Wall clock time and date at job start Mon Mar 30 2020 02:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47673 * 2 1 4 4 C 1.50705 * 109.46859 * 119.99815 * 2 1 3 5 5 H 1.07999 * 120.00343 * 119.99624 * 4 2 1 6 6 C 1.37877 * 119.99865 * 300.00068 * 4 2 1 7 7 N 1.31517 * 119.99837 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00136 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.46673 * 90.00292 * 8 6 4 10 10 H 1.48502 * 109.47081 * 210.00185 * 8 6 4 11 11 H 1.48498 * 109.46953 * 330.00617 * 8 6 4 12 12 N 1.46901 * 109.47127 * 239.99531 * 2 1 3 13 13 C 1.47843 * 111.00037 * 44.65918 * 12 2 1 14 14 C 1.54905 * 104.79371 * 146.35992 * 13 12 2 15 15 C 1.55134 * 101.65911 * 322.93665 * 14 13 12 16 16 C 1.47437 * 110.99991 * 165.50765 * 12 2 1 17 17 H 1.08996 * 109.89491 * 117.33611 * 16 12 2 18 18 C 1.53003 * 109.89006 * 356.30704 * 16 12 2 19 19 N 1.46893 * 109.47053 * 177.24444 * 18 16 12 20 20 H 1.08995 * 109.47620 * 183.93724 * 1 2 3 21 21 H 1.09003 * 109.46839 * 303.94011 * 1 2 3 22 22 H 1.08997 * 109.46667 * 63.93286 * 1 2 3 23 23 H 0.97004 * 119.99791 * 179.97438 * 7 6 4 24 24 H 1.08996 * 110.37825 * 265.19485 * 13 12 2 25 25 H 1.09005 * 110.36911 * 27.53832 * 13 12 2 26 26 H 1.09003 * 110.98755 * 81.02575 * 14 13 12 27 27 H 1.09000 * 110.99117 * 204.80218 * 14 13 12 28 28 H 1.09006 * 110.70336 * 277.27511 * 15 14 13 29 29 H 1.08997 * 110.71278 * 154.03449 * 15 14 13 30 30 H 1.08997 * 109.47407 * 297.24993 * 18 16 12 31 31 H 1.09002 * 109.46663 * 57.24957 * 18 16 12 32 32 H 1.00906 * 110.99979 * 174.91905 * 19 18 16 33 33 H 1.00898 * 111.00309 * 298.87340 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1316 6 6 1.6991 -0.2393 2.4828 7 7 2.1379 -0.8589 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8746 2.6992 10 1 0.9771 1.9955 3.9070 11 1 0.8491 2.1773 1.4921 12 7 2.0197 -0.6926 -1.1994 13 6 1.2707 -0.2659 -2.4005 14 6 2.3078 -0.3113 -3.5502 15 6 3.5928 0.1795 -2.8329 16 6 3.4522 -0.4213 -1.4183 17 1 4.0199 -1.3493 -1.3516 18 6 3.9590 0.5749 -0.3734 19 7 5.4005 0.7881 -0.5588 20 1 -0.3634 -1.0252 0.0706 21 1 -0.3633 0.5738 0.8526 22 1 -0.3632 0.4516 -0.9231 23 1 1.9038 -0.5273 4.4376 24 1 0.4509 -0.9555 -2.6014 25 1 0.8918 0.7480 -2.2711 26 1 2.4330 -1.3279 -3.9232 27 1 2.0269 0.3663 -4.3564 28 1 3.6173 1.2684 -2.7883 29 1 4.4829 -0.2071 -3.3291 30 1 3.4336 1.5227 -0.4900 31 1 3.7759 0.1784 0.6253 32 1 5.7434 1.5034 0.0648 33 1 5.9120 -0.0731 -0.4373 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252692034.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:51 Heat of formation + Delta-G solvation = -5.067794 kcal Electronic energy + Delta-G solvation = -13703.032814 eV Core-core repulsion = 11570.037751 eV Total energy + Delta-G solvation = -2132.995063 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.60447 -35.73461 -35.10066 -33.46798 -30.25849 -29.48085 -27.02724 -24.75658 -23.32794 -21.68162 -19.93197 -18.81124 -17.50671 -16.86310 -16.35154 -15.86713 -15.62695 -14.77244 -14.59755 -14.31159 -14.26333 -13.48249 -13.40446 -12.82996 -12.61501 -12.30571 -12.14625 -11.98893 -11.79353 -11.73683 -11.51087 -11.33408 -11.19773 -10.73517 -9.48298 -8.85098 -8.28533 -6.24754 1.27564 1.31487 1.41058 2.29527 3.03591 3.24565 3.79019 3.92001 4.01480 4.11962 4.35183 4.52565 4.61726 4.65666 4.70909 4.72128 4.76415 4.95032 5.03966 5.09147 5.18749 5.29270 5.37444 5.41051 5.53807 5.68912 6.06150 6.18199 6.47289 6.62146 6.73698 6.75387 7.33797 8.88014 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036564 B = 0.014610 C = 0.012006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.596466 B = 1916.062910 C = 2331.529753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.173 3.827 3 H 0.005 0.995 4 C -0.480 4.480 5 H 0.034 0.966 6 C 0.013 3.987 7 N -0.947 5.947 8 Si 0.942 3.058 9 H -0.268 1.268 10 H -0.300 1.300 11 H -0.253 1.253 12 N -0.531 5.531 13 C 0.034 3.966 14 C -0.123 4.123 15 C -0.113 4.113 16 C 0.087 3.913 17 H 0.056 0.944 18 C 0.036 3.964 19 N -0.842 5.842 20 H 0.052 0.948 21 H 0.033 0.967 22 H 0.066 0.934 23 H 0.264 0.736 24 H 0.078 0.922 25 H 0.041 0.959 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.342 0.658 33 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.405 4.845 -11.766 12.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.065 3.935 3 H 0.023 0.977 4 C -0.519 4.519 5 H 0.053 0.947 6 C -0.184 4.184 7 N -0.588 5.588 8 Si 0.770 3.230 9 H -0.194 1.194 10 H -0.228 1.228 11 H -0.178 1.178 12 N -0.256 5.256 13 C -0.093 4.093 14 C -0.160 4.160 15 C -0.152 4.152 16 C -0.021 4.021 17 H 0.074 0.926 18 C -0.095 4.095 19 N -0.371 5.371 20 H 0.071 0.929 21 H 0.052 0.948 22 H 0.085 0.915 23 H 0.073 0.927 24 H 0.097 0.903 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.154 0.846 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.113 4.526 -12.242 13.052 hybrid contribution -0.221 0.868 1.821 2.030 sum -0.108 5.395 -10.421 11.735 Atomic orbital electron populations 1.22258 0.97470 1.01250 0.99883 1.19793 0.92048 0.92513 0.89129 0.97723 1.20979 1.29592 1.11619 0.89670 0.94738 1.25665 0.97480 0.99782 0.95464 1.70029 1.47919 1.42427 0.98451 0.85958 0.79583 0.80482 0.76997 1.19393 1.22757 1.17769 1.63631 1.02495 1.56846 1.02676 1.23165 0.97593 0.98709 0.89837 1.22731 0.94075 1.02282 0.96950 1.22632 0.98580 1.00044 0.93928 1.22099 0.88958 0.96328 0.94757 0.92551 1.22514 0.88771 0.98222 0.99973 1.58784 1.03455 1.13676 1.61150 0.92913 0.94800 0.91509 0.92678 0.90343 0.94093 0.90504 0.88983 0.91997 0.90176 0.93232 0.93152 0.84587 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.39 8.28 71.98 0.60 -5.79 16 2 C 0.17 8.03 1.15 44.17 0.05 8.08 16 3 H 0.01 0.26 4.69 -2.39 -0.01 0.25 16 4 C -0.48 -26.88 6.45 25.60 0.17 -26.71 16 5 H 0.03 2.20 8.06 -2.91 -0.02 2.18 16 6 C 0.01 0.75 5.45 84.65 0.46 1.21 16 7 N -0.95 -58.59 13.96 21.45 0.30 -58.29 16 8 Si 0.94 44.72 24.33 68.60 1.67 46.39 16 9 H -0.27 -12.20 6.90 99.48 0.69 -11.51 16 10 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 11 H -0.25 -11.24 6.53 99.48 0.65 -10.59 16 12 N -0.53 -21.85 5.01 -839.88 -4.21 -26.06 16 13 C 0.03 1.11 5.25 86.77 0.46 1.57 16 14 C -0.12 -3.19 7.08 31.98 0.23 -2.96 16 15 C -0.11 -3.35 6.23 31.77 0.20 -3.15 16 16 C 0.09 3.30 3.47 45.26 0.16 3.45 16 17 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 18 C 0.04 1.44 4.69 86.31 0.41 1.84 16 19 N -0.84 -26.94 9.34 -186.73 -1.74 -28.69 16 20 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 21 H 0.03 1.46 3.38 -2.39 -0.01 1.45 16 22 H 0.07 2.35 6.10 -2.39 -0.01 2.33 16 23 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 24 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.04 1.30 6.76 -2.38 -0.02 1.28 16 26 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.06 1.86 7.81 -2.38 -0.02 1.84 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.05 2.02 6.66 -2.39 -0.02 2.01 16 31 H 0.05 2.47 4.99 -2.39 -0.01 2.45 16 32 H 0.34 9.99 9.08 -89.69 -0.81 9.17 16 33 H 0.34 10.30 9.05 -89.70 -0.81 9.49 16 Total: -1.00 -63.04 244.98 -1.86 -64.90 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -0.59 Total: 24.20 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: 2.72 Total: -22.46 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -5.66 Total: -113.04 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.67 Total: 46.39 kcal Total: -63.04 -1.86 -64.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252692034.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.835 kcal (2) G-P(sol) polarization free energy of solvation -63.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds