Wall clock time and date at job start Mon Mar 30 2020 02:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47208 * 2 1 4 4 H 1.08994 * 110.06859 * 303.98873 * 3 2 1 5 5 C 1.54000 * 109.91348 * 182.78493 * 3 2 1 6 6 H 1.08996 * 110.31131 * 358.33849 * 5 3 2 7 7 N 1.46898 * 110.30878 * 120.50882 * 5 3 2 8 8 C 1.54598 * 105.13838 * 239.42229 * 5 3 2 9 9 H 1.08997 * 110.72568 * 96.58216 * 8 5 3 10 10 C 1.50701 * 110.72060 * 219.68509 * 8 5 3 11 11 H 1.08004 * 120.00109 * 84.87534 * 10 8 5 12 12 C 1.37874 * 120.00375 * 265.14138 * 10 8 5 13 13 N 1.31523 * 119.99650 * 359.72853 * 12 10 8 14 14 Si 1.86798 * 120.00582 * 179.72512 * 12 10 8 15 15 H 1.48506 * 109.46858 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46951 * 120.00022 * 14 12 10 17 17 H 1.48494 * 109.47528 * 240.00408 * 14 12 10 18 18 C 1.54940 * 102.92281 * 338.04003 * 8 5 3 19 19 N 1.47898 * 109.91874 * 65.19737 * 3 2 1 20 20 C 1.46898 * 110.99904 * 265.19369 * 19 3 2 21 21 H 1.09001 * 109.46861 * 52.35420 * 1 2 3 22 22 H 1.08996 * 109.47802 * 172.35750 * 1 2 3 23 23 H 1.09001 * 109.47172 * 292.35730 * 1 2 3 24 24 H 1.09003 * 109.47010 * 239.99642 * 2 1 3 25 25 H 1.09001 * 109.46785 * 119.99971 * 2 1 3 26 26 H 1.00904 * 111.00450 * 181.79257 * 7 5 3 27 27 H 1.00902 * 110.99843 * 305.74584 * 7 5 3 28 28 H 0.96994 * 119.99928 * 179.97438 * 13 12 10 29 29 H 1.08993 * 110.66400 * 155.84586 * 18 8 5 30 30 H 1.08993 * 110.66761 * 278.98216 * 18 8 5 31 31 H 1.09004 * 109.47302 * 53.97843 * 20 19 3 32 32 H 1.09003 * 109.47168 * 173.97233 * 20 19 3 33 33 H 1.09003 * 109.47415 * 293.97347 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6251 1.9858 -0.8489 5 6 3.5784 1.4549 -0.0704 6 1 3.9651 0.4358 -0.0749 7 7 4.0282 2.1775 -1.2676 8 6 4.0350 2.1963 1.2071 9 1 4.2905 1.4871 1.9943 10 6 5.2016 3.1026 0.9093 11 1 5.0285 4.0988 0.5296 12 6 6.4903 2.6582 1.1163 13 7 6.7011 1.4451 1.5788 14 14 7.9366 3.7788 0.7400 15 1 7.4348 5.0821 0.2352 16 1 8.7272 3.9991 1.9777 17 1 8.7976 3.1463 -0.2914 18 6 2.7831 3.0233 1.5938 19 7 1.6580 2.1119 1.2622 20 6 0.4040 2.8601 1.1027 21 1 -0.3633 0.6277 -0.8137 22 1 -0.3634 -1.0184 -0.1367 23 1 -0.3633 0.3909 0.9504 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.0346 2.1670 -1.3396 27 1 3.6021 1.7985 -2.1000 28 1 7.6077 1.1323 1.7241 29 1 2.7893 3.2552 2.6588 30 1 2.7266 3.9359 1.0006 31 1 -0.3679 2.1967 0.7125 32 1 0.0900 3.2535 2.0696 33 1 0.5591 3.6854 0.4077 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259855024.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:25 Heat of formation + Delta-G solvation = -2.482846 kcal Electronic energy + Delta-G solvation = -13478.166440 eV Core-core repulsion = 11345.283469 eV Total energy + Delta-G solvation = -2132.882971 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.62644 -33.80125 -32.68847 -31.84079 -29.08202 -27.06246 -24.97217 -23.28894 -21.89599 -19.59255 -18.97851 -16.28122 -15.07508 -14.78161 -14.50281 -14.25882 -13.84543 -13.25185 -12.73324 -12.48236 -12.22161 -12.05298 -11.73458 -11.35551 -10.96123 -10.84521 -10.57009 -10.40907 -10.30952 -9.98128 -9.75688 -9.09290 -8.98898 -8.40932 -7.69689 -7.42845 -5.98906 -3.97667 3.30660 3.39701 3.45170 4.45213 4.79333 5.26603 5.33903 5.51243 5.58685 5.73628 5.86985 5.96677 6.01753 6.12748 6.21631 6.27369 6.31372 6.49201 6.57262 6.58992 6.69057 6.89544 7.13873 7.32995 7.63022 7.79673 7.92168 7.96764 8.24335 8.61243 8.65750 9.10852 9.63025 11.10847 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.054350 B = 0.010425 C = 0.009857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.059879 B = 2685.289397 C = 2840.052117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C 0.071 3.929 4 H 0.046 0.954 5 C 0.089 3.911 6 H 0.026 0.974 7 N -0.826 5.826 8 C 0.049 3.951 9 H 0.061 0.939 10 C -0.479 4.479 11 H 0.058 0.942 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.889 3.111 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.286 1.286 18 C 0.045 3.955 19 N -0.520 5.520 20 C 0.012 3.988 21 H 0.044 0.956 22 H 0.044 0.956 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.350 0.650 27 H 0.305 0.695 28 H 0.258 0.742 29 H 0.061 0.939 30 H 0.035 0.965 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.645 -1.051 -3.306 9.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.038 4.038 4 H 0.064 0.936 5 C -0.023 4.023 6 H 0.044 0.956 7 N -0.356 5.356 8 C 0.030 3.970 9 H 0.080 0.920 10 C -0.518 4.518 11 H 0.076 0.924 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.718 3.282 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.213 1.213 18 C -0.083 4.083 19 N -0.244 5.244 20 C -0.137 4.137 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.166 0.834 27 H 0.115 0.885 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -8.927 -0.903 -2.488 9.312 hybrid contribution 1.329 0.235 -1.191 1.800 sum -7.598 -0.668 -3.679 8.469 Atomic orbital electron populations 1.21846 0.96764 1.00320 1.01573 1.21517 0.95085 0.96586 1.01429 1.22459 0.96290 0.93944 0.91119 0.93575 1.22266 0.90638 0.95066 0.94372 0.95631 1.58825 1.13888 1.60193 1.02713 1.19767 0.90798 0.94296 0.92183 0.92037 1.20961 0.89731 0.99873 1.41265 0.92380 1.25034 0.98979 0.95091 0.95387 1.69969 1.20742 1.16854 1.46118 0.86577 0.82708 0.81147 0.77816 1.19721 1.21248 1.21283 1.23385 0.91208 0.94612 0.99050 1.64652 1.02766 1.27439 1.29512 1.22622 0.93846 0.96890 1.00314 0.93680 0.93719 0.91966 0.92849 0.91323 0.83448 0.88477 0.93179 0.92085 0.94620 0.91824 0.92300 0.96166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.50 37.16 0.32 -1.72 16 2 C -0.11 -1.78 5.40 -26.73 -0.14 -1.93 16 3 C 0.07 1.35 2.36 -66.65 -0.16 1.20 16 4 H 0.05 0.88 7.53 -51.93 -0.39 0.49 16 5 C 0.09 1.97 3.67 -66.35 -0.24 1.73 16 6 H 0.03 0.61 7.69 -51.93 -0.40 0.21 16 7 N -0.83 -17.31 8.44 -3.51 -0.03 -17.34 16 8 C 0.05 1.23 3.05 -89.91 -0.27 0.96 16 9 H 0.06 1.74 7.47 -51.93 -0.39 1.35 16 10 C -0.48 -12.88 6.61 -34.44 -0.23 -13.10 16 11 H 0.06 1.60 7.78 -52.48 -0.41 1.19 16 12 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 13 N -0.90 -25.71 12.88 55.43 0.71 -25.00 16 14 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 C 0.04 0.99 5.99 -1.89 -0.01 0.98 16 19 N -0.52 -10.13 5.03 -230.79 -1.16 -11.29 16 20 C 0.01 0.20 9.08 60.06 0.55 0.75 16 21 H 0.04 0.59 7.97 -51.93 -0.41 0.17 16 22 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.88 6.54 -51.93 -0.34 0.54 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.35 7.85 8.03 -39.29 -0.32 7.53 16 27 H 0.31 5.47 8.97 -39.29 -0.35 5.12 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.04 0.82 7.74 -51.93 -0.40 0.41 16 31 H 0.06 0.91 5.23 -51.93 -0.27 0.64 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.02 0.33 7.93 -51.93 -0.41 -0.08 16 LS Contribution 259.20 15.07 3.91 3.91 Total: -1.00 -27.92 259.20 -7.23 -35.15 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.34 Total: 8.14 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.29 Total: -9.73 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.48 Total: -53.63 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -27.92 -7.23 -35.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259855024.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.668 kcal (2) G-P(sol) polarization free energy of solvation -27.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds