Wall clock time and date at job start Mon Mar 30 2020 02:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.46222 * 2 1 4 4 C 1.53041 * 109.46268 * 119.95914 * 2 1 3 5 5 C 1.53197 * 109.31110 * 58.65347 * 4 2 1 6 6 N 1.46936 * 108.77173 * 54.63920 * 5 4 2 7 7 C 1.36933 * 120.62860 * 126.39005 * 6 5 4 8 8 H 1.08004 * 120.00006 * 207.68063 * 7 6 5 9 9 C 1.38820 * 120.00189 * 27.68066 * 7 6 5 10 10 N 1.31620 * 119.99681 * 17.35446 * 9 7 6 11 11 Si 1.86797 * 119.99816 * 197.36251 * 9 7 6 12 12 H 1.48495 * 109.47434 * 89.99872 * 11 9 7 13 13 H 1.48503 * 109.46798 * 210.00007 * 11 9 7 14 14 H 1.48496 * 109.47256 * 329.99518 * 11 9 7 15 15 C 1.46932 * 118.76500 * 306.40904 * 6 5 4 16 16 C 1.53047 * 109.46021 * 240.02793 * 2 1 3 17 17 H 1.09004 * 109.49490 * 181.36250 * 16 2 1 18 18 C 1.52993 * 109.49718 * 61.29538 * 16 2 1 19 19 N 1.46900 * 109.47189 * 175.06264 * 18 16 2 20 20 H 1.09004 * 109.47055 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47254 * 299.97139 * 1 2 3 22 22 H 1.09000 * 109.47156 * 59.97608 * 1 2 3 23 23 H 1.08995 * 109.49945 * 178.60681 * 4 2 1 24 24 H 1.09000 * 109.49821 * 298.67238 * 4 2 1 25 25 H 1.08995 * 109.58579 * 174.42162 * 5 4 2 26 26 H 1.08999 * 109.58843 * 294.70747 * 5 4 2 27 27 H 0.97004 * 119.99297 * 180.02562 * 10 9 7 28 28 H 1.08999 * 109.56150 * 293.79153 * 15 6 5 29 29 H 1.08995 * 109.61436 * 173.35987 * 15 6 5 30 30 H 1.09005 * 109.47292 * 55.06859 * 18 16 2 31 31 H 1.09002 * 109.47505 * 295.06184 * 18 16 2 32 32 H 1.00898 * 111.00126 * 180.02562 * 19 18 16 33 33 H 1.00898 * 111.00009 * 303.95528 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7206 1.2502 5 6 1.4995 -2.1540 1.2645 6 7 1.8626 -2.8089 0.0002 7 6 2.5266 -4.0064 0.0004 8 1 3.1685 -4.2681 -0.8278 9 6 2.3747 -4.8842 1.0651 10 7 1.3614 -4.7447 1.8935 11 14 3.6085 -6.2630 1.3221 12 1 4.7100 -5.7852 2.1959 13 1 2.9325 -7.4186 1.9648 14 1 4.1636 -6.6815 0.0099 15 6 1.5003 -2.1546 -1.2645 16 6 2.0398 -0.7209 -1.2501 17 1 3.1296 -0.7425 -1.2385 18 6 1.5568 0.0191 -2.4990 19 7 2.1427 -0.6029 -3.6939 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5133 0.8902 22 1 -0.3633 0.5142 -0.8898 23 1 3.1295 -0.7426 1.2384 24 1 1.6963 -0.1929 2.1399 25 1 1.9382 -2.7015 2.0987 26 1 0.4148 -2.1347 1.3701 27 1 1.2556 -5.3579 2.6377 28 1 0.4154 -2.1356 -1.3679 29 1 1.9394 -2.7019 -2.0985 30 1 1.8652 1.0632 -2.4447 31 1 0.4697 -0.0363 -2.5566 32 1 1.8390 -0.1315 -4.5327 33 1 3.1498 -0.6220 -3.6347 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253189156.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:56 Heat of formation + Delta-G solvation = -13.821379 kcal Electronic energy + Delta-G solvation = -13549.258707 eV Core-core repulsion = 11415.884060 eV Total energy + Delta-G solvation = -2133.374647 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.10607 -36.19799 -34.70103 -32.66367 -31.09432 -28.47695 -26.74799 -25.43259 -23.36366 -22.18632 -19.57722 -18.31800 -16.98638 -16.72069 -15.95154 -15.66507 -15.60075 -15.01812 -14.57282 -14.24325 -14.01857 -13.25983 -13.16206 -12.88199 -12.67731 -12.44868 -12.27399 -12.15109 -11.83750 -11.66828 -11.37953 -11.01208 -10.93317 -10.48235 -9.45146 -8.60737 -7.84529 -5.28999 1.45745 1.46857 1.56246 2.52414 3.28107 3.68593 3.74523 4.03630 4.09579 4.23377 4.38644 4.61282 4.67739 4.76796 4.80607 4.91953 4.93826 5.01361 5.16410 5.21338 5.24675 5.45486 5.47519 5.59213 5.63763 5.67525 5.85750 6.35048 6.41920 6.73233 7.18373 7.92172 8.43205 9.21062 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.042952 B = 0.011540 C = 0.009868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.738251 B = 2425.821649 C = 2836.868290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.074 4.074 3 H 0.081 0.919 4 C -0.129 4.129 5 C 0.177 3.823 6 N -0.612 5.612 7 C -0.261 4.261 8 H 0.062 0.938 9 C -0.053 4.053 10 N -0.936 5.936 11 Si 0.966 3.034 12 H -0.285 1.285 13 H -0.294 1.294 14 H -0.269 1.269 15 C 0.165 3.835 16 C -0.088 4.088 17 H 0.052 0.948 18 C 0.078 3.922 19 N -0.860 5.860 20 H 0.034 0.966 21 H 0.058 0.942 22 H 0.069 0.931 23 H 0.045 0.955 24 H 0.067 0.933 25 H 0.046 0.954 26 H 0.000 1.000 27 H 0.249 0.751 28 H 0.007 0.993 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.350 0.650 33 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.045 11.477 -6.024 13.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.093 4.093 3 H 0.099 0.901 4 C -0.168 4.168 5 C 0.051 3.949 6 N -0.335 5.335 7 C -0.391 4.391 8 H 0.079 0.921 9 C -0.248 4.248 10 N -0.582 5.582 11 Si 0.795 3.205 12 H -0.212 1.212 13 H -0.221 1.221 14 H -0.194 1.194 15 C 0.040 3.960 16 C -0.108 4.108 17 H 0.070 0.930 18 C -0.053 4.053 19 N -0.391 5.391 20 H 0.053 0.947 21 H 0.077 0.923 22 H 0.088 0.912 23 H 0.064 0.936 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.018 0.982 27 H 0.058 0.942 28 H 0.024 0.976 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.163 0.837 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.595 10.715 -5.695 12.150 hybrid contribution 0.858 -0.233 0.329 0.948 sum 1.454 10.482 -5.367 11.866 Atomic orbital electron populations 1.21874 0.95179 1.01024 1.01916 1.20974 0.96074 0.98458 0.93760 0.90083 1.22064 0.99638 0.97045 0.98050 1.20589 0.95122 0.90420 0.88771 1.44372 1.66884 1.20910 1.01362 1.19526 1.19099 0.94561 1.05955 0.92076 1.25780 0.98884 1.00113 1.00040 1.70204 1.29636 1.39929 1.18455 0.85273 0.78668 0.78571 0.78017 1.21184 1.22052 1.19418 1.20865 0.95403 0.92306 0.87417 1.21507 0.99136 0.95751 0.94435 0.92964 1.21737 0.99574 0.94947 0.89055 1.58599 1.14386 1.61491 1.04635 0.94685 0.92285 0.91238 0.93647 0.91446 0.93584 0.98179 0.94211 0.97555 0.93681 0.94029 0.91140 0.83654 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 8.11 71.98 0.58 -3.81 16 2 C -0.07 -2.37 2.71 -10.77 -0.03 -2.40 16 3 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 4 C -0.13 -5.00 5.63 30.67 0.17 -4.83 16 5 C 0.18 8.89 4.84 86.36 0.42 9.31 16 6 N -0.61 -32.44 3.00 -699.06 -2.09 -34.53 16 7 C -0.26 -15.16 9.58 84.04 0.81 -14.36 16 8 H 0.06 3.51 7.89 -2.91 -0.02 3.48 16 9 C -0.05 -3.10 4.91 84.86 0.42 -2.68 16 10 N -0.94 -57.45 11.19 21.65 0.24 -57.20 16 11 Si 0.97 46.60 29.59 68.60 2.03 48.63 16 12 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 13 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 14 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 15 C 0.17 7.33 5.15 86.36 0.44 7.77 16 16 C -0.09 -3.00 2.25 -10.72 -0.02 -3.02 16 17 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 18 C 0.08 2.04 5.71 86.30 0.49 2.53 16 19 N -0.86 -21.20 9.19 -186.72 -1.72 -22.92 16 20 H 0.03 1.32 4.98 -2.38 -0.01 1.31 16 21 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.07 1.78 6.57 -2.39 -0.02 1.76 16 23 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.05 2.64 6.04 -2.39 -0.01 2.62 16 26 H 0.00 0.01 6.70 -2.39 -0.02 -0.01 16 27 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 28 H 0.01 0.30 6.70 -2.39 -0.02 0.29 16 29 H 0.04 2.08 7.71 -2.39 -0.02 2.07 16 30 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.07 1.87 6.73 -2.39 -0.02 1.85 16 32 H 0.35 6.61 9.08 -89.70 -0.81 5.80 16 33 H 0.34 7.97 8.99 -89.70 -0.81 7.16 16 Total: -1.00 -65.75 251.74 1.22 -64.53 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -0.52 Total: 12.99 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 3.28 Total: -11.49 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -3.57 Total: -114.65 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -65.75 1.22 -64.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253189156.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.705 kcal (2) G-P(sol) polarization free energy of solvation -65.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds