Wall clock time and date at job start Mon Mar 30 2020 02:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47485 * 2 1 4 4 H 1.08998 * 109.90182 * 305.97383 * 3 2 1 5 5 C 1.53985 * 109.91899 * 184.87143 * 3 2 1 6 6 H 1.08998 * 110.31394 * 120.50574 * 5 3 2 7 7 N 1.46907 * 110.31299 * 358.33544 * 5 3 2 8 8 C 1.54605 * 105.13995 * 239.42147 * 5 3 2 9 9 H 1.09001 * 110.72350 * 96.39890 * 8 5 3 10 10 C 1.50695 * 110.72482 * 219.50860 * 8 5 3 11 11 H 1.08001 * 119.99829 * 357.54309 * 10 8 5 12 12 C 1.37871 * 119.99947 * 177.55239 * 10 8 5 13 13 N 1.31519 * 120.00033 * 359.97438 * 12 10 8 14 14 Si 1.86807 * 120.00298 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46615 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47257 * 119.99459 * 14 12 10 17 17 H 1.48500 * 109.47102 * 239.99950 * 14 12 10 18 18 C 1.54936 * 103.08034 * 337.95613 * 8 5 3 19 19 N 1.47901 * 109.91677 * 67.27848 * 3 2 1 20 20 C 1.46899 * 110.99978 * 265.20023 * 19 3 2 21 21 H 1.08998 * 109.47623 * 172.87407 * 1 2 3 22 22 H 1.09006 * 109.47351 * 292.87722 * 1 2 3 23 23 H 1.09003 * 109.47088 * 52.87172 * 1 2 3 24 24 H 1.09005 * 109.47370 * 240.00109 * 2 1 3 25 25 H 1.09003 * 109.47279 * 119.99844 * 2 1 3 26 26 H 1.00893 * 110.99922 * 182.82992 * 7 5 3 27 27 H 1.00898 * 110.99248 * 306.79048 * 7 5 3 28 28 H 0.97005 * 119.99922 * 180.02562 * 13 12 10 29 29 H 1.09001 * 110.66869 * 155.93748 * 18 8 5 30 30 H 1.09002 * 110.66351 * 279.06618 * 18 8 5 31 31 H 1.09006 * 109.47614 * 65.86245 * 20 19 3 32 32 H 1.09000 * 109.46922 * 185.85921 * 20 19 3 33 33 H 1.08991 * 109.47361 * 305.86085 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5961 1.9930 -0.8294 5 6 3.5749 1.4562 -0.1229 6 1 3.8782 2.0031 -1.0157 7 7 4.0955 0.0830 -0.1636 8 6 4.0753 2.1823 1.1470 9 1 4.3545 1.4636 1.9175 10 6 5.2339 3.0891 0.8212 11 1 5.6231 3.1275 -0.1855 12 6 5.7972 3.8695 1.8084 13 7 5.3230 3.8230 3.0342 14 14 7.2339 4.9932 1.4048 15 1 7.5762 4.8615 -0.0342 16 1 6.8598 6.4000 1.6984 17 1 8.4082 4.6108 2.2295 18 6 2.8405 3.0074 1.5886 19 7 1.7016 2.0966 1.2826 20 6 0.4429 2.8463 1.1753 21 1 -0.3634 -1.0197 -0.1275 22 1 -0.3634 0.3995 0.9469 23 1 -0.3633 0.6203 -0.8194 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.1039 0.0795 -0.1977 27 1 3.7582 -0.4548 0.6206 28 1 5.7191 4.3724 3.7287 29 1 2.8861 3.2272 2.6552 30 1 2.7647 3.9269 1.0081 31 1 -0.3808 2.1518 1.0099 32 1 0.2707 3.4011 2.0976 33 1 0.5048 3.5423 0.3388 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259855015.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:18 Heat of formation + Delta-G solvation = -21.600683 kcal Electronic energy + Delta-G solvation = -13482.499080 eV Core-core repulsion = 11348.787098 eV Total energy + Delta-G solvation = -2133.711983 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.37254 -35.46986 -34.78334 -33.47089 -30.55847 -28.43625 -26.96924 -25.06257 -23.37358 -21.66272 -20.17788 -18.73111 -16.97781 -16.62512 -16.15409 -15.95591 -15.29037 -14.67757 -14.25027 -14.05117 -13.91318 -13.38828 -12.96447 -12.92710 -12.78629 -12.70196 -12.59984 -12.13359 -11.97770 -11.52284 -11.33458 -11.23452 -10.93137 -10.58302 -9.34766 -9.20342 -8.17524 -6.29331 1.36835 1.39448 1.50329 2.38556 3.10570 3.29698 3.82539 3.98442 4.24896 4.30221 4.42254 4.54109 4.62418 4.71056 4.76395 4.79511 4.92918 5.01952 5.15035 5.26872 5.29882 5.43984 5.50417 5.60373 5.64267 5.80123 6.04940 6.29275 6.34313 6.42445 6.71332 6.84641 7.39272 8.90413 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051341 B = 0.010716 C = 0.009511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.243341 B = 2612.203209 C = 2943.211823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C 0.071 3.929 4 H 0.044 0.956 5 C 0.089 3.911 6 H 0.061 0.939 7 N -0.826 5.826 8 C 0.023 3.977 9 H 0.005 0.995 10 C -0.533 4.533 11 H 0.053 0.947 12 C 0.015 3.985 13 N -0.915 5.915 14 Si 0.955 3.045 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.280 1.280 18 C 0.069 3.931 19 N -0.529 5.529 20 C 0.013 3.987 21 H 0.064 0.936 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.076 0.924 25 H 0.055 0.945 26 H 0.338 0.662 27 H 0.339 0.661 28 H 0.261 0.739 29 H 0.052 0.948 30 H 0.010 0.990 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.164 -4.518 -4.868 9.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.037 4.037 4 H 0.062 0.938 5 C -0.023 4.023 6 H 0.079 0.921 7 N -0.354 5.354 8 C 0.002 3.998 9 H 0.024 0.976 10 C -0.571 4.571 11 H 0.071 0.929 12 C -0.184 4.184 13 N -0.554 5.554 14 Si 0.780 3.220 15 H -0.191 1.191 16 H -0.208 1.208 17 H -0.206 1.206 18 C -0.060 4.060 19 N -0.253 5.253 20 C -0.135 4.135 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.150 0.850 27 H 0.153 0.847 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -7.630 -4.902 -4.989 10.351 hybrid contribution 1.481 1.910 0.534 2.475 sum -6.149 -2.992 -4.455 8.162 Atomic orbital electron populations 1.21856 0.95340 1.01813 1.01392 1.21244 0.95715 0.93700 1.01981 1.22491 0.94171 0.97018 0.90057 0.93838 1.22289 0.93584 0.89347 0.97105 0.92114 1.59215 1.14329 1.11990 1.49869 1.20193 0.92388 0.94111 0.93083 0.97641 1.21470 1.16041 1.24272 0.95349 0.92851 1.25775 0.99435 0.98316 0.94899 1.70094 1.42570 1.40825 1.01934 0.85557 0.79367 0.78570 0.78475 1.19125 1.20768 1.20560 1.22988 0.90810 0.93150 0.99013 1.64878 1.02782 1.28063 1.29614 1.22678 0.93061 0.97595 1.00174 0.91698 0.92737 0.93036 0.90508 0.92627 0.85045 0.84725 0.92977 0.92967 0.97209 0.89099 0.92189 0.96253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 8.79 71.98 0.63 -2.97 16 2 C -0.09 -2.64 4.49 30.59 0.14 -2.50 16 3 C 0.07 2.60 2.59 45.06 0.12 2.72 16 4 H 0.04 1.56 7.65 -2.39 -0.02 1.54 16 5 C 0.09 3.69 3.69 45.79 0.17 3.86 16 6 H 0.06 2.66 7.68 -2.39 -0.02 2.64 16 7 N -0.83 -29.32 8.04 -165.02 -1.33 -30.64 16 8 C 0.02 1.15 2.63 -10.33 -0.03 1.12 16 9 H 0.01 0.30 8.06 -2.39 -0.02 0.29 16 10 C -0.53 -29.09 8.49 25.60 0.22 -28.87 16 11 H 0.05 2.88 7.57 -2.91 -0.02 2.86 16 12 C 0.02 0.85 5.35 84.65 0.45 1.30 16 13 N -0.92 -53.02 12.22 21.45 0.26 -52.76 16 14 Si 0.95 43.49 29.54 68.60 2.03 45.51 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 18 C 0.07 3.34 5.40 86.56 0.47 3.80 16 19 N -0.53 -20.92 5.07 -882.78 -4.48 -25.40 16 20 C 0.01 0.44 9.10 127.69 1.16 1.60 16 21 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.05 1.39 6.21 -2.38 -0.01 1.38 16 23 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.08 2.23 7.64 -2.38 -0.02 2.21 16 25 H 0.06 1.76 7.01 -2.39 -0.02 1.74 16 26 H 0.34 12.05 9.06 -89.70 -0.81 11.24 16 27 H 0.34 11.59 7.18 -89.70 -0.64 10.95 16 28 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 29 H 0.05 2.83 7.52 -2.39 -0.02 2.82 16 30 H 0.01 0.49 7.93 -2.39 -0.02 0.47 16 31 H 0.09 2.47 5.40 -2.38 -0.01 2.46 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.02 0.62 7.94 -2.39 -0.02 0.60 16 Total: -1.00 -58.29 256.28 -0.55 -58.84 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -0.36 Total: 24.39 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 3.33 Total: -19.95 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -5.54 Total: -108.80 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -58.29 -0.55 -58.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259855015.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.243 kcal (2) G-P(sol) polarization free energy of solvation -58.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds