Wall clock time and date at job start Mon Mar 30 2020 02:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.79691 * 2 1 4 4 C 1.50803 * 109.63369 * 120.49991 * 2 1 3 5 5 C 1.53697 * 112.09298 * 212.24684 * 4 2 1 6 6 N 1.48060 * 112.47695 * 318.55232 * 5 4 2 7 7 C 1.46894 * 110.99996 * 192.19725 * 6 5 4 8 8 C 1.44577 * 113.85607 * 318.31338 * 6 5 4 9 9 C 1.54208 * 108.84236 * 94.22761 * 8 6 5 10 10 H 1.08999 * 108.95801 * 41.85952 * 9 8 6 11 11 C 1.50703 * 108.95406 * 160.51687 * 9 8 6 12 12 H 1.07996 * 120.00517 * 0.02562 * 11 9 8 13 13 C 1.37884 * 119.99693 * 180.02562 * 11 9 8 14 14 N 1.31519 * 119.99856 * 359.97438 * 13 11 9 15 15 Si 1.86794 * 119.99900 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47177 * 90.00129 * 15 13 11 17 17 H 1.48500 * 109.46972 * 209.99817 * 15 13 11 18 18 H 1.48499 * 109.47175 * 329.99925 * 15 13 11 19 19 N 1.40011 * 112.08411 * 281.18970 * 9 8 6 20 20 H 1.08995 * 109.46789 * 299.50418 * 1 2 3 21 21 H 1.08996 * 109.47118 * 59.50195 * 1 2 3 22 22 H 1.08999 * 109.47139 * 179.50284 * 1 2 3 23 23 H 1.09004 * 108.95570 * 91.57364 * 4 2 1 24 24 H 1.08997 * 108.95183 * 332.92443 * 4 2 1 25 25 H 1.09000 * 108.87786 * 79.32472 * 5 4 2 26 26 H 1.09001 * 108.87633 * 197.87445 * 5 4 2 27 27 H 1.08999 * 109.47333 * 63.95220 * 7 6 5 28 28 H 1.08996 * 109.47206 * 183.95287 * 7 6 5 29 29 H 1.09005 * 109.47069 * 303.94830 * 7 6 5 30 30 H 1.09000 * 109.57556 * 214.03561 * 8 6 5 31 31 H 1.08999 * 109.58102 * 334.42496 * 8 6 5 32 32 H 0.96998 * 119.99765 * 179.97438 * 14 13 11 33 33 H 1.00909 * 110.99764 * 188.10399 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8992 1.0256 0.0000 4 6 2.0367 -0.7209 1.2238 5 6 3.3654 -0.1371 1.7299 6 7 4.2978 0.1875 0.6265 7 6 5.6455 0.4653 1.1408 8 6 4.3376 -0.8110 -0.4183 9 6 3.3528 -0.4047 -1.5333 10 1 3.4384 0.6678 -1.7078 11 6 3.7186 -1.1353 -2.7996 12 1 4.5589 -1.8137 -2.8082 13 6 2.9804 -0.9376 -3.9473 14 7 1.9569 -0.1119 -3.9367 15 14 3.4334 -1.8437 -5.5167 16 1 2.7059 -3.1373 -5.5689 17 1 3.0578 -1.0168 -6.6916 18 1 4.8964 -2.0974 -5.5372 19 7 2.0269 -0.7070 -1.2004 20 1 -0.3633 0.5061 0.8944 21 1 -0.3633 0.5215 -0.8854 22 1 -0.3633 -1.0276 -0.0089 23 1 2.1824 -1.7733 0.9799 24 1 1.2911 -0.6423 2.0150 25 1 3.1587 0.7712 2.2958 26 1 3.8408 -0.8628 2.3898 27 1 6.0486 -0.4333 1.6076 28 1 6.2928 0.7690 0.3181 29 1 5.5950 1.2666 1.8781 30 1 5.3464 -0.8724 -0.8265 31 1 4.0474 -1.7789 -0.0097 32 1 1.4378 0.0275 -4.7441 33 1 1.4135 -0.5581 -1.9877 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251716279.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:44 Heat of formation + Delta-G solvation = -13.991936 kcal Electronic energy + Delta-G solvation = -13576.597764 eV Core-core repulsion = 11443.215721 eV Total energy + Delta-G solvation = -2133.382043 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.07106 -36.54381 -35.27032 -32.89369 -30.15966 -28.53890 -27.28207 -25.38079 -23.57693 -21.17225 -20.44979 -18.55294 -17.24784 -16.56177 -16.03721 -15.89749 -15.49739 -15.06627 -14.39000 -14.06433 -13.61659 -13.36747 -13.15282 -13.02720 -12.81141 -12.55171 -12.29986 -12.27226 -11.86111 -11.63050 -11.55490 -11.36414 -10.97782 -10.60458 -8.96996 -8.53269 -8.13431 -6.26839 1.42993 1.44123 1.54209 2.43070 3.10252 3.17326 3.90534 4.15991 4.22548 4.30078 4.45241 4.55770 4.57791 4.67653 4.78481 4.84198 4.91569 4.98841 4.99119 5.04613 5.11870 5.33761 5.40714 5.50525 5.61829 5.84054 6.16872 6.35651 6.44562 6.72764 7.31887 7.44343 7.50582 8.93699 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036915 B = 0.012675 C = 0.010045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.307601 B = 2208.542553 C = 2786.789907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.085 3.915 3 H 0.013 0.987 4 C -0.107 4.107 5 C 0.066 3.934 6 N -0.580 5.580 7 C 0.035 3.965 8 C 0.089 3.911 9 C 0.240 3.760 10 H -0.060 1.060 11 C -0.532 4.532 12 H 0.054 0.946 13 C 0.017 3.983 14 N -0.927 5.927 15 Si 0.965 3.035 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.270 1.270 19 N -0.696 5.696 20 H 0.080 0.920 21 H 0.035 0.965 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.039 0.961 27 H 0.028 0.972 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.029 0.971 32 H 0.266 0.734 33 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.777 -0.285 9.507 9.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.024 4.024 3 H 0.031 0.969 4 C -0.145 4.145 5 C -0.060 4.060 6 N -0.305 5.305 7 C -0.112 4.112 8 C -0.040 4.040 9 C 0.129 3.871 10 H -0.043 1.043 11 C -0.571 4.571 12 H 0.073 0.927 13 C -0.181 4.181 14 N -0.568 5.568 15 Si 0.791 3.209 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.194 1.194 19 N -0.335 5.335 20 H 0.099 0.901 21 H 0.055 0.945 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.109 0.891 25 H 0.097 0.903 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.665 -0.334 9.540 9.569 hybrid contribution 0.399 -0.110 -1.145 1.217 sum 1.064 -0.443 8.395 8.474 Atomic orbital electron populations 1.21840 0.94185 1.01895 1.01504 1.21134 0.94624 0.94567 0.92099 0.96888 1.21494 0.96302 0.99573 0.97164 1.22409 0.92550 0.99657 0.91423 1.60726 1.09955 1.47062 1.12800 1.22353 0.88585 1.00308 0.99998 1.21822 0.98502 0.92010 0.91676 1.17718 0.87118 0.91094 0.91187 1.04327 1.21669 1.13791 1.26177 0.95442 0.92724 1.25775 0.94828 0.95481 1.02013 1.69681 1.20001 1.37413 1.29697 0.85453 0.78570 0.78415 0.78497 1.20018 1.20868 1.19435 1.58347 1.05374 1.61080 1.08722 0.90096 0.94544 0.92274 0.93013 0.89062 0.90311 0.94324 0.95362 0.92283 0.90212 0.92935 0.95247 0.92501 0.81815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 9.02 71.98 0.65 -4.08 16 2 C 0.09 3.53 2.78 44.01 0.12 3.65 16 3 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 4 C -0.11 -3.67 4.92 30.12 0.15 -3.52 16 5 C 0.07 2.14 5.48 86.31 0.47 2.62 16 6 N -0.58 -22.36 4.20 -921.44 -3.87 -26.23 16 7 C 0.04 1.07 9.31 127.69 1.19 2.26 16 8 C 0.09 4.01 4.77 87.15 0.42 4.43 16 9 C 0.24 12.96 2.19 45.82 0.10 13.06 16 10 H -0.06 -3.77 8.07 -2.39 -0.02 -3.79 16 11 C -0.53 -30.47 8.65 25.60 0.22 -30.25 16 12 H 0.05 3.06 7.69 -2.91 -0.02 3.04 16 13 C 0.02 0.96 5.28 84.66 0.45 1.41 16 14 N -0.93 -53.91 11.26 21.45 0.24 -53.67 16 15 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 N -0.70 -35.37 5.65 -486.74 -2.75 -38.12 16 20 H 0.08 2.22 8.09 -2.39 -0.02 2.20 16 21 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.05 1.95 7.23 -2.38 -0.02 1.93 16 24 H 0.09 2.47 7.71 -2.39 -0.02 2.45 16 25 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.04 1.12 8.03 -2.39 -0.02 1.10 16 27 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 1.84 7.98 -2.39 -0.02 1.82 16 29 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.05 2.35 7.33 -2.39 -0.02 2.34 16 31 H 0.03 1.33 6.93 -2.39 -0.02 1.32 16 32 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 33 H 0.36 19.74 5.74 -89.69 -0.52 19.23 16 Total: -1.00 -62.63 255.75 -0.03 -62.67 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.55 Total: 19.40 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 3.77 Total: -10.42 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -6.37 Total: -118.01 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -62.63 -0.03 -62.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251716279.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.673 kcal (2) G-P(sol) polarization free energy of solvation -62.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds