086 0.914 4 C -0.195 4.195 5 C -0.072 4.072 6 N -0.297 5.297 7 C -0.085 4.085 8 C 0.044 3.956 9 H 0.064 0.936 10 C -0.542 4.542 11 H 0.053 0.947 12 C -0.172 4.172 13 N -0.582 5.582 14 Si 0.780 3.220 15 H -0.201 1.201 16 H -0.222 1.222 17 H -0.176 1.176 18 C -0.063 4.063 19 N -0.327 5.327 20 H 0.080 0.920 21 H 0.095 0.905 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.112 0.888 25 H 0.042 0.958 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.025 0.975 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.695 7.467 -6.633 14.633 hybrid contribution 0.594 -0.754 -0.297 1.005 sum -10.102 6.713 -6.930 13.969 Atomic orbital electron populations 1.21823 0.92649 1.02177 1.02691 1.20700 0.96579 0.97457 0.86927 0.91372 1.22441 0.95262 1.00821 1.01013 1.21902 0.92929 0.93189 0.99204 1.62443 1.02388 1.39735 1.25090 1.21821 0.90645 0.97579 0.98456 1.20263 0.95665 0.94428 0.85257 0.93579 1.21068 1.10913 0.92871 1.29387 0.94731 1.25801 0.96233 0.99370 0.95801 1.70046 1.33410 1.12221 1.42531 0.85652 0.80509 0.76493 0.79331 1.20127 1.22246 1.17576 1.22056 0.86443 0.97817 1.00007 1.57979 1.09570 1.25215 1.39971 0.91969 0.90454 0.92835 0.93152 0.88753 0.95765 0.91090 0.93483 0.91806 0.97515 0.92575 0.92829 0.91996 0.83920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.28 71.98 0.67 -2.24 16 2 C 0.10 2.65 2.63 46.66 0.12 2.77 16 3 H 0.07 1.91 7.59 -2.38 -0.02 1.90 16 4 C -0.16 -4.48 5.02 30.38 0.15 -4.33 16 5 C 0.05 1.81 4.94 85.34 0.42 2.23 16 6 N -0.57 -23.87 4.91 -904.80 -4.45 -28.31 16 7 C 0.06 2.63 8.61 127.69 1.10 3.73 16 8 C 0.15 6.86 1.29 43.29 0.06 6.91 16 9 H 0.05 2.17 3.76 -2.39 -0.01 2.16 16 10 C -0.50 -27.83 6.37 25.60 0.16 -27.66 16 11 H 0.03 2.13 8.06 -2.91 -0.02 2.10 16 12 C 0.03 1.56 5.47 84.66 0.46 2.02 16 13 N -0.94 -58.07 13.96 21.45 0.30 -57.77 16 14 Si 0.95 45.96 27.56 68.60 1.89 47.85 16 15 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 16 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 17 H -0.25 -11.25 6.06 99.48 0.60 -10.65 16 18 C 0.07 2.70 5.72 85.43 0.49 3.19 16 19 N -0.70 -23.38 6.02 -504.80 -3.04 -26.42 16 20 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 21 H 0.08 1.32 8.12 -2.39 -0.02 1.30 16 22 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 23 H 0.05 1.68 7.19 -2.38 -0.02 1.66 16 24 H 0.09 2.15 8.03 -2.38 -0.02 2.13 16 25 H 0.02 0.79 6.41 -2.39 -0.02 0.77 16 26 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.05 2.27 6.95 -2.39 -0.02 2.25 16 28 H 0.06 2.22 8.04 -2.39 -0.02 2.21 16 29 H 0.01 0.26 7.62 -2.39 -0.02 0.25 16 30 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 31 H 0.05 2.14 6.27 -2.39 -0.01 2.12 16 32 H 0.06 2.73 7.72 -2.39 -0.02 2.71 16 33 H 0.34 11.51 7.99 -89.70 -0.72 10.80 16 Total: -1.00 -61.74 248.52 -1.40 -63.13 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.26 Total: 14.89 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 3.63 Total: -13.37 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -7.18 Total: -112.50 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.89 Total: 47.85 kcal Total: -61.74 -1.40 -63.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251678615.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.228 kcal (2) G-P(sol) polarization free energy of solvation -61.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds