Wall clock time and date at job start Mon Mar 30 2020 02:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46241 * 2 1 4 4 C 1.53039 * 109.46250 * 240.03497 * 2 1 3 5 5 C 1.53182 * 109.31349 * 178.61598 * 4 2 1 6 6 N 1.46924 * 108.77817 * 54.63661 * 5 4 2 7 7 C 1.36944 * 120.63327 * 126.36527 * 6 5 4 8 8 H 1.07999 * 119.99850 * 331.85527 * 7 6 5 9 9 C 1.38809 * 120.00003 * 151.84590 * 7 6 5 10 10 N 1.31626 * 120.00274 * 343.07611 * 9 7 6 11 11 Si 1.86803 * 119.99897 * 163.07887 * 9 7 6 12 12 H 1.48494 * 109.47153 * 90.00051 * 11 9 7 13 13 H 1.48503 * 109.46866 * 210.00069 * 11 9 7 14 14 H 1.48494 * 109.46896 * 329.99740 * 11 9 7 15 15 C 1.46928 * 118.73880 * 306.39084 * 6 5 4 16 16 C 1.53044 * 109.45702 * 119.96736 * 2 1 3 17 17 H 1.08997 * 109.49783 * 61.43744 * 16 2 1 18 18 C 1.53000 * 109.50069 * 301.36980 * 16 2 1 19 19 N 1.46906 * 109.47055 * 175.00080 * 18 16 2 20 20 H 1.09006 * 109.46979 * 300.03065 * 1 2 3 21 21 H 1.08998 * 109.47233 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46778 * 60.03035 * 1 2 3 23 23 H 1.09001 * 109.49297 * 298.57012 * 4 2 1 24 24 H 1.09005 * 109.49343 * 58.66422 * 4 2 1 25 25 H 1.09001 * 109.58559 * 294.85022 * 5 4 2 26 26 H 1.09002 * 109.70359 * 174.49407 * 5 4 2 27 27 H 0.96993 * 119.99865 * 179.97438 * 10 9 7 28 28 H 1.08997 * 109.58650 * 293.82012 * 15 6 5 29 29 H 1.08998 * 109.58743 * 173.39362 * 15 6 5 30 30 H 1.08997 * 109.46907 * 294.99711 * 18 16 2 31 31 H 1.08995 * 109.47185 * 54.99885 * 18 16 2 32 32 H 1.00900 * 110.99508 * 179.97438 * 19 18 16 33 33 H 1.00896 * 110.99806 * 303.95126 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7207 -1.2501 5 6 3.5714 -0.6885 -1.2642 6 7 4.0679 -1.2488 0.0000 7 6 4.9757 -2.2741 0.0000 8 1 5.0033 -2.9710 -0.8246 9 6 5.8607 -2.4175 1.0598 10 7 6.0659 -1.4139 1.8864 11 14 6.7604 -4.0349 1.3129 12 1 8.0449 -4.0086 0.5681 13 1 7.0312 -4.2294 2.7600 14 1 5.9205 -5.1522 0.8119 15 6 3.5714 -0.6886 1.2643 16 6 2.0398 -0.7208 1.2501 17 1 1.6978 -1.7557 1.2383 18 6 1.5021 -0.0195 2.4991 19 7 1.8921 -0.7800 3.6939 20 1 -0.3633 0.5143 0.8898 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5134 -0.8903 23 1 1.6978 -1.7556 -1.2383 24 1 1.6573 -0.2206 -2.1398 25 1 3.9143 0.3410 -1.3672 26 1 3.9438 -1.2829 -2.0985 27 1 6.6839 -1.5143 2.6271 28 1 3.9143 0.3408 1.3675 29 1 3.9416 -1.2846 2.0985 30 1 1.9167 0.9868 2.5575 31 1 0.4150 0.0381 2.4438 32 1 1.5488 -0.3365 4.5327 33 1 1.5744 -1.7357 3.6338 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253189157.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:58 Heat of formation + Delta-G solvation = -16.045616 kcal Electronic energy + Delta-G solvation = -13519.166214 eV Core-core repulsion = 11385.695117 eV Total energy + Delta-G solvation = -2133.471097 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.84461 -36.16622 -34.88456 -32.85060 -31.03676 -28.94523 -26.14158 -25.42897 -22.69776 -22.01289 -20.58371 -18.65772 -16.99902 -16.48676 -15.82508 -15.54816 -15.39399 -15.08268 -14.58110 -14.00251 -13.83543 -13.55888 -13.07425 -12.88113 -12.69868 -12.48466 -12.43710 -12.18546 -11.83991 -11.66543 -11.43066 -10.99051 -10.91541 -10.46885 -9.36039 -8.61669 -7.81376 -5.28361 1.46013 1.47945 1.57844 2.53542 3.31148 3.69982 3.74977 4.02043 4.10241 4.26641 4.33161 4.58098 4.70320 4.74747 4.78995 4.90936 4.96226 4.97809 5.14173 5.19662 5.27081 5.34751 5.47416 5.59113 5.63255 5.76727 5.97736 6.38303 6.46080 6.74600 7.20318 7.93305 8.44797 9.23333 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.036897 B = 0.012735 C = 0.010364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.681996 B = 2198.088831 C = 2701.111688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.080 4.080 3 H 0.055 0.945 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.616 5.616 7 C -0.269 4.269 8 H 0.062 0.938 9 C -0.049 4.049 10 N -0.929 5.929 11 Si 0.966 3.034 12 H -0.284 1.284 13 H -0.292 1.292 14 H -0.271 1.271 15 C 0.198 3.802 16 C -0.094 4.094 17 H 0.048 0.952 18 C 0.078 3.922 19 N -0.861 5.861 20 H 0.064 0.936 21 H 0.051 0.949 22 H 0.066 0.934 23 H 0.051 0.949 24 H 0.081 0.919 25 H 0.007 0.993 26 H 0.049 0.951 27 H 0.248 0.752 28 H -0.023 1.023 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.348 0.652 33 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.094 1.920 -1.081 12.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.339 5.339 7 C -0.400 4.400 8 H 0.080 0.920 9 C -0.245 4.245 10 N -0.574 5.574 11 Si 0.794 3.206 12 H -0.211 1.211 13 H -0.218 1.218 14 H -0.196 1.196 15 C 0.072 3.928 16 C -0.114 4.114 17 H 0.067 0.933 18 C -0.053 4.053 19 N -0.392 5.392 20 H 0.082 0.918 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.070 0.930 24 H 0.099 0.901 25 H 0.025 0.975 26 H 0.068 0.932 27 H 0.057 0.943 28 H -0.005 1.005 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.161 0.839 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.235 2.088 -1.189 11.489 hybrid contribution 0.054 -0.739 0.445 0.864 sum -11.182 1.349 -0.744 11.287 Atomic orbital electron populations 1.21834 0.93416 1.01815 1.02329 1.21009 0.96481 0.98334 0.94092 0.92611 1.21927 0.95516 1.00135 0.97912 1.21100 0.93961 0.95378 0.88574 1.44436 1.48366 1.39684 1.01405 1.19474 1.10098 1.03709 1.06692 0.92008 1.25810 0.98374 1.00391 0.99878 1.70212 1.38027 1.30796 1.18380 0.85309 0.78445 0.80245 0.76617 1.21093 1.21790 1.19562 1.20469 0.89787 0.93993 0.88537 1.21670 0.97067 0.98269 0.94404 0.93310 1.21761 0.97358 0.96741 0.89405 1.58495 1.69532 1.06540 1.04672 0.91756 0.92944 0.91511 0.92974 0.90079 0.97465 0.93237 0.94251 1.00505 0.91846 0.92550 0.93192 0.83888 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.81 71.98 0.63 -2.66 16 2 C -0.08 -2.61 2.23 -10.76 -0.02 -2.64 16 3 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 4 C -0.12 -4.00 5.36 30.67 0.16 -3.84 16 5 C 0.14 5.98 6.52 86.36 0.56 6.54 16 6 N -0.62 -32.98 2.99 -699.11 -2.09 -35.07 16 7 C -0.27 -15.68 9.58 84.03 0.81 -14.88 16 8 H 0.06 3.51 7.88 -2.91 -0.02 3.48 16 9 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 10 N -0.93 -57.77 11.20 21.65 0.24 -57.53 16 11 Si 0.97 46.72 29.59 68.60 2.03 48.75 16 12 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 13 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 14 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 15 C 0.20 10.12 4.41 86.36 0.38 10.51 16 16 C -0.09 -3.60 2.02 -10.71 -0.02 -3.62 16 17 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 18 C 0.08 2.49 5.93 86.30 0.51 3.00 16 19 N -0.86 -27.46 9.20 -186.71 -1.72 -29.18 16 20 H 0.06 1.38 6.29 -2.38 -0.02 1.37 16 21 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 22 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 25 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 27 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 28 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 29 H 0.06 3.70 5.84 -2.39 -0.01 3.69 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.28 6.14 -2.39 -0.01 1.27 16 32 H 0.35 8.85 9.08 -89.69 -0.81 8.03 16 33 H 0.34 10.28 8.99 -89.70 -0.81 9.47 16 Total: -1.00 -67.37 257.83 1.36 -66.01 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -0.53 Total: 17.04 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 3.43 Total: -10.02 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -3.57 Total: -121.78 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -67.37 1.36 -66.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253189157.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.966 kcal (2) G-P(sol) polarization free energy of solvation -67.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds