Wall clock time and date at job start Mon Mar 30 2020 02:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47208 * 2 1 4 4 H 1.08994 * 110.06859 * 303.98873 * 3 2 1 5 5 C 1.54000 * 109.91348 * 182.78493 * 3 2 1 6 6 H 1.08996 * 110.31131 * 358.33849 * 5 3 2 7 7 N 1.46898 * 110.30878 * 120.50882 * 5 3 2 8 8 C 1.54598 * 105.13838 * 239.42229 * 5 3 2 9 9 H 1.08997 * 110.72568 * 96.58216 * 8 5 3 10 10 C 1.50701 * 110.72060 * 219.68509 * 8 5 3 11 11 H 1.08004 * 120.00109 * 84.87534 * 10 8 5 12 12 C 1.37874 * 120.00375 * 265.14138 * 10 8 5 13 13 N 1.31523 * 119.99650 * 359.72853 * 12 10 8 14 14 Si 1.86798 * 120.00582 * 179.72512 * 12 10 8 15 15 H 1.48506 * 109.46858 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46951 * 120.00022 * 14 12 10 17 17 H 1.48494 * 109.47528 * 240.00408 * 14 12 10 18 18 C 1.54940 * 102.92281 * 338.04003 * 8 5 3 19 19 N 1.47898 * 109.91874 * 65.19737 * 3 2 1 20 20 C 1.46898 * 110.99904 * 265.19369 * 19 3 2 21 21 H 1.09001 * 109.46861 * 52.35420 * 1 2 3 22 22 H 1.08996 * 109.47802 * 172.35750 * 1 2 3 23 23 H 1.09001 * 109.47172 * 292.35730 * 1 2 3 24 24 H 1.09003 * 109.47010 * 239.99642 * 2 1 3 25 25 H 1.09001 * 109.46785 * 119.99971 * 2 1 3 26 26 H 1.00904 * 111.00450 * 181.79257 * 7 5 3 27 27 H 1.00902 * 110.99843 * 305.74584 * 7 5 3 28 28 H 0.96994 * 119.99928 * 179.97438 * 13 12 10 29 29 H 1.08993 * 110.66400 * 155.84586 * 18 8 5 30 30 H 1.08993 * 110.66761 * 278.98216 * 18 8 5 31 31 H 1.09004 * 109.47302 * 53.97843 * 20 19 3 32 32 H 1.09003 * 109.47168 * 173.97233 * 20 19 3 33 33 H 1.09003 * 109.47415 * 293.97347 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6251 1.9858 -0.8489 5 6 3.5784 1.4549 -0.0704 6 1 3.9651 0.4358 -0.0749 7 7 4.0282 2.1775 -1.2676 8 6 4.0350 2.1963 1.2071 9 1 4.2905 1.4871 1.9943 10 6 5.2016 3.1026 0.9093 11 1 5.0285 4.0988 0.5296 12 6 6.4903 2.6582 1.1163 13 7 6.7011 1.4451 1.5788 14 14 7.9366 3.7788 0.7400 15 1 7.4348 5.0821 0.2352 16 1 8.7272 3.9991 1.9777 17 1 8.7976 3.1463 -0.2914 18 6 2.7831 3.0233 1.5938 19 7 1.6580 2.1119 1.2622 20 6 0.4040 2.8601 1.1027 21 1 -0.3633 0.6277 -0.8137 22 1 -0.3634 -1.0184 -0.1367 23 1 -0.3633 0.3909 0.9504 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 5.0346 2.1670 -1.3396 27 1 3.6021 1.7985 -2.1000 28 1 7.6077 1.1323 1.7241 29 1 2.7893 3.2552 2.6588 30 1 2.7266 3.9359 1.0006 31 1 -0.3679 2.1967 0.7125 32 1 0.0900 3.2535 2.0696 33 1 0.5591 3.6854 0.4077 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259855024.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:25 Heat of formation + Delta-G solvation = -22.885972 kcal Electronic energy + Delta-G solvation = -13479.051186 eV Core-core repulsion = 11345.283469 eV Total energy + Delta-G solvation = -2133.767717 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.27454 -35.59243 -34.23426 -33.63796 -30.83420 -28.60759 -26.76501 -25.03803 -23.28601 -21.26442 -20.75380 -18.31620 -16.83245 -16.42456 -16.15495 -16.03446 -15.42825 -14.85315 -14.20015 -13.99358 -13.83364 -13.69368 -13.06598 -12.90984 -12.79008 -12.62182 -12.37933 -12.11044 -11.75205 -11.55476 -11.33231 -11.12547 -10.89912 -10.48501 -9.28773 -9.17141 -8.09154 -6.13692 1.41012 1.44444 1.56087 2.45822 3.19898 3.25825 3.78998 4.06619 4.29576 4.33650 4.45270 4.52264 4.63286 4.69530 4.74934 4.79307 4.89438 4.99733 5.09657 5.19294 5.30514 5.35253 5.45398 5.56003 5.68816 5.81376 6.05228 6.30293 6.38537 6.72226 6.90323 7.03898 7.50069 9.00874 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.054350 B = 0.010425 C = 0.009857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.059879 B = 2685.289397 C = 2840.052117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C 0.078 3.922 4 H 0.054 0.946 5 C 0.093 3.907 6 H 0.002 0.998 7 N -0.825 5.825 8 C 0.039 3.961 9 H 0.019 0.981 10 C -0.482 4.482 11 H 0.050 0.950 12 C 0.009 3.991 13 N -0.932 5.932 14 Si 0.953 3.047 15 H -0.268 1.268 16 H -0.286 1.286 17 H -0.281 1.281 18 C 0.055 3.945 19 N -0.525 5.525 20 C 0.012 3.988 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.341 0.659 27 H 0.326 0.674 28 H 0.259 0.741 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.972 -0.638 -4.282 10.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C -0.031 4.031 4 H 0.072 0.928 5 C -0.019 4.019 6 H 0.020 0.980 7 N -0.355 5.355 8 C 0.019 3.981 9 H 0.038 0.962 10 C -0.521 4.521 11 H 0.068 0.932 12 C -0.188 4.188 13 N -0.572 5.572 14 Si 0.780 3.220 15 H -0.193 1.193 16 H -0.213 1.213 17 H -0.207 1.207 18 C -0.073 4.073 19 N -0.249 5.249 20 C -0.136 4.136 21 H 0.076 0.924 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.155 0.845 27 H 0.138 0.862 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -10.284 -0.485 -3.480 10.868 hybrid contribution 1.703 0.099 -0.881 1.920 sum -8.581 -0.387 -4.361 9.633 Atomic orbital electron populations 1.21776 0.94089 1.01974 1.01911 1.21488 0.97376 0.94463 1.01062 1.22430 0.93747 0.95729 0.91150 0.92826 1.22124 0.93026 0.93288 0.93482 0.97967 1.58755 1.13321 1.60088 1.03326 1.19682 0.91866 0.93975 0.92559 0.96218 1.21088 0.90665 0.99562 1.40767 0.93208 1.25707 1.01421 0.96276 0.95397 1.70097 1.21166 1.18507 1.47465 0.85574 0.79531 0.79407 0.77507 1.19266 1.21274 1.20712 1.23130 0.91202 0.94203 0.98720 1.64654 1.03088 1.27237 1.29965 1.22720 0.92523 0.97090 1.01287 0.92435 0.91736 0.92216 0.91850 0.93202 0.84537 0.86229 0.93251 0.92391 0.95305 0.89414 0.91065 0.96257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.50 71.98 0.61 -2.78 16 2 C -0.11 -3.30 5.40 30.59 0.17 -3.13 16 3 C 0.08 2.88 2.36 45.06 0.11 2.99 16 4 H 0.05 1.91 7.53 -2.39 -0.02 1.89 16 5 C 0.09 4.16 3.67 45.80 0.17 4.33 16 6 H 0.00 0.12 7.69 -2.39 -0.02 0.10 16 7 N -0.82 -34.10 8.44 -165.03 -1.39 -35.49 16 8 C 0.04 1.99 3.05 -10.33 -0.03 1.96 16 9 H 0.02 1.16 7.47 -2.39 -0.02 1.14 16 10 C -0.48 -26.27 6.61 25.60 0.17 -26.10 16 11 H 0.05 2.76 7.78 -2.91 -0.02 2.73 16 12 C 0.01 0.51 5.46 84.65 0.46 0.97 16 13 N -0.93 -54.65 12.88 21.45 0.28 -54.37 16 14 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 18 C 0.06 2.45 5.99 86.65 0.52 2.97 16 19 N -0.53 -19.80 5.03 -884.07 -4.44 -24.25 16 20 C 0.01 0.36 9.08 127.69 1.16 1.52 16 21 H 0.06 1.26 7.97 -2.39 -0.02 1.24 16 22 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.06 1.48 6.54 -2.39 -0.02 1.46 16 24 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.34 15.28 8.03 -89.69 -0.72 14.56 16 27 H 0.33 11.19 8.97 -89.69 -0.80 10.39 16 28 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 29 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.03 1.31 7.74 -2.39 -0.02 1.29 16 31 H 0.09 2.20 5.23 -2.38 -0.01 2.18 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.02 0.58 7.93 -2.39 -0.02 0.56 16 Total: -1.00 -59.99 259.20 -0.64 -60.63 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: -0.43 Total: 24.87 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 3.33 Total: -17.28 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -5.56 Total: -114.11 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -59.99 -0.64 -60.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259855024.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.746 kcal (2) G-P(sol) polarization free energy of solvation -59.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds