Wall clock time and date at job start Mon Mar 30 2020 02:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47277 * 2 1 4 4 H 1.08997 * 109.88406 * 56.57237 * 3 2 1 5 5 C 1.54322 * 109.88476 * 295.53993 * 3 2 1 6 6 H 1.09002 * 110.70391 * 99.93254 * 5 3 2 7 7 N 1.46890 * 110.85897 * 336.76538 * 5 3 2 8 8 C 1.55144 * 103.01811 * 218.31009 * 5 3 2 9 9 H 1.09000 * 110.99175 * 277.52308 * 8 5 3 10 10 C 1.50699 * 110.98792 * 153.74929 * 8 5 3 11 11 H 1.07999 * 120.00098 * 3.14512 * 10 8 5 12 12 C 1.37883 * 119.99864 * 183.14635 * 10 8 5 13 13 N 1.31514 * 119.99970 * 179.97438 * 12 10 8 14 14 Si 1.86796 * 119.99657 * 359.97438 * 12 10 8 15 15 H 1.48499 * 109.47453 * 90.00322 * 14 12 10 16 16 H 1.48508 * 109.46861 * 209.99702 * 14 12 10 17 17 H 1.48501 * 109.47685 * 329.99872 * 14 12 10 18 18 C 1.54905 * 101.68765 * 35.63925 * 8 5 3 19 19 N 1.47443 * 109.88828 * 177.77481 * 3 2 1 20 20 C 1.46904 * 110.99896 * 356.14487 * 19 3 2 21 21 H 1.09002 * 109.46803 * 65.58309 * 1 2 3 22 22 H 1.08994 * 109.47579 * 185.58030 * 1 2 3 23 23 H 1.08999 * 109.47260 * 305.58763 * 1 2 3 24 24 H 1.09004 * 109.47002 * 239.99343 * 2 1 3 25 25 H 1.09001 * 109.46977 * 119.99907 * 2 1 3 26 26 H 1.00903 * 111.00250 * 184.86131 * 7 5 3 27 27 H 1.00905 * 111.00177 * 308.81221 * 7 5 3 28 28 H 0.97002 * 119.99716 * 180.02562 * 13 12 10 29 29 H 1.09000 * 110.37449 * 81.77563 * 18 8 5 30 30 H 1.09001 * 110.37245 * 204.12034 * 18 8 5 31 31 H 1.09000 * 109.47151 * 59.28538 * 20 19 3 32 32 H 1.09003 * 109.46709 * 179.28017 * 20 19 3 33 33 H 1.08993 * 109.47145 * 299.28052 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6313 1.9802 0.8554 5 6 1.6251 2.1459 -1.3094 6 1 0.7466 2.7710 -1.1494 7 7 1.3754 1.1648 -2.3737 8 6 2.8641 3.0169 -1.6459 9 1 2.8464 3.9532 -1.0880 10 6 2.9550 3.2765 -3.1276 11 1 2.1822 2.9121 -3.7881 12 6 4.0250 3.9792 -3.6400 13 7 4.1046 4.2053 -4.9331 14 14 5.3613 4.6101 -2.4974 15 1 6.4224 3.5802 -2.3604 16 1 5.9477 5.8530 -3.0602 17 1 4.7764 4.8987 -1.1632 18 6 4.0250 2.1087 -1.1694 19 7 3.5134 1.4535 0.0538 20 6 4.0457 0.0904 0.1833 21 1 -0.3633 0.4248 -0.9358 22 1 -0.3634 -1.0227 0.0999 23 1 -0.3634 0.5980 0.8357 24 1 1.8933 -0.5140 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.1813 1.6243 -3.2508 27 1 2.1501 0.5247 -2.4646 28 1 4.8576 4.6994 -5.2936 29 1 4.2599 1.3631 -1.9290 30 1 4.9059 2.7081 -0.9395 31 1 3.7212 -0.5087 -0.6675 32 1 5.1349 0.1265 0.2079 33 1 3.6761 -0.3579 1.1054 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259855021.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:23 Heat of formation + Delta-G solvation = 11.388444 kcal Electronic energy + Delta-G solvation = -13742.445286 eV Core-core repulsion = 11610.163819 eV Total energy + Delta-G solvation = -2132.281467 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.36622 -33.82228 -33.04410 -31.85586 -29.15157 -27.16678 -25.51631 -23.36148 -22.43300 -19.71636 -18.38346 -16.73229 -16.26972 -15.05074 -14.66479 -13.88430 -13.69839 -13.58580 -13.13447 -12.79539 -12.61996 -12.01299 -11.58443 -11.23956 -11.20714 -10.92329 -10.73469 -10.46704 -10.38381 -10.03832 -9.82556 -9.66462 -9.16529 -8.66032 -7.75309 -7.67976 -6.17774 -4.19294 3.23877 3.33814 3.39138 4.34444 4.62474 5.09875 5.20128 5.38231 5.61156 5.64211 5.67002 5.82275 5.89021 6.01896 6.08426 6.15371 6.28263 6.29324 6.38004 6.48971 6.59773 6.79228 6.79894 6.92786 7.28446 7.49318 7.64943 7.69539 8.02977 8.22218 8.40971 8.83528 9.44550 10.93948 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046093 B = 0.013254 C = 0.011311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.320453 B = 2112.091777 C = 2474.892257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C 0.073 3.927 4 H 0.076 0.924 5 C 0.086 3.914 6 H 0.075 0.925 7 N -0.829 5.829 8 C -0.024 4.024 9 H 0.040 0.960 10 C -0.517 4.517 11 H 0.079 0.921 12 C 0.075 3.925 13 N -0.897 5.897 14 Si 0.879 3.121 15 H -0.279 1.279 16 H -0.293 1.293 17 H -0.261 1.261 18 C 0.036 3.964 19 N -0.539 5.539 20 C 0.020 3.980 21 H 0.078 0.922 22 H 0.039 0.961 23 H 0.040 0.960 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.347 0.653 27 H 0.328 0.672 28 H 0.265 0.735 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.029 0.971 32 H 0.055 0.945 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.579 -6.727 8.550 11.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.035 4.035 4 H 0.094 0.906 5 C -0.027 4.027 6 H 0.094 0.906 7 N -0.358 5.358 8 C -0.045 4.045 9 H 0.059 0.941 10 C -0.555 4.555 11 H 0.097 0.903 12 C -0.128 4.128 13 N -0.534 5.534 14 Si 0.707 3.293 15 H -0.205 1.205 16 H -0.220 1.220 17 H -0.186 1.186 18 C -0.092 4.092 19 N -0.262 5.262 20 C -0.129 4.129 21 H 0.096 0.904 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.163 0.837 27 H 0.139 0.861 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.931 -6.593 9.278 11.753 hybrid contribution 1.631 0.391 -0.639 1.795 sum -1.300 -6.202 8.638 10.713 Atomic orbital electron populations 1.21711 0.95631 1.00154 1.02683 1.21833 0.96587 0.96768 1.00834 1.22563 0.87502 0.95669 0.97798 0.90593 1.22397 0.97540 0.92296 0.90432 0.90649 1.59405 1.45096 1.20561 1.10784 1.20938 0.91495 0.94625 0.97467 0.94143 1.20866 1.08807 1.36005 0.89844 0.90307 1.24985 0.97877 0.95087 0.94802 1.69895 1.31204 1.40605 1.11686 0.86912 0.82291 0.78312 0.81736 1.20472 1.21968 1.18603 1.23557 0.99619 0.97431 0.88548 1.63725 1.06501 1.16853 1.39147 1.22516 0.99559 0.90545 1.00264 0.90356 0.94178 0.94078 0.91323 0.93141 0.83676 0.86062 0.92551 0.93719 0.92442 0.95268 0.92605 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.57 37.16 0.36 -1.63 16 2 C -0.12 -1.82 3.75 -26.73 -0.10 -1.92 16 3 C 0.07 1.27 3.41 -66.72 -0.23 1.05 16 4 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 5 C 0.09 1.67 3.21 -65.89 -0.21 1.46 16 6 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 7 N -0.83 -15.17 6.70 -3.12 -0.02 -15.19 16 8 C -0.02 -0.55 2.31 -89.63 -0.21 -0.76 16 9 H 0.04 0.99 7.20 -51.93 -0.37 0.61 16 10 C -0.52 -13.64 8.67 -34.44 -0.30 -13.94 16 11 H 0.08 2.18 6.03 -52.49 -0.32 1.87 16 12 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16 13 N -0.90 -26.57 13.96 55.43 0.77 -25.80 16 14 Si 0.88 21.61 24.66 -169.99 -4.19 17.42 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 H -0.26 -6.31 6.50 56.52 0.37 -5.95 16 18 C 0.04 0.77 4.85 -2.27 -0.01 0.76 16 19 N -0.54 -10.10 5.44 -231.52 -1.26 -11.36 16 20 C 0.02 0.31 8.27 60.07 0.50 0.81 16 21 H 0.08 1.18 6.64 -51.93 -0.34 0.84 16 22 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 1.07 5.16 -51.93 -0.27 0.80 16 25 H 0.05 0.70 6.46 -51.93 -0.34 0.37 16 26 H 0.35 6.88 6.80 -39.29 -0.27 6.62 16 27 H 0.33 6.11 7.25 -39.29 -0.28 5.83 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 29 H 0.04 0.99 7.48 -51.93 -0.39 0.61 16 30 H 0.06 1.31 5.28 -51.93 -0.27 1.04 16 31 H 0.03 0.45 6.51 -51.93 -0.34 0.11 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.87 6.71 -51.93 -0.35 0.52 16 LS Contribution 241.52 15.07 3.64 3.64 Total: -1.00 -27.57 241.52 -6.18 -33.75 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -4.82 Total: 9.71 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -0.30 Total: -12.18 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.51 Total: -52.35 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.19 Total: 17.42 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -27.57 -6.18 -33.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259855021.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.142 kcal (2) G-P(sol) polarization free energy of solvation -27.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds