Wall clock time and date at job start Mon Mar 30 2020 02:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.50239 * 2 1 4 4 C 1.53033 * 109.53444 * 120.09725 * 2 1 3 5 5 N 1.46853 * 109.52262 * 179.14039 * 4 2 1 6 6 C 1.46906 * 110.99832 * 174.16246 * 5 4 2 7 7 C 1.50706 * 109.46929 * 190.25815 * 6 5 4 8 8 H 1.07998 * 119.99628 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99847 * 179.97438 * 7 6 5 10 10 N 1.31523 * 120.00067 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 119.99964 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46900 * 60.00713 * 11 9 7 13 13 H 1.48506 * 109.47330 * 180.02562 * 11 9 7 14 14 H 1.48492 * 109.47340 * 300.00547 * 11 9 7 15 15 C 1.46844 * 111.20068 * 298.25891 * 5 4 2 16 16 C 1.53045 * 109.52143 * 61.74346 * 15 5 4 17 17 C 1.53112 * 109.50818 * 239.92428 * 2 1 3 18 18 H 1.09001 * 109.52454 * 62.45732 * 17 2 1 19 19 N 1.46907 * 109.57276 * 302.30280 * 17 2 1 20 20 H 1.09000 * 109.47172 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47113 * 300.07866 * 1 2 3 22 22 H 1.09006 * 109.46665 * 60.07675 * 1 2 3 23 23 H 1.09001 * 109.46325 * 59.12600 * 4 2 1 24 24 H 1.09003 * 109.46551 * 299.16029 * 4 2 1 25 25 H 1.08998 * 109.47121 * 310.25481 * 6 5 4 26 26 H 1.09000 * 109.47141 * 70.25680 * 6 5 4 27 27 H 0.96995 * 119.99723 * 180.02562 * 10 9 7 28 28 H 1.09000 * 109.46299 * 181.75606 * 15 5 4 29 29 H 1.08997 * 109.46352 * 301.73051 * 15 5 4 30 30 H 1.08996 * 109.50312 * 60.75518 * 16 15 5 31 31 H 1.08994 * 109.50179 * 180.87913 * 16 15 5 32 32 H 1.00900 * 110.99620 * 180.28437 * 19 17 2 33 33 H 1.00899 * 110.99601 * 304.23774 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0417 -0.7232 1.2478 5 7 3.5101 -0.7411 1.2372 6 6 4.0388 -1.3047 2.4865 7 6 5.5274 -1.0785 2.5493 8 1 6.0303 -0.5669 1.7420 9 6 6.2471 -1.5239 3.6377 10 7 5.6345 -2.1465 4.6210 11 14 8.0923 -1.2442 3.7152 12 1 8.3744 0.2131 3.6706 13 1 8.6268 -1.8138 4.9782 14 1 8.7429 -1.9099 2.5582 15 6 4.0239 -1.4715 0.0715 16 6 3.5713 -0.7705 -1.2115 17 6 2.0413 -0.7233 -1.2489 18 1 1.7152 -0.1866 -2.1398 19 7 1.5084 -2.0920 -1.2778 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5151 0.8893 22 1 -0.3633 0.5127 -0.8907 23 1 1.6661 -1.7465 1.2542 24 1 1.6912 -0.2024 2.1389 25 1 3.5610 -0.8167 3.3361 26 1 3.8321 -2.3745 2.5186 27 1 6.1407 -2.4595 5.3869 28 1 5.1130 -1.4941 0.1082 29 1 3.6390 -2.4912 0.0833 30 1 3.9672 0.2448 -1.2304 31 1 3.9397 -1.3217 -2.0766 32 1 1.8364 -2.5905 -2.0914 33 1 1.7415 -2.5886 -0.4310 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251752340.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:47 Heat of formation + Delta-G solvation = -11.099138 kcal Electronic energy + Delta-G solvation = -13279.837863 eV Core-core repulsion = 11146.581262 eV Total energy + Delta-G solvation = -2133.256601 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.08439 -34.65188 -32.35914 -32.08540 -29.43298 -27.14594 -25.49643 -23.49109 -21.91773 -20.52752 -18.42628 -16.34900 -16.16515 -14.90937 -14.43057 -14.27223 -14.05322 -13.69846 -13.32278 -12.58388 -12.24353 -12.08864 -11.67052 -11.38628 -11.15231 -10.93542 -10.77512 -10.58420 -10.42481 -10.18549 -10.06295 -9.56698 -9.16834 -8.43971 -8.43736 -7.19642 -6.03237 -4.04872 3.32375 3.36493 3.39427 4.41319 4.79682 4.94641 5.02754 5.26941 5.32002 5.44024 5.56885 5.81328 5.92578 5.99251 6.01704 6.08933 6.16929 6.27815 6.43423 6.51508 6.59596 6.72133 6.75136 7.30750 7.34263 7.37189 7.62724 7.80033 8.10430 8.21821 8.56168 9.02596 9.59337 11.07534 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.058528 B = 0.008800 C = 0.008238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.291480 B = 3181.108486 C = 3398.209233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 H 0.076 0.924 4 C 0.059 3.941 5 N -0.537 5.537 6 C 0.194 3.806 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.898 3.102 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.278 1.278 15 C 0.065 3.935 16 C -0.153 4.153 17 C 0.095 3.905 18 H 0.072 0.928 19 N -0.844 5.844 20 H 0.063 0.937 21 H 0.046 0.954 22 H 0.047 0.953 23 H 0.023 0.977 24 H 0.067 0.933 25 H 0.030 0.970 26 H -0.011 1.011 27 H 0.262 0.738 28 H 0.082 0.918 29 H 0.014 0.986 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.333 0.667 33 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.484 1.692 -9.845 11.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.101 4.101 3 H 0.094 0.906 4 C -0.070 4.070 5 N -0.261 5.261 6 C 0.069 3.931 7 C -0.547 4.547 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.726 3.274 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.063 4.063 16 C -0.193 4.193 17 C -0.017 4.017 18 H 0.090 0.910 19 N -0.374 5.374 20 H 0.082 0.918 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.041 0.959 24 H 0.085 0.915 25 H 0.048 0.952 26 H 0.007 0.993 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.032 0.968 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.145 0.855 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.009 2.431 -9.720 12.227 hybrid contribution 1.822 -1.049 0.320 2.127 sum -5.187 1.382 -9.400 10.824 Atomic orbital electron populations 1.21663 0.95033 1.02212 1.00373 1.21187 0.95230 0.99595 0.94091 0.90608 1.22070 0.89782 0.97908 0.97219 1.62003 1.05010 1.54894 1.04239 1.19699 0.95420 0.92615 0.85399 1.21127 0.92215 1.36564 1.04765 0.91990 1.24996 0.98732 0.95306 0.95610 1.69953 1.36001 1.39140 1.08726 0.86559 0.85118 0.78548 0.77168 1.20155 1.21320 1.20345 1.21902 1.01300 0.93376 0.89755 1.22425 0.97134 1.02148 0.97562 1.21460 0.91995 0.90109 0.98093 0.90989 1.59070 1.66395 1.04097 1.07846 0.91831 0.93508 0.93386 0.95907 0.91471 0.95195 0.99301 0.92865 0.89937 0.96799 0.91003 0.92635 0.85494 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.02 37.16 0.34 -1.45 16 2 C -0.08 -1.25 2.71 -90.54 -0.25 -1.49 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.06 1.09 4.51 -3.83 -0.02 1.07 16 5 N -0.54 -11.66 4.65 -236.10 -1.10 -12.75 16 6 C 0.19 5.11 4.72 -4.97 -0.02 5.09 16 7 C -0.51 -14.38 8.43 -34.44 -0.29 -14.67 16 8 H 0.06 1.73 7.14 -52.49 -0.37 1.36 16 9 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 11 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C 0.07 1.26 5.06 -3.83 -0.02 1.25 16 16 C -0.15 -2.36 5.76 -26.65 -0.15 -2.51 16 17 C 0.10 1.34 3.19 -67.59 -0.22 1.13 16 18 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 19 N -0.84 -11.28 8.32 -4.56 -0.04 -11.32 16 20 H 0.06 0.87 7.55 -51.93 -0.39 0.48 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.02 0.42 6.64 -51.93 -0.34 0.08 16 24 H 0.07 1.27 8.01 -51.93 -0.42 0.85 16 25 H 0.03 0.85 7.98 -51.93 -0.41 0.43 16 26 H -0.01 -0.30 8.12 -51.93 -0.42 -0.73 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.08 1.77 6.72 -51.93 -0.35 1.42 16 29 H 0.01 0.27 6.84 -51.93 -0.36 -0.09 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.33 3.87 9.04 -39.29 -0.36 3.51 16 33 H 0.34 5.05 5.61 -39.29 -0.22 4.83 16 LS Contribution 256.77 15.07 3.87 3.87 Total: -1.00 -29.15 256.77 -7.59 -36.74 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.31 Total: 3.01 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -0.73 Total: -10.13 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.40 Total: -50.22 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.15 -7.59 -36.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251752340.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.640 kcal (2) G-P(sol) polarization free energy of solvation -29.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds