Wall clock time and date at job start Mon Mar 30 2020 02:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47277 * 2 1 4 4 H 1.08997 * 109.88406 * 56.57237 * 3 2 1 5 5 C 1.54322 * 109.88476 * 295.53993 * 3 2 1 6 6 H 1.09002 * 110.70391 * 99.93254 * 5 3 2 7 7 N 1.46890 * 110.85897 * 336.76538 * 5 3 2 8 8 C 1.55144 * 103.01811 * 218.31009 * 5 3 2 9 9 H 1.09000 * 110.99175 * 277.52308 * 8 5 3 10 10 C 1.50699 * 110.98792 * 153.74929 * 8 5 3 11 11 H 1.07999 * 120.00098 * 3.14512 * 10 8 5 12 12 C 1.37883 * 119.99864 * 183.14635 * 10 8 5 13 13 N 1.31514 * 119.99970 * 179.97438 * 12 10 8 14 14 Si 1.86796 * 119.99657 * 359.97438 * 12 10 8 15 15 H 1.48499 * 109.47453 * 90.00322 * 14 12 10 16 16 H 1.48508 * 109.46861 * 209.99702 * 14 12 10 17 17 H 1.48501 * 109.47685 * 329.99872 * 14 12 10 18 18 C 1.54905 * 101.68765 * 35.63925 * 8 5 3 19 19 N 1.47443 * 109.88828 * 177.77481 * 3 2 1 20 20 C 1.46904 * 110.99896 * 356.14487 * 19 3 2 21 21 H 1.09002 * 109.46803 * 65.58309 * 1 2 3 22 22 H 1.08994 * 109.47579 * 185.58030 * 1 2 3 23 23 H 1.08999 * 109.47260 * 305.58763 * 1 2 3 24 24 H 1.09004 * 109.47002 * 239.99343 * 2 1 3 25 25 H 1.09001 * 109.46977 * 119.99907 * 2 1 3 26 26 H 1.00903 * 111.00250 * 184.86131 * 7 5 3 27 27 H 1.00905 * 111.00177 * 308.81221 * 7 5 3 28 28 H 0.97002 * 119.99716 * 180.02562 * 13 12 10 29 29 H 1.09000 * 110.37449 * 81.77563 * 18 8 5 30 30 H 1.09001 * 110.37245 * 204.12034 * 18 8 5 31 31 H 1.09000 * 109.47151 * 59.28538 * 20 19 3 32 32 H 1.09003 * 109.46709 * 179.28017 * 20 19 3 33 33 H 1.08993 * 109.47145 * 299.28052 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6313 1.9802 0.8554 5 6 1.6251 2.1459 -1.3094 6 1 0.7466 2.7710 -1.1494 7 7 1.3754 1.1648 -2.3737 8 6 2.8641 3.0169 -1.6459 9 1 2.8464 3.9532 -1.0880 10 6 2.9550 3.2765 -3.1276 11 1 2.1822 2.9121 -3.7881 12 6 4.0250 3.9792 -3.6400 13 7 4.1046 4.2053 -4.9331 14 14 5.3613 4.6101 -2.4974 15 1 6.4224 3.5802 -2.3604 16 1 5.9477 5.8530 -3.0602 17 1 4.7764 4.8987 -1.1632 18 6 4.0250 2.1087 -1.1694 19 7 3.5134 1.4535 0.0538 20 6 4.0457 0.0904 0.1833 21 1 -0.3633 0.4248 -0.9358 22 1 -0.3634 -1.0227 0.0999 23 1 -0.3634 0.5980 0.8357 24 1 1.8933 -0.5140 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.1813 1.6243 -3.2508 27 1 2.1501 0.5247 -2.4646 28 1 4.8576 4.6994 -5.2936 29 1 4.2599 1.3631 -1.9290 30 1 4.9059 2.7081 -0.9395 31 1 3.7212 -0.5087 -0.6675 32 1 5.1349 0.1265 0.2079 33 1 3.6761 -0.3579 1.1054 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259855021.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:23 Heat of formation + Delta-G solvation = -9.796309 kcal Electronic energy + Delta-G solvation = -13743.363925 eV Core-core repulsion = 11610.163819 eV Total energy + Delta-G solvation = -2133.200106 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.88711 -35.57412 -34.49890 -33.64964 -30.73326 -28.65983 -27.16749 -24.99689 -23.79297 -21.47953 -19.81148 -18.73336 -17.79601 -16.78014 -16.18673 -15.60579 -15.25562 -15.00027 -14.77598 -14.56371 -14.01479 -13.32003 -13.08977 -13.03610 -12.76953 -12.37006 -12.25859 -12.00276 -11.96426 -11.64780 -11.46617 -11.27043 -11.05765 -10.77054 -9.34461 -9.15454 -8.33325 -6.36691 1.27215 1.32882 1.42678 2.29140 3.00721 3.16906 3.71064 4.02944 4.11376 4.23526 4.41045 4.43951 4.54826 4.65446 4.71686 4.77008 4.79800 4.95987 5.01066 5.13798 5.18966 5.28347 5.41329 5.55951 5.58035 5.72839 6.04563 6.17388 6.30136 6.41080 6.64068 6.76046 7.29754 8.81206 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046093 B = 0.013254 C = 0.011311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.320453 B = 2112.091777 C = 2474.892257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 C 0.076 3.924 4 H 0.084 0.916 5 C 0.091 3.909 6 H 0.075 0.925 7 N -0.812 5.812 8 C -0.032 4.032 9 H 0.027 0.973 10 C -0.508 4.508 11 H 0.057 0.943 12 C 0.023 3.977 13 N -0.941 5.941 14 Si 0.933 3.067 15 H -0.271 1.271 16 H -0.295 1.295 17 H -0.255 1.255 18 C 0.046 3.954 19 N -0.544 5.544 20 C 0.018 3.982 21 H 0.061 0.939 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.338 0.662 27 H 0.328 0.672 28 H 0.265 0.735 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.032 0.968 32 H 0.059 0.941 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.659 -7.916 10.601 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.032 4.032 4 H 0.102 0.898 5 C -0.023 4.023 6 H 0.093 0.907 7 N -0.341 5.341 8 C -0.053 4.053 9 H 0.045 0.955 10 C -0.547 4.547 11 H 0.075 0.925 12 C -0.176 4.176 13 N -0.581 5.581 14 Si 0.760 3.240 15 H -0.197 1.197 16 H -0.222 1.222 17 H -0.179 1.179 18 C -0.082 4.082 19 N -0.268 5.268 20 C -0.130 4.130 21 H 0.080 0.920 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.152 0.848 27 H 0.139 0.861 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.021 -7.804 11.356 14.106 hybrid contribution 1.575 0.728 -1.278 2.155 sum -1.446 -7.076 10.077 12.398 Atomic orbital electron populations 1.21660 0.94723 1.01279 1.02147 1.21776 0.97273 0.94824 1.01386 1.22601 0.86801 0.97302 0.96517 0.89818 1.22394 0.95962 0.92159 0.91774 0.90655 1.59419 1.44712 1.19875 1.10045 1.20910 0.94429 0.95104 0.94850 0.95507 1.21141 1.07528 1.34442 0.91594 0.92454 1.25698 1.00204 0.95824 0.95852 1.70015 1.32274 1.42414 1.13427 0.86030 0.80045 0.77740 0.80153 1.19688 1.22167 1.17898 1.23254 0.98464 0.96941 0.89563 1.63700 1.07262 1.18802 1.37048 1.22622 0.99897 0.88885 1.01625 0.92018 0.92525 0.93237 0.92017 0.91237 0.84766 0.86093 0.92614 0.94777 0.93593 0.94943 0.92236 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.57 71.98 0.69 -2.73 16 2 C -0.11 -3.01 3.75 30.59 0.11 -2.90 16 3 C 0.08 2.44 3.41 45.26 0.15 2.60 16 4 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 5 C 0.09 3.38 3.21 46.10 0.15 3.53 16 6 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 7 N -0.81 -29.06 6.70 -163.80 -1.10 -30.16 16 8 C -0.03 -1.43 2.31 -10.15 -0.02 -1.45 16 9 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 10 C -0.51 -27.13 8.67 25.60 0.22 -26.91 16 11 H 0.06 3.26 6.03 -2.91 -0.02 3.24 16 12 C 0.02 1.27 5.46 84.66 0.46 1.73 16 13 N -0.94 -56.96 13.96 21.45 0.30 -56.66 16 14 Si 0.93 44.76 24.66 68.60 1.69 46.45 16 15 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 16 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 17 H -0.25 -11.81 6.50 99.48 0.65 -11.17 16 18 C 0.05 1.91 4.85 86.76 0.42 2.33 16 19 N -0.54 -18.98 5.44 -886.40 -4.82 -23.81 16 20 C 0.02 0.50 8.27 127.69 1.06 1.56 16 21 H 0.06 1.72 6.64 -2.39 -0.02 1.70 16 22 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.06 1.74 5.16 -2.38 -0.01 1.72 16 25 H 0.07 1.61 6.46 -2.39 -0.02 1.59 16 26 H 0.34 13.44 6.80 -89.69 -0.61 12.83 16 27 H 0.33 11.87 7.25 -89.69 -0.65 11.22 16 28 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 29 H 0.03 1.48 7.48 -2.39 -0.02 1.47 16 30 H 0.05 2.03 5.28 -2.39 -0.01 2.01 16 31 H 0.03 0.90 6.51 -2.39 -0.02 0.88 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.09 2.05 6.71 -2.39 -0.02 2.03 16 Total: -1.00 -58.30 241.52 -0.89 -59.19 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: -0.21 Total: 27.24 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 3.24 Total: -22.25 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -5.62 Total: -110.63 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.69 Total: 46.45 kcal Total: -58.30 -0.89 -59.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259855021.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.394 kcal (2) G-P(sol) polarization free energy of solvation -58.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds