Wall clock time and date at job start Mon Mar 30 2020 02:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 108.75969 * 2 1 4 4 C 1.50750 * 108.79259 * 241.75806 * 2 1 3 5 5 C 1.54511 * 108.94230 * 146.45769 * 4 2 1 6 6 N 1.40082 * 111.50891 * 76.00975 * 5 4 2 7 7 C 1.46904 * 110.99762 * 171.85299 * 6 5 4 8 8 C 1.47692 * 114.57272 * 298.54834 * 6 5 4 9 9 C 1.50779 * 108.09441 * 81.31162 * 8 6 5 10 10 H 1.09001 * 108.93120 * 25.97773 * 9 8 6 11 11 C 1.50706 * 108.99192 * 144.75924 * 9 8 6 12 12 H 1.07998 * 119.99503 * 2.40495 * 11 9 8 13 13 C 1.37871 * 120.00434 * 182.39959 * 11 9 8 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 9 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11 19 19 N 1.47741 * 111.91566 * 265.38731 * 9 8 6 20 20 H 1.08995 * 109.47459 * 301.64927 * 1 2 3 21 21 H 1.09008 * 109.46596 * 61.65361 * 1 2 3 22 22 H 1.08998 * 109.47107 * 181.64771 * 1 2 3 23 23 H 1.09008 * 109.55509 * 266.29635 * 4 2 1 24 24 H 1.08998 * 109.55585 * 26.61497 * 4 2 1 25 25 H 1.09002 * 109.07372 * 196.53466 * 5 4 2 26 26 H 1.09001 * 109.07308 * 315.49188 * 5 4 2 27 27 H 1.09003 * 109.46980 * 63.95746 * 7 6 5 28 28 H 1.09001 * 109.46793 * 183.95087 * 7 6 5 29 29 H 1.09000 * 109.47063 * 303.95416 * 7 6 5 30 30 H 1.09002 * 109.73431 * 321.66480 * 8 6 5 31 31 H 1.08998 * 109.73468 * 200.96129 * 8 6 5 32 32 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 33 33 H 1.00904 * 111.00177 * 275.06267 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8805 1.0321 0.0000 4 6 2.0156 -0.6753 -1.2572 5 6 3.3303 -0.0029 -1.7120 6 7 4.4136 -0.4052 -0.9201 7 6 5.6823 0.0843 -1.4758 8 6 4.2922 -0.0558 0.5098 9 6 3.4201 -1.0919 1.1726 10 1 3.4860 -2.0225 0.6091 11 6 3.9213 -1.3311 2.5737 12 1 4.7558 -0.7603 2.9534 13 6 3.3144 -2.2784 3.3706 14 7 2.2947 -2.9696 2.9101 15 14 3.9351 -2.5744 5.1075 16 1 4.9796 -3.6297 5.0866 17 1 4.5122 -1.3173 5.6478 18 1 2.8070 -3.0114 5.9686 19 7 2.0069 -0.6657 1.2337 20 1 -0.3634 0.5392 0.8748 21 1 -0.3633 0.4880 -0.9045 22 1 -0.3633 -1.0272 0.0295 23 1 2.1960 -1.7317 -1.0577 24 1 1.2638 -0.5734 -2.0399 25 1 3.5280 -0.2726 -2.7495 26 1 3.2200 1.0792 -1.6413 27 1 5.6931 1.1740 -1.4518 28 1 6.5114 -0.3003 -0.8819 29 1 5.7837 -0.2576 -2.5058 30 1 3.8356 0.9288 0.6106 31 1 5.2788 -0.0540 0.9732 32 1 1.9722 -2.8158 2.0083 33 1 1.8377 -0.0890 2.0443 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251716280.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:46 Heat of formation + Delta-G solvation = -15.364332 kcal Electronic energy + Delta-G solvation = -13619.906192 eV Core-core repulsion = 11486.464638 eV Total energy + Delta-G solvation = -2133.441554 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.52398 -36.66602 -35.39724 -32.68202 -30.16160 -28.65818 -26.78520 -25.65075 -23.57276 -21.84867 -20.49157 -18.94596 -16.94080 -16.69529 -16.29661 -16.04253 -15.55547 -14.89755 -14.45608 -14.19830 -13.77596 -13.38667 -13.13759 -12.81627 -12.68491 -12.60147 -12.48898 -12.14833 -12.10929 -11.86803 -11.68746 -11.34126 -10.45539 -10.42162 -9.25267 -8.84291 -8.34494 -6.22309 1.57493 1.65838 1.83035 2.64435 3.06509 3.24512 3.65175 3.92431 3.94102 4.13449 4.33652 4.37931 4.46377 4.50468 4.64651 4.69644 4.80374 4.84904 4.91945 4.96034 5.01412 5.09450 5.29747 5.41822 5.50999 5.96867 6.15149 6.29401 6.48857 6.75878 6.82269 7.03022 7.69091 8.99950 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035517 B = 0.012914 C = 0.010148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.161841 B = 2167.714226 C = 2758.537436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.079 3.921 3 H 0.015 0.985 4 C -0.111 4.111 5 C 0.077 3.923 6 N -0.577 5.577 7 C 0.034 3.966 8 C 0.070 3.930 9 C 0.217 3.783 10 H 0.004 0.996 11 C -0.635 4.635 12 H 0.040 0.960 13 C -0.012 4.012 14 N -0.920 5.920 15 Si 1.113 2.887 16 H -0.279 1.279 17 H -0.275 1.275 18 H -0.286 1.286 19 N -0.694 5.694 20 H 0.045 0.955 21 H 0.078 0.922 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.015 0.985 27 H 0.026 0.974 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.018 0.982 31 H 0.060 0.940 32 H 0.280 0.720 33 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.115 7.204 -7.902 10.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.030 4.030 3 H 0.033 0.967 4 C -0.149 4.149 5 C -0.052 4.052 6 N -0.302 5.302 7 C -0.113 4.113 8 C -0.059 4.059 9 C 0.109 3.891 10 H 0.022 0.978 11 C -0.674 4.674 12 H 0.058 0.942 13 C -0.216 4.216 14 N -0.555 5.555 15 Si 0.937 3.063 16 H -0.205 1.205 17 H -0.201 1.201 18 H -0.212 1.212 19 N -0.327 5.327 20 H 0.064 0.936 21 H 0.097 0.903 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.115 0.885 25 H 0.107 0.893 26 H 0.033 0.967 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.620 5.246 -6.828 8.633 hybrid contribution 0.670 2.455 -1.084 2.766 sum 1.290 7.701 -7.913 11.117 Atomic orbital electron populations 1.21794 0.93963 1.01504 1.01571 1.21334 0.96040 0.94406 0.91202 0.96747 1.21606 0.96752 0.99821 0.96691 1.21078 0.90685 0.96069 0.97411 1.59037 1.04050 1.64427 1.02646 1.22362 0.90573 0.97515 1.00863 1.22300 1.00236 0.96466 0.86867 1.18767 0.83562 0.92419 0.94339 0.97822 1.22386 1.19153 1.25209 1.00604 0.94171 1.26984 0.94251 0.92543 1.07796 1.70638 1.23931 1.40329 1.20602 0.82981 0.75463 0.76474 0.71380 1.20529 1.20060 1.21208 1.60764 1.22400 1.46627 1.02916 0.93583 0.90343 0.93464 0.93291 0.88466 0.89342 0.96713 0.95546 0.91947 0.89798 0.96421 0.92176 0.90781 0.85807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 9.27 71.98 0.67 -3.55 16 2 C 0.08 3.01 2.57 43.96 0.11 3.12 16 3 H 0.01 0.55 6.51 -2.39 -0.02 0.54 16 4 C -0.11 -3.84 5.19 30.38 0.16 -3.69 16 5 C 0.08 2.48 4.95 88.05 0.44 2.91 16 6 N -0.58 -21.55 4.23 -938.57 -3.97 -25.52 16 7 C 0.03 0.99 9.46 127.69 1.21 2.20 16 8 C 0.07 3.06 4.88 85.43 0.42 3.47 16 9 C 0.22 11.17 1.64 43.29 0.07 11.24 16 10 H 0.00 0.23 7.01 -2.39 -0.02 0.22 16 11 C -0.63 -36.03 8.29 25.60 0.21 -35.82 16 12 H 0.04 2.26 7.46 -2.91 -0.02 2.24 16 13 C -0.01 -0.68 5.38 84.65 0.46 -0.22 16 14 N -0.92 -56.77 13.49 21.45 0.29 -56.49 16 15 Si 1.11 51.01 29.90 68.60 2.05 53.06 16 16 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 19 N -0.69 -33.17 4.83 -476.25 -2.30 -35.47 16 20 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.08 1.99 7.99 -2.38 -0.02 1.97 16 22 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.05 2.05 7.19 -2.38 -0.02 2.04 16 24 H 0.10 2.69 7.63 -2.39 -0.02 2.67 16 25 H 0.09 2.38 7.91 -2.39 -0.02 2.37 16 26 H 0.01 0.47 7.59 -2.39 -0.02 0.45 16 27 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 1.84 7.95 -2.39 -0.02 1.83 16 29 H 0.08 2.03 7.98 -2.39 -0.02 2.01 16 30 H 0.02 0.76 6.77 -2.39 -0.02 0.75 16 31 H 0.06 2.70 7.08 -2.39 -0.02 2.68 16 32 H 0.28 17.68 6.35 -92.71 -0.59 17.09 16 33 H 0.32 16.19 8.51 -89.69 -0.76 15.42 16 Total: -1.00 -63.94 253.77 0.30 -63.64 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.49 Total: 21.11 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: 3.74 Total: -20.33 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -5.98 Total: -117.48 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.05 Total: 53.06 kcal Total: -63.94 0.30 -63.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251716280.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.273 kcal (2) G-P(sol) polarization free energy of solvation -63.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds