Wall clock time and date at job start Mon Mar 30 2020 02:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.77871 * 2 1 4 4 C 1.54330 * 110.71810 * 236.76439 * 2 1 3 5 5 N 1.47023 * 107.26856 * 219.44444 * 4 2 1 6 6 C 1.36930 * 125.64492 * 178.90499 * 5 4 2 7 7 H 1.08003 * 119.99984 * 180.02562 * 6 5 4 8 8 C 1.38817 * 120.00523 * 0.02606 * 6 5 4 9 9 N 1.31624 * 119.99400 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00273 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47020 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47092 * 120.00049 * 10 8 6 13 13 H 1.48500 * 109.46529 * 239.99911 * 10 8 6 14 14 C 1.47421 * 108.70424 * 358.94217 * 5 4 2 15 15 C 1.54909 * 104.83457 * 24.12799 * 14 5 4 16 16 H 1.09000 * 111.00569 * 81.06246 * 15 14 5 17 17 N 1.46897 * 111.00845 * 204.87818 * 15 14 5 18 18 C 1.46897 * 110.99807 * 295.28507 * 17 15 14 19 19 C 1.46905 * 110.99813 * 59.23529 * 17 15 14 20 20 H 1.09006 * 109.47773 * 181.77954 * 1 2 3 21 21 H 1.08998 * 109.47404 * 301.77992 * 1 2 3 22 22 H 1.09000 * 109.47476 * 61.78240 * 1 2 3 23 23 H 1.08999 * 109.87950 * 100.02816 * 4 2 1 24 24 H 1.08999 * 109.88100 * 338.86037 * 4 2 1 25 25 H 0.97002 * 119.99098 * 180.02562 * 9 8 6 26 26 H 1.09002 * 110.36901 * 142.96442 * 14 5 4 27 27 H 1.08995 * 110.36573 * 265.29016 * 14 5 4 28 28 H 1.09005 * 109.47260 * 60.00097 * 18 17 15 29 29 H 1.09005 * 109.46958 * 179.97438 * 18 17 15 30 30 H 1.08997 * 109.47422 * 299.99335 * 18 17 15 31 31 H 1.09006 * 109.47050 * 66.23760 * 19 17 15 32 32 H 1.09001 * 109.47373 * 186.23821 * 19 17 15 33 33 H 1.08996 * 109.47032 * 306.23979 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7912 -1.2074 5 7 3.2444 -1.5507 -0.7391 6 6 4.0033 -2.3979 -1.5016 7 1 4.8454 -2.9120 -1.0621 8 6 3.6904 -2.5961 -2.8395 9 7 2.6639 -1.9700 -3.3749 10 14 4.7253 -3.7525 -3.8794 11 1 5.8121 -4.3280 -3.0470 12 1 3.8694 -4.8472 -4.4029 13 1 5.3173 -3.0007 -5.0150 14 6 3.4632 -1.2499 0.6874 15 6 2.0789 -0.7956 1.2137 16 1 1.4451 -1.6537 1.4373 17 7 2.2217 0.0710 2.3912 18 6 2.8094 -0.6651 3.5184 19 6 3.0144 1.2661 2.0723 20 1 -0.3635 -1.0272 0.0319 21 1 -0.3634 0.5412 0.8736 22 1 -0.3634 0.4859 -0.9055 23 1 2.3740 -0.1023 -1.9978 24 1 1.3129 -1.4758 -1.5777 25 1 2.4451 -2.1088 -4.3097 26 1 3.7959 -2.1428 1.2168 27 1 4.1930 -0.4480 0.7983 28 1 3.7947 -1.0361 3.2359 29 1 2.9044 0.0000 4.3768 30 1 2.1657 -1.5053 3.7789 31 1 2.4671 1.8863 1.3624 32 1 3.1986 1.8340 2.9843 33 1 3.9655 0.9647 1.6336 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252493817.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:05 Heat of formation + Delta-G solvation = 33.756683 kcal Electronic energy + Delta-G solvation = -13480.004076 eV Core-core repulsion = 11348.692569 eV Total energy + Delta-G solvation = -2131.311507 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.79696 -35.16135 -32.54327 -30.66396 -27.46978 -27.33519 -25.66628 -24.31273 -22.28895 -19.76202 -18.79390 -16.86683 -15.93043 -14.63198 -14.45320 -14.05170 -13.63081 -13.18603 -13.02337 -12.32894 -12.16989 -11.82002 -11.60459 -11.45170 -11.29662 -11.02700 -10.80393 -10.73043 -10.27954 -10.02970 -9.79646 -9.62157 -9.50257 -8.58505 -7.89622 -6.76650 -5.68424 -3.01891 3.40654 3.45895 3.48553 4.32416 4.53833 5.29933 5.39360 5.47732 5.58342 5.68680 5.71578 5.75413 5.79268 5.98188 6.06995 6.10584 6.17951 6.29809 6.39030 6.58202 6.61080 6.68469 6.77844 6.88880 7.42199 7.48968 7.60586 7.69618 7.87822 8.29124 9.24973 9.85103 10.51880 11.42953 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049858 B = 0.010471 C = 0.009260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.454942 B = 2673.324579 C = 3023.146605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.116 4.116 3 H 0.070 0.930 4 C 0.183 3.817 5 N -0.604 5.604 6 C -0.227 4.227 7 H 0.076 0.924 8 C -0.009 4.009 9 N -0.921 5.921 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.291 1.291 14 C 0.106 3.894 15 C 0.072 3.928 16 H 0.087 0.913 17 N -0.535 5.535 18 C 0.024 3.976 19 C 0.015 3.985 20 H 0.050 0.950 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.040 0.960 24 H 0.049 0.951 25 H 0.251 0.749 26 H 0.034 0.966 27 H 0.020 0.980 28 H 0.027 0.973 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.600 4.207 9.481 10.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.135 4.135 3 H 0.088 0.912 4 C 0.058 3.942 5 N -0.330 5.330 6 C -0.356 4.356 7 H 0.094 0.906 8 C -0.205 4.205 9 N -0.568 5.568 10 Si 0.742 3.258 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.218 1.218 14 C -0.022 4.022 15 C -0.038 4.038 16 H 0.105 0.895 17 N -0.258 5.258 18 C -0.124 4.124 19 C -0.133 4.133 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.038 0.962 28 H 0.046 0.954 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.065 4.282 9.411 10.543 hybrid contribution 1.410 -0.894 -0.866 1.880 sum -0.655 3.388 8.545 9.216 Atomic orbital electron populations 1.21599 0.95143 1.01268 1.00500 1.22618 0.95574 0.99290 0.96046 0.91212 1.21251 0.88974 0.93075 0.90899 1.44391 1.32590 1.51493 1.04540 1.19104 1.07571 1.17603 0.91305 0.90573 1.24809 0.98478 1.00377 0.96873 1.69989 1.28738 1.45554 1.12556 0.86046 0.79265 0.80146 0.80336 1.20570 1.21732 1.21767 1.22152 0.95377 0.97172 0.87467 1.23044 0.97071 0.94940 0.88697 0.89507 1.62249 1.49462 1.07499 1.06622 1.22336 0.97975 0.98378 0.93753 1.22495 0.96886 0.93129 1.00791 0.93086 0.93224 0.93191 0.94170 0.93311 0.93833 0.94815 0.96236 0.95449 0.92094 0.91742 0.91120 0.92369 0.94505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.13 37.16 0.34 -1.84 16 2 C -0.12 -2.27 2.98 -88.78 -0.26 -2.54 16 3 H 0.07 1.33 5.67 -51.93 -0.29 1.03 16 4 C 0.18 4.58 4.97 -3.06 -0.02 4.56 16 5 N -0.60 -16.00 3.39 -170.07 -0.58 -16.58 16 6 C -0.23 -6.53 10.28 -15.06 -0.15 -6.69 16 7 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 8 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 9 N -0.92 -27.54 10.31 55.49 0.57 -26.97 16 10 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 C 0.11 2.31 5.63 -2.53 -0.01 2.30 16 15 C 0.07 1.35 2.67 -65.57 -0.18 1.17 16 16 H 0.09 1.68 8.04 -51.93 -0.42 1.26 16 17 N -0.54 -8.53 5.10 -240.57 -1.23 -9.76 16 18 C 0.02 0.33 9.39 60.06 0.56 0.89 16 19 C 0.02 0.22 8.86 60.07 0.53 0.75 16 20 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 24 H 0.05 1.34 7.06 -51.93 -0.37 0.97 16 25 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.03 0.73 8.01 -51.93 -0.42 0.31 16 27 H 0.02 0.44 5.71 -51.93 -0.30 0.14 16 28 H 0.03 0.39 7.23 -51.93 -0.38 0.01 16 29 H 0.06 0.71 8.05 -51.93 -0.42 0.29 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.05 6.23 -51.93 -0.32 0.72 16 32 H 0.06 0.72 8.01 -51.93 -0.42 0.30 16 33 H 0.04 0.59 5.77 -51.93 -0.30 0.29 16 LS Contribution 255.06 15.07 3.84 3.84 Total: -1.00 -30.35 255.06 -6.95 -37.30 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -5.25 Total: -3.57 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 0.72 Total: -1.74 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -1.23 Total: -53.31 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.35 -6.95 -37.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252493817.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.058 kcal (2) G-P(sol) polarization free energy of solvation -30.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds