Wall clock time and date at job start Mon Mar 30 2020 02:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00250 * 2 1 4 4 H 1.09000 * 110.76795 * 31.79796 * 3 2 1 5 5 C 1.55141 * 110.70723 * 268.59788 * 3 2 1 6 6 C 1.54906 * 101.65563 * 205.96297 * 5 3 2 7 7 N 1.47848 * 104.79430 * 37.06653 * 6 5 3 8 8 C 1.46897 * 110.99819 * 213.63470 * 7 6 5 9 9 H 1.08997 * 109.47551 * 299.87377 * 8 7 6 10 10 C 1.53005 * 109.46999 * 179.87735 * 8 7 6 11 11 C 1.50694 * 109.47337 * 59.87915 * 8 7 6 12 12 H 1.08007 * 119.99645 * 5.49567 * 11 8 7 13 13 C 1.37877 * 120.00720 * 185.49407 * 11 8 7 14 14 N 1.31523 * 119.99398 * 9.35652 * 13 11 8 15 15 Si 1.86796 * 120.00533 * 189.35709 * 13 11 8 16 16 H 1.48500 * 109.47165 * 84.99313 * 15 13 11 17 17 H 1.48502 * 109.47129 * 204.99585 * 15 13 11 18 18 H 1.48497 * 109.46983 * 324.99263 * 15 13 11 19 19 C 1.47437 * 108.57099 * 335.90501 * 7 6 5 20 20 H 1.08996 * 109.47060 * 59.99867 * 1 2 3 21 21 H 1.08996 * 109.47130 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47133 * 300.00529 * 1 2 3 23 23 H 1.00894 * 111.00416 * 236.04764 * 2 1 3 24 24 H 1.09000 * 110.98951 * 87.86976 * 5 3 2 25 25 H 1.08998 * 110.98823 * 324.05438 * 5 3 2 26 26 H 1.09000 * 110.37039 * 278.24193 * 6 5 3 27 27 H 1.08994 * 110.37495 * 155.89893 * 6 5 3 28 28 H 1.09004 * 109.47158 * 182.80793 * 10 8 7 29 29 H 1.09002 * 109.47060 * 302.80544 * 10 8 7 30 30 H 1.09003 * 109.46801 * 62.80756 * 10 8 7 31 31 H 0.96996 * 119.99412 * 180.02562 * 14 13 11 32 32 H 1.09001 * 109.88887 * 120.38676 * 19 7 6 33 33 H 1.08999 * 109.89290 * 241.42000 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3253 2.0427 0.5370 5 6 2.2252 1.8708 -1.4508 6 6 3.3377 2.9289 -1.2450 7 7 4.2049 2.3645 -0.1889 8 6 4.7617 3.4272 0.6587 9 1 5.3558 4.1061 0.0471 10 6 5.6490 2.8055 1.7391 11 6 3.6378 4.1910 1.3100 12 1 2.6170 3.8607 1.1854 13 6 3.9123 5.3115 2.0651 14 7 5.1248 5.8212 2.0685 15 14 2.5625 6.1056 3.0832 16 1 2.4641 5.4192 4.3964 17 1 2.8825 7.5399 3.2971 18 1 1.2677 5.9891 2.3655 19 6 3.4124 1.4120 0.6101 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8306 -0.5261 -0.7813 24 1 1.3215 2.3277 -1.8541 25 1 2.5710 1.0604 -2.0924 26 1 2.9060 3.8743 -0.9165 27 1 3.9034 3.0688 -2.1661 28 1 6.0222 3.5893 2.3983 29 1 5.0672 2.0893 2.3194 30 1 6.4897 2.2950 1.2694 31 1 5.3180 6.6093 2.6000 32 1 3.8650 0.4216 0.5626 33 1 3.3633 1.7478 1.6460 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252682273.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:20 Heat of formation + Delta-G solvation = -16.410079 kcal Electronic energy + Delta-G solvation = -13403.108042 eV Core-core repulsion = 11269.621141 eV Total energy + Delta-G solvation = -2133.486901 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.24227 -36.78067 -34.70829 -32.48570 -29.44191 -28.91437 -27.17616 -25.33124 -23.06702 -21.89776 -20.76186 -18.43216 -17.51662 -16.54022 -16.43829 -15.62368 -14.91790 -14.68834 -14.31610 -14.25461 -13.72262 -13.37428 -13.22213 -12.84955 -12.79642 -12.60617 -12.49838 -12.16848 -11.80529 -11.76523 -11.75033 -11.56612 -11.18520 -10.49343 -9.30555 -8.94766 -8.08366 -6.25017 1.36070 1.38431 1.45759 2.39168 3.13440 3.26083 3.54526 3.85155 3.98655 4.21210 4.54705 4.57945 4.67200 4.74380 4.82074 4.90813 4.99178 5.03968 5.07974 5.09736 5.18122 5.27740 5.31316 5.54189 5.64653 5.86298 6.09052 6.19224 6.37677 6.48934 6.62539 6.94697 7.43563 8.91543 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035228 B = 0.011907 C = 0.010264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.626210 B = 2350.933599 C = 2727.245774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.689 5.689 3 C 0.077 3.923 4 H 0.062 0.938 5 C -0.140 4.140 6 C 0.044 3.956 7 N -0.534 5.534 8 C 0.203 3.797 9 H 0.007 0.993 10 C -0.115 4.115 11 C -0.543 4.543 12 H 0.052 0.948 13 C 0.020 3.980 14 N -0.915 5.915 15 Si 0.944 3.056 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.271 1.271 19 C 0.064 3.936 20 H 0.027 0.973 21 H 0.085 0.915 22 H 0.053 0.947 23 H 0.350 0.650 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.035 0.965 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.032 0.968 31 H 0.262 0.738 32 H 0.071 0.929 33 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.685 -8.714 -4.797 12.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.320 5.320 3 C -0.034 4.034 4 H 0.080 0.920 5 C -0.179 4.179 6 C -0.084 4.084 7 N -0.258 5.258 8 C 0.095 3.905 9 H 0.025 0.975 10 C -0.173 4.173 11 C -0.582 4.582 12 H 0.071 0.929 13 C -0.180 4.180 14 N -0.554 5.554 15 Si 0.770 3.230 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.065 4.065 20 H 0.045 0.955 21 H 0.104 0.896 22 H 0.072 0.928 23 H 0.170 0.830 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.106 -8.909 -4.257 12.165 hybrid contribution -1.163 1.665 0.233 2.044 sum -8.269 -7.245 -4.024 11.707 Atomic orbital electron populations 1.22237 0.86904 1.02698 1.00203 1.60355 1.08627 1.12514 1.50457 1.22680 0.96016 0.89589 0.95118 0.91997 1.23269 0.98249 0.99182 0.97222 1.22851 0.93559 0.97004 0.95028 1.63940 1.32485 1.16436 1.12945 1.19226 0.93203 0.87943 0.90148 0.97452 1.21598 0.98040 0.98699 0.99002 1.21869 0.93732 1.10992 1.31563 0.92940 1.25646 0.97335 0.97198 0.97810 1.70074 1.21644 1.22803 1.40925 0.85788 0.80015 0.77556 0.79634 1.20113 1.21009 1.19581 1.22575 0.91449 0.96082 0.96411 0.95481 0.89595 0.92806 0.83033 0.90590 0.89483 0.94631 0.91337 0.94013 0.94366 0.94911 0.92896 0.91124 0.94112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.57 127.69 1.35 1.98 16 2 N -0.69 -18.25 6.66 -508.48 -3.39 -21.63 16 3 C 0.08 2.55 3.06 46.10 0.14 2.69 16 4 H 0.06 2.28 7.57 -2.39 -0.02 2.26 16 5 C -0.14 -4.20 6.66 31.98 0.21 -3.99 16 6 C 0.04 1.72 6.38 86.77 0.55 2.27 16 7 N -0.53 -23.24 5.21 -864.77 -4.50 -27.75 16 8 C 0.20 10.44 2.27 44.17 0.10 10.54 16 9 H 0.01 0.44 8.09 -2.39 -0.02 0.42 16 10 C -0.12 -5.68 8.96 71.98 0.65 -5.04 16 11 C -0.54 -29.45 6.13 25.60 0.16 -29.29 16 12 H 0.05 2.83 6.41 -2.91 -0.02 2.81 16 13 C 0.02 1.11 5.18 84.65 0.44 1.55 16 14 N -0.92 -53.34 12.15 21.45 0.26 -53.08 16 15 Si 0.94 43.74 29.55 68.60 2.03 45.76 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 C 0.06 2.50 5.12 86.65 0.44 2.95 16 20 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 21 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.05 1.26 8.08 -2.39 -0.02 1.25 16 23 H 0.35 7.97 8.29 -89.70 -0.74 7.23 16 24 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.09 2.27 7.77 -2.39 -0.02 2.26 16 26 H 0.04 1.59 6.39 -2.39 -0.02 1.57 16 27 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.04 2.23 6.84 -2.38 -0.02 2.21 16 29 H 0.04 1.78 6.36 -2.39 -0.02 1.77 16 30 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 32 H 0.07 2.63 8.03 -2.39 -0.02 2.61 16 33 H 0.04 1.83 5.57 -2.39 -0.01 1.82 16 Total: -1.00 -59.49 257.65 -1.23 -60.71 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.34 Total: 12.33 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 4.04 Total: -16.35 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -7.63 Total: -102.46 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -59.49 -1.23 -60.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252682273.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.302 kcal (2) G-P(sol) polarization free energy of solvation -59.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds