Wall clock time and date at job start Mon Mar 30 2020 02:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 108.66953 * 2 1 4 4 C 1.50746 * 108.78934 * 118.29710 * 2 1 3 5 5 C 1.54506 * 108.94578 * 213.53707 * 4 2 1 6 6 N 1.40078 * 111.51364 * 283.99234 * 5 4 2 7 7 C 1.46903 * 111.00562 * 188.14697 * 6 5 4 8 8 C 1.47687 * 114.57330 * 61.44878 * 6 5 4 9 9 H 1.08998 * 109.73637 * 38.33699 * 8 6 5 10 10 C 1.50702 * 109.74278 * 159.04068 * 8 6 5 11 11 H 1.08000 * 119.99509 * 54.95419 * 10 8 6 12 12 C 1.37870 * 120.00198 * 234.95742 * 10 8 6 13 13 N 1.31519 * 120.00151 * 173.98020 * 12 10 8 14 14 Si 1.86802 * 120.00017 * 353.98250 * 12 10 8 15 15 H 1.48498 * 109.47243 * 84.86138 * 14 12 10 16 16 H 1.48503 * 109.47323 * 204.86251 * 14 12 10 17 17 H 1.48498 * 109.47029 * 324.86162 * 14 12 10 18 18 C 1.50784 * 108.09282 * 278.68927 * 8 6 5 19 19 N 1.47742 * 111.91381 * 94.61201 * 18 8 6 20 20 H 1.08997 * 109.46512 * 301.70713 * 1 2 3 21 21 H 1.09004 * 109.46538 * 61.70123 * 1 2 3 22 22 H 1.08996 * 109.47227 * 181.70507 * 1 2 3 23 23 H 1.09006 * 109.55842 * 93.69971 * 4 2 1 24 24 H 1.09000 * 109.64575 * 333.43326 * 4 2 1 25 25 H 1.09001 * 109.07565 * 163.46325 * 5 4 2 26 26 H 1.09007 * 109.06932 * 44.51077 * 5 4 2 27 27 H 1.09000 * 109.46430 * 53.26481 * 7 6 5 28 28 H 1.09000 * 109.47039 * 293.26900 * 7 6 5 29 29 H 1.09002 * 109.47424 * 173.26312 * 7 6 5 30 30 H 0.96999 * 119.99978 * 179.97438 * 13 12 10 31 31 H 1.08996 * 108.99322 * 333.97930 * 18 8 6 32 32 H 1.09002 * 108.92532 * 215.19299 * 18 8 6 33 33 H 1.00899 * 111.00274 * 192.81060 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8789 1.0326 0.0000 4 6 2.0156 -0.6765 1.2566 5 6 3.3303 -0.0048 1.7120 6 7 4.4135 -0.4063 0.9198 7 6 5.6824 0.0824 1.4760 8 6 4.2924 -0.0555 -0.5096 9 1 3.8358 0.9292 -0.6096 10 6 5.6564 -0.0525 -1.1505 11 1 6.2858 -0.9277 -1.0847 12 6 6.1007 1.0675 -1.8206 13 7 7.3332 1.1148 -2.2772 14 14 4.9523 2.5178 -2.0799 15 1 4.9827 3.3938 -0.8813 16 1 5.3918 3.2907 -3.2693 17 1 3.5693 2.0216 -2.2954 18 6 3.4202 -1.0910 -1.1736 19 7 2.0070 -0.6646 -1.2343 20 1 -0.3632 0.5401 0.8743 21 1 -0.3632 0.4872 -0.9049 22 1 -0.3633 -1.0272 0.0306 23 1 2.1958 -1.7327 1.0561 24 1 1.2644 -0.5769 2.0401 25 1 3.5279 -0.2754 2.7492 26 1 3.2200 1.0775 1.6424 27 1 5.7610 -0.2187 2.5206 28 1 5.7140 1.1699 1.4080 29 1 6.5134 -0.3413 0.9122 30 1 7.6457 1.9027 -2.7489 31 1 3.4858 -2.0229 -0.6121 32 1 3.7831 -1.2616 -2.1871 33 1 1.4069 -1.4362 -1.4845 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251678618.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:42 Heat of formation + Delta-G solvation = 10.188968 kcal Electronic energy + Delta-G solvation = -13759.285522 eV Core-core repulsion = 11626.952042 eV Total energy + Delta-G solvation = -2132.333480 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.93527 -35.13708 -33.05311 -31.59704 -28.71351 -27.89169 -24.77590 -23.32550 -22.64281 -20.09582 -18.65533 -17.05752 -15.42214 -15.09213 -14.66744 -14.27536 -13.82386 -13.57140 -12.89316 -12.53512 -12.31326 -11.91240 -11.71291 -11.52924 -11.17883 -10.98128 -10.86970 -10.58835 -10.23514 -9.96176 -9.87650 -9.74721 -9.13078 -8.58582 -7.66647 -7.14335 -6.13661 -4.13453 3.27994 3.37530 3.49031 4.40778 4.74115 4.86902 5.15418 5.29639 5.34346 5.62181 5.70005 5.84485 5.98984 6.09188 6.22795 6.26151 6.34591 6.38465 6.46171 6.55226 6.67226 6.72356 6.75727 7.19097 7.32964 7.50786 7.75981 8.05321 8.20031 8.27059 8.75577 8.93139 9.50444 10.98244 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036201 B = 0.015062 C = 0.012810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.284089 B = 1858.531561 C = 2185.328849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.083 3.917 3 H 0.069 0.931 4 C -0.143 4.143 5 C 0.078 3.922 6 N -0.566 5.566 7 C 0.056 3.944 8 C 0.187 3.813 9 H 0.023 0.977 10 C -0.508 4.508 11 H 0.080 0.920 12 C 0.078 3.922 13 N -0.893 5.893 14 Si 0.867 3.133 15 H -0.281 1.281 16 H -0.289 1.289 17 H -0.252 1.252 18 C 0.075 3.925 19 N -0.699 5.699 20 H 0.055 0.945 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.005 0.995 27 H 0.033 0.967 28 H 0.011 0.989 29 H 0.087 0.913 30 H 0.265 0.735 31 H 0.028 0.972 32 H 0.077 0.923 33 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.428 -1.693 5.601 11.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 H 0.087 0.913 4 C -0.182 4.182 5 C -0.053 4.053 6 N -0.291 5.291 7 C -0.091 4.091 8 C 0.082 3.918 9 H 0.040 0.960 10 C -0.547 4.547 11 H 0.098 0.902 12 C -0.125 4.125 13 N -0.530 5.530 14 Si 0.694 3.306 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.176 1.176 18 C -0.053 4.053 19 N -0.330 5.330 20 H 0.074 0.926 21 H 0.078 0.922 22 H 0.069 0.931 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.023 0.977 27 H 0.052 0.948 28 H 0.030 0.970 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.095 0.905 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.137 -1.464 5.220 11.495 hybrid contribution -0.617 0.975 0.420 1.228 sum -10.754 -0.489 5.640 12.153 Atomic orbital electron populations 1.21990 0.95580 1.01324 1.01737 1.21342 0.93756 0.99095 0.88442 0.91337 1.22165 0.96923 1.01086 0.98053 1.20927 0.91773 0.95799 0.96792 1.59362 1.01646 1.63653 1.04451 1.21997 0.93421 0.97138 0.96590 1.19466 0.95941 0.93112 0.83294 0.95955 1.20790 0.99003 1.01525 1.33336 0.90199 1.25014 0.94624 0.97917 0.94963 1.69895 1.15426 1.29749 1.37911 0.86979 0.83096 0.82747 0.77790 1.20754 1.21489 1.17648 1.22097 0.84889 0.97507 1.00800 1.60724 1.04769 1.34527 1.32967 0.92558 0.92243 0.93095 0.91297 0.91890 0.92715 0.97675 0.94807 0.97032 0.89421 0.92510 0.95389 0.90504 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.93 37.16 0.33 -1.62 16 2 C 0.08 1.41 2.65 -68.19 -0.18 1.23 16 3 H 0.07 1.34 6.52 -51.93 -0.34 1.00 16 4 C -0.14 -2.31 5.18 -27.07 -0.14 -2.45 16 5 C 0.08 1.45 4.95 -6.56 -0.03 1.41 16 6 N -0.57 -12.30 4.20 -241.36 -1.01 -13.32 16 7 C 0.06 1.21 8.81 60.07 0.53 1.74 16 8 C 0.19 4.47 1.78 -69.54 -0.12 4.35 16 9 H 0.02 0.58 3.50 -51.93 -0.18 0.40 16 10 C -0.51 -13.93 6.43 -34.44 -0.22 -14.16 16 11 H 0.08 2.39 7.78 -52.49 -0.41 1.98 16 12 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 13 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 14 Si 0.87 21.91 26.93 -169.99 -4.58 17.33 16 15 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 17 H -0.25 -6.36 6.83 56.52 0.39 -5.97 16 18 C 0.08 1.62 5.66 -4.47 -0.03 1.60 16 19 N -0.70 -13.02 6.71 -107.66 -0.72 -13.74 16 20 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 21 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.07 1.17 7.19 -51.93 -0.37 0.79 16 24 H 0.06 0.86 7.69 -51.93 -0.40 0.46 16 25 H 0.05 0.92 7.87 -51.93 -0.41 0.51 16 26 H 0.01 0.11 7.60 -51.93 -0.39 -0.29 16 27 H 0.03 0.62 7.92 -51.93 -0.41 0.21 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 2.08 6.44 -51.93 -0.33 1.75 16 30 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.03 0.59 7.20 -51.93 -0.37 0.22 16 32 H 0.08 1.75 7.71 -51.93 -0.40 1.35 16 33 H 0.33 5.21 8.53 -39.29 -0.34 4.88 16 LS Contribution 249.47 15.07 3.76 3.76 Total: -1.00 -29.21 249.47 -6.94 -36.15 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.20 Total: 1.52 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 0.04 Total: -5.77 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.96 Total: -52.99 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.58 Total: 17.33 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.21 -6.94 -36.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251678618.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.341 kcal (2) G-P(sol) polarization free energy of solvation -29.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds