Wall clock time and date at job start Mon Mar 30 2020 02:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46799 * 2 1 4 4 N 1.46907 * 109.46906 * 174.66314 * 3 2 1 5 5 C 1.47840 * 110.99817 * 175.25011 * 4 3 2 6 6 C 1.54909 * 104.79274 * 213.63853 * 5 4 3 7 7 C 1.55139 * 101.65576 * 37.06988 * 6 5 4 8 8 H 1.08991 * 110.85849 * 82.80040 * 7 6 5 9 9 N 1.46503 * 110.70824 * 205.96694 * 7 6 5 10 10 C 1.36932 * 119.99975 * 268.60104 * 9 7 6 11 11 H 1.08006 * 119.99918 * 359.97438 * 10 9 7 12 12 C 1.38812 * 120.00198 * 179.97438 * 10 9 7 13 13 N 1.31616 * 120.00204 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 119.99840 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46873 * 90.00194 * 14 12 10 16 16 H 1.48500 * 109.46982 * 210.00136 * 14 12 10 17 17 H 1.48502 * 109.46847 * 330.00137 * 14 12 10 18 18 C 1.47444 * 110.99645 * 54.40567 * 4 3 2 19 19 H 1.08992 * 109.47111 * 299.99459 * 1 2 3 20 20 H 1.09000 * 109.46910 * 60.00203 * 1 2 3 21 21 H 1.09003 * 109.46910 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47148 * 239.99971 * 2 1 3 23 23 H 1.09005 * 109.46621 * 120.00161 * 2 1 3 24 24 H 1.09002 * 109.47179 * 54.66482 * 3 2 1 25 25 H 1.09001 * 109.47192 * 294.66331 * 3 2 1 26 26 H 1.09003 * 110.37569 * 332.46202 * 5 4 3 27 27 H 1.08996 * 110.37446 * 94.81149 * 5 4 3 28 28 H 1.08997 * 110.99143 * 155.16000 * 6 5 4 29 29 H 1.09006 * 110.98895 * 278.97850 * 6 5 4 30 30 H 0.97001 * 119.99620 * 88.59284 * 9 7 6 31 31 H 0.96995 * 120.00307 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.88575 * 242.65942 * 18 4 3 33 33 H 1.08997 * 109.89010 * 3.68499 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5034 1.4445 0.1288 5 6 4.0430 2.8165 0.0188 6 6 5.4156 2.6470 -0.6790 7 6 5.1156 1.5073 -1.6879 8 1 4.6520 1.9015 -2.5921 9 7 6.3383 0.7693 -2.0144 10 6 7.1023 1.1497 -3.0852 11 1 6.8032 1.9936 -3.6894 12 6 8.2611 0.4509 -3.3943 13 7 8.9952 0.8162 -4.4239 14 14 8.7788 -1.0082 -2.3490 15 1 8.1794 -2.2498 -2.9007 16 1 10.2591 -1.1255 -2.3612 17 1 8.3094 -0.8092 -0.9542 18 6 4.1267 0.6097 -0.9145 19 1 -0.3633 0.5137 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.6007 1.9832 0.8384 25 1 1.7568 1.9280 -0.9339 26 1 3.3829 3.4364 -0.5879 27 1 4.1721 3.2540 1.0088 28 1 5.7056 3.5609 -1.1973 29 1 6.1819 2.3448 0.0350 30 1 6.6067 0.0113 -1.4719 31 1 9.8047 0.3277 -4.6401 32 1 4.6619 -0.2208 -0.4542 33 1 3.3616 0.2284 -1.5906 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258512380.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:42 Heat of formation + Delta-G solvation = -10.637706 kcal Electronic energy + Delta-G solvation = -12870.765501 eV Core-core repulsion = 10737.528909 eV Total energy + Delta-G solvation = -2133.236592 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.19204 -36.64762 -34.84345 -33.18568 -30.74523 -29.42887 -26.27985 -24.97416 -22.75251 -21.83690 -21.02533 -19.67749 -17.34853 -16.99578 -16.32501 -15.84345 -15.28138 -14.82885 -14.51662 -14.19721 -13.93311 -13.53072 -13.32256 -13.10348 -12.76451 -12.62846 -12.24462 -12.14764 -12.05990 -11.85317 -11.69887 -11.59144 -11.50025 -10.97701 -9.35115 -9.23875 -8.04716 -5.38734 1.37904 1.40486 1.48093 2.46985 3.00602 3.25590 3.54219 3.86759 3.92990 4.13857 4.23550 4.26537 4.39854 4.46798 4.55443 4.67847 4.78857 4.84008 4.88882 4.96945 5.09780 5.20237 5.23842 5.33208 5.36287 5.43675 5.73263 5.99194 6.18147 6.21626 7.04499 7.80197 8.00101 9.16727 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049144 B = 0.008118 C = 0.007558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.615657 B = 3448.168964 C = 3703.810049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.050 3.950 4 N -0.535 5.535 5 C 0.051 3.949 6 C -0.145 4.145 7 C 0.154 3.846 8 H 0.049 0.951 9 N -0.744 5.744 10 C -0.234 4.234 11 H 0.056 0.944 12 C -0.062 4.062 13 N -0.983 5.983 14 Si 0.955 3.045 15 H -0.276 1.276 16 H -0.295 1.295 17 H -0.254 1.254 18 C 0.042 3.958 19 H 0.063 0.937 20 H 0.054 0.946 21 H 0.061 0.939 22 H 0.054 0.946 23 H 0.066 0.934 24 H 0.087 0.913 25 H 0.032 0.968 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.367 0.633 31 H 0.259 0.741 32 H 0.069 0.931 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.744 -0.317 11.397 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.078 4.078 4 N -0.259 5.259 5 C -0.076 4.076 6 C -0.186 4.186 7 C 0.044 3.956 8 H 0.068 0.932 9 N -0.387 5.387 10 C -0.365 4.365 11 H 0.074 0.926 12 C -0.253 4.253 13 N -0.633 5.633 14 Si 0.782 3.218 15 H -0.202 1.202 16 H -0.221 1.221 17 H -0.178 1.178 18 C -0.086 4.086 19 H 0.082 0.918 20 H 0.073 0.927 21 H 0.080 0.920 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.105 0.895 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.200 0.800 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.585 -0.404 11.700 19.492 hybrid contribution 0.718 -0.360 -0.762 1.107 sum -14.867 -0.764 10.938 18.473 Atomic orbital electron populations 1.21695 0.94085 1.02287 1.02214 1.21629 0.96816 0.95759 1.02117 1.22414 0.86771 0.97944 1.00691 1.63696 1.06103 1.10008 1.46117 1.22972 0.94275 0.89616 1.00781 1.23241 0.97309 0.99449 0.98592 1.21615 0.86472 0.92070 0.95432 0.93246 1.42672 1.26075 1.36391 1.33542 1.19029 1.02759 1.10988 1.03726 0.92640 1.25490 0.97693 1.02648 0.99482 1.69878 1.17675 1.44423 1.31373 0.85405 0.76949 0.79742 0.79659 1.20243 1.22137 1.17831 1.22985 0.96695 0.96470 0.92489 0.91807 0.92677 0.91997 0.92721 0.91571 0.89513 0.94982 0.92780 0.89131 0.92088 0.92042 0.79967 0.93262 0.91309 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.91 71.98 0.71 -1.53 16 2 C -0.13 -2.52 5.58 30.60 0.17 -2.35 16 3 C 0.05 1.09 4.85 86.30 0.42 1.51 16 4 N -0.53 -14.72 5.28 -885.53 -4.67 -19.39 16 5 C 0.05 1.38 6.73 86.77 0.58 1.96 16 6 C -0.15 -5.03 6.76 31.98 0.22 -4.81 16 7 C 0.15 6.00 3.61 46.17 0.17 6.17 16 8 H 0.05 2.04 8.09 -2.39 -0.02 2.02 16 9 N -0.74 -35.50 5.03 -317.37 -1.59 -37.09 16 10 C -0.23 -13.55 10.44 84.03 0.88 -12.67 16 11 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16 12 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 13 N -0.98 -63.59 13.97 21.65 0.30 -63.29 16 14 Si 0.96 46.05 27.74 68.60 1.90 47.95 16 15 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 16 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 17 H -0.25 -11.17 6.52 99.48 0.65 -10.52 16 18 C 0.04 1.35 5.94 86.65 0.52 1.87 16 19 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 20 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 21 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.05 1.21 6.37 -2.39 -0.02 1.19 16 23 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 24 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.03 0.71 7.97 -2.39 -0.02 0.69 16 26 H 0.05 1.33 7.70 -2.39 -0.02 1.31 16 27 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.37 16.85 5.43 -92.71 -0.50 16.35 16 31 H 0.26 15.90 8.31 -92.71 -0.77 15.12 16 32 H 0.07 2.29 7.72 -2.39 -0.02 2.27 16 33 H 0.07 1.96 5.96 -2.39 -0.01 1.95 16 Total: -1.00 -65.40 262.80 0.57 -64.83 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.51 Total: 20.06 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 4.13 Total: -13.06 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -5.97 Total: -119.78 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.90 Total: 47.95 kcal Total: -65.40 0.57 -64.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258512380.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.195 kcal (2) G-P(sol) polarization free energy of solvation -65.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds