Wall clock time and date at job start Mon Mar 30 2020 02:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46241 * 2 1 4 4 C 1.53039 * 109.46250 * 240.03497 * 2 1 3 5 5 C 1.53182 * 109.31349 * 178.61598 * 4 2 1 6 6 N 1.46924 * 108.77817 * 54.63661 * 5 4 2 7 7 C 1.36944 * 120.63327 * 126.36527 * 6 5 4 8 8 H 1.07999 * 119.99850 * 331.85527 * 7 6 5 9 9 C 1.38809 * 120.00003 * 151.84590 * 7 6 5 10 10 N 1.31626 * 120.00274 * 343.07611 * 9 7 6 11 11 Si 1.86803 * 119.99897 * 163.07887 * 9 7 6 12 12 H 1.48494 * 109.47153 * 90.00051 * 11 9 7 13 13 H 1.48503 * 109.46866 * 210.00069 * 11 9 7 14 14 H 1.48494 * 109.46896 * 329.99740 * 11 9 7 15 15 C 1.46928 * 118.73880 * 306.39084 * 6 5 4 16 16 C 1.53044 * 109.45702 * 119.96736 * 2 1 3 17 17 H 1.08997 * 109.49783 * 61.43744 * 16 2 1 18 18 C 1.53000 * 109.50069 * 301.36980 * 16 2 1 19 19 N 1.46906 * 109.47055 * 175.00080 * 18 16 2 20 20 H 1.09006 * 109.46979 * 300.03065 * 1 2 3 21 21 H 1.08998 * 109.47233 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46778 * 60.03035 * 1 2 3 23 23 H 1.09001 * 109.49297 * 298.57012 * 4 2 1 24 24 H 1.09005 * 109.49343 * 58.66422 * 4 2 1 25 25 H 1.09001 * 109.58559 * 294.85022 * 5 4 2 26 26 H 1.09002 * 109.70359 * 174.49407 * 5 4 2 27 27 H 0.96993 * 119.99865 * 179.97438 * 10 9 7 28 28 H 1.08997 * 109.58650 * 293.82012 * 15 6 5 29 29 H 1.08998 * 109.58743 * 173.39362 * 15 6 5 30 30 H 1.08997 * 109.46907 * 294.99711 * 18 16 2 31 31 H 1.08995 * 109.47185 * 54.99885 * 18 16 2 32 32 H 1.00900 * 110.99508 * 179.97438 * 19 18 16 33 33 H 1.00896 * 110.99806 * 303.95126 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7207 -1.2501 5 6 3.5714 -0.6885 -1.2642 6 7 4.0679 -1.2488 0.0000 7 6 4.9757 -2.2741 0.0000 8 1 5.0033 -2.9710 -0.8246 9 6 5.8607 -2.4175 1.0598 10 7 6.0659 -1.4139 1.8864 11 14 6.7604 -4.0349 1.3129 12 1 8.0449 -4.0086 0.5681 13 1 7.0312 -4.2294 2.7600 14 1 5.9205 -5.1522 0.8119 15 6 3.5714 -0.6886 1.2643 16 6 2.0398 -0.7208 1.2501 17 1 1.6978 -1.7557 1.2383 18 6 1.5021 -0.0195 2.4991 19 7 1.8921 -0.7800 3.6939 20 1 -0.3633 0.5143 0.8898 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5134 -0.8903 23 1 1.6978 -1.7556 -1.2383 24 1 1.6573 -0.2206 -2.1398 25 1 3.9143 0.3410 -1.3672 26 1 3.9438 -1.2829 -2.0985 27 1 6.6839 -1.5143 2.6271 28 1 3.9143 0.3408 1.3675 29 1 3.9416 -1.2846 2.0985 30 1 1.9167 0.9868 2.5575 31 1 0.4150 0.0381 2.4438 32 1 1.5488 -0.3365 4.5327 33 1 1.5744 -1.7357 3.6338 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253189157.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:59 Heat of formation + Delta-G solvation = 5.489065 kcal Electronic energy + Delta-G solvation = -13518.232400 eV Core-core repulsion = 11385.695117 eV Total energy + Delta-G solvation = -2132.537283 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.22105 -34.43458 -33.28486 -30.93748 -29.37587 -27.27746 -24.37310 -23.72696 -21.05666 -20.34756 -18.96187 -16.60108 -15.39912 -14.76384 -14.30990 -13.75933 -13.63462 -13.55069 -12.95735 -12.50080 -12.24887 -11.95102 -11.45708 -11.26529 -10.98186 -10.81574 -10.58631 -10.32415 -10.04203 -9.92529 -9.72280 -9.35574 -9.19893 -8.32761 -8.06620 -6.50672 -5.63844 -3.06714 3.45225 3.51896 3.54397 4.60583 4.99831 5.33288 5.44152 5.49237 5.54664 5.67023 5.83617 5.95929 6.08283 6.12407 6.26411 6.29963 6.37639 6.49218 6.62151 6.68591 6.86921 6.92568 7.06980 7.13791 7.55653 7.67607 7.88256 7.88937 8.04810 8.62291 9.36634 10.00745 10.58090 11.43628 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036897 B = 0.012735 C = 0.010364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.681996 B = 2198.088831 C = 2701.111688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 H 0.061 0.939 4 C -0.126 4.126 5 C 0.143 3.857 6 N -0.595 5.595 7 C -0.255 4.255 8 H 0.062 0.938 9 C 0.005 3.995 10 N -0.895 5.895 11 Si 0.899 3.101 12 H -0.289 1.289 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.187 3.813 16 C -0.104 4.104 17 H 0.058 0.942 18 C 0.071 3.929 19 N -0.842 5.842 20 H 0.050 0.950 21 H 0.048 0.952 22 H 0.045 0.955 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.014 0.986 26 H 0.050 0.950 27 H 0.253 0.747 28 H 0.011 0.989 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.016 0.984 32 H 0.331 0.669 33 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.206 2.197 -0.564 10.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 H 0.079 0.921 4 C -0.166 4.166 5 C 0.017 3.983 6 N -0.317 5.317 7 C -0.385 4.385 8 H 0.079 0.921 9 C -0.194 4.194 10 N -0.539 5.539 11 Si 0.728 3.272 12 H -0.216 1.216 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.061 3.939 16 C -0.125 4.125 17 H 0.077 0.923 18 C -0.060 4.060 19 N -0.370 5.370 20 H 0.069 0.931 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.032 0.968 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.029 0.971 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.142 0.858 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.317 2.359 -0.655 9.634 hybrid contribution -0.574 -0.867 0.328 1.090 sum -9.891 1.493 -0.327 10.008 Atomic orbital electron populations 1.21939 0.96909 1.01021 1.00559 1.21020 0.93678 0.99334 0.95954 0.92094 1.22043 0.98961 0.99687 0.95871 1.20904 0.90976 0.96178 0.90291 1.44123 1.48234 1.39692 0.99677 1.19127 1.09785 1.02973 1.06616 0.92052 1.25025 0.97206 0.97241 0.99968 1.70038 1.37144 1.28858 1.17903 0.86366 0.79625 0.84099 0.77065 1.21568 1.21578 1.20634 1.20734 0.86086 0.97077 0.89987 1.21871 1.01285 0.97950 0.91391 0.92332 1.21868 0.95681 0.97742 0.90688 1.58556 1.68638 1.05969 1.03845 0.93142 0.93299 0.93554 0.92613 0.93418 0.96811 0.93143 0.93722 0.97110 0.88244 0.91752 0.96579 0.85812 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.81 37.16 0.33 -1.75 16 2 C -0.08 -1.41 2.23 -90.57 -0.20 -1.61 16 3 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.13 -2.32 5.36 -26.62 -0.14 -2.46 16 5 C 0.14 3.17 6.52 -3.72 -0.02 3.15 16 6 N -0.59 -15.65 2.99 -172.32 -0.52 -16.16 16 7 C -0.26 -7.31 9.58 -15.06 -0.14 -7.45 16 8 H 0.06 1.73 7.88 -52.49 -0.41 1.31 16 9 C 0.00 0.13 4.92 -17.43 -0.09 0.05 16 10 N -0.90 -27.01 11.20 55.49 0.62 -26.39 16 11 Si 0.90 22.38 29.59 -169.99 -5.03 17.35 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 C 0.19 4.66 4.41 -3.71 -0.02 4.64 16 16 C -0.10 -2.05 2.02 -90.50 -0.18 -2.23 16 17 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 18 C 0.07 1.19 5.93 -3.82 -0.02 1.17 16 19 N -0.84 -13.77 9.20 -10.37 -0.10 -13.86 16 20 H 0.05 0.66 6.29 -51.93 -0.33 0.33 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 27 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.10 2.80 5.84 -51.93 -0.30 2.50 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.02 0.24 6.14 -51.93 -0.32 -0.08 16 32 H 0.33 4.43 9.08 -39.29 -0.36 4.08 16 33 H 0.34 5.22 8.99 -39.29 -0.35 4.87 16 LS Contribution 257.83 15.07 3.89 3.89 Total: -1.00 -30.66 257.83 -7.05 -37.71 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.42 Total: 3.96 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -0.49 Total: -6.50 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.01 Total: -56.42 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.66 -7.05 -37.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253189157.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.201 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds