Wall clock time and date at job start Mon Mar 30 2020 02:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47075 * 2 1 4 4 N 1.46900 * 109.47115 * 120.00053 * 2 1 3 5 5 C 1.47960 * 110.99935 * 68.52859 * 4 2 1 6 6 C 1.53941 * 86.17560 * 137.58515 * 5 4 2 7 7 N 1.46903 * 113.73212 * 221.81616 * 6 5 4 8 8 C 1.46899 * 111.00152 * 203.10202 * 7 6 5 9 9 C 1.50698 * 109.47070 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00310 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99928 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99809 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99877 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47110 * 90.00129 * 13 11 9 15 15 H 1.48504 * 109.47309 * 209.99761 * 13 11 9 16 16 H 1.48496 * 109.47372 * 329.99983 * 13 11 9 17 17 C 1.48302 * 111.00402 * 167.88468 * 4 2 1 18 18 H 1.09003 * 109.47037 * 300.00355 * 1 2 3 19 19 H 1.08998 * 109.46990 * 59.99980 * 1 2 3 20 20 H 1.08993 * 109.47250 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46930 * 240.00081 * 2 1 3 22 22 H 1.09005 * 109.47055 * 305.29253 * 3 2 1 23 23 H 1.09004 * 109.47109 * 65.29313 * 3 2 1 24 24 H 1.09000 * 109.47036 * 185.29445 * 3 2 1 25 25 H 1.08991 * 113.75756 * 23.27162 * 5 4 2 26 26 H 1.08996 * 113.75933 * 251.89951 * 5 4 2 27 27 H 1.09000 * 113.73598 * 90.63988 * 6 5 4 28 28 H 1.00899 * 111.00149 * 79.14137 * 7 6 5 29 29 H 1.09002 * 109.46668 * 300.00024 * 8 7 6 30 30 H 1.09001 * 109.47215 * 59.99978 * 8 7 6 31 31 H 0.97000 * 119.99786 * 180.02562 * 12 11 9 32 32 H 1.09001 * 113.85879 * 108.14370 * 17 4 2 33 33 H 1.08992 * 113.75921 * 336.68005 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.7197 -2.1400 1.1356 6 6 3.1427 -2.3540 1.6826 7 7 3.8652 -3.4571 1.0352 8 6 4.9322 -3.9698 1.9051 9 6 5.6499 -5.0971 1.2086 10 1 5.3437 -5.4026 0.2190 11 6 6.6967 -5.7394 1.8353 12 7 7.0692 -5.3678 3.0406 13 14 7.5858 -7.1373 0.9723 14 1 8.7192 -6.5909 0.1836 15 1 8.1024 -8.0945 1.9833 16 1 6.6428 -7.8378 0.0639 17 6 3.4731 -0.9691 1.0974 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 1.6013 1.9830 -0.8388 23 1 1.7561 1.9282 0.9336 24 1 3.1259 1.4439 -0.0948 25 1 1.5780 -2.5147 0.1220 26 1 0.9336 -2.4562 1.8211 27 1 3.1930 -2.3939 2.7707 28 1 4.2339 -3.1720 0.1403 29 1 5.6391 -3.1693 2.1232 30 1 4.4982 -4.3350 2.8359 31 1 7.8059 -5.8194 3.4813 32 1 4.0867 -0.3506 1.7525 33 1 3.8429 -1.0022 0.0727 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259956807.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:10 Heat of formation + Delta-G solvation = 24.269362 kcal Electronic energy + Delta-G solvation = -12649.342209 eV Core-core repulsion = 10517.619301 eV Total energy + Delta-G solvation = -2131.722908 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.81923 -35.11023 -33.26946 -31.65103 -27.65651 -27.08797 -25.21871 -24.79229 -21.73239 -20.09537 -19.54165 -16.50062 -15.85679 -15.30490 -14.76385 -14.41549 -14.18543 -13.44830 -12.70193 -12.62221 -12.44769 -12.14312 -11.99120 -11.86008 -11.34228 -11.18483 -11.11791 -10.76971 -10.70392 -10.40807 -10.25501 -9.83274 -9.16533 -8.62113 -8.48955 -7.31049 -6.03787 -4.06159 3.31404 3.37573 3.42119 4.10555 4.42885 4.83430 4.92982 5.06611 5.08831 5.31863 5.34376 5.54543 5.59740 5.62980 5.70388 5.80055 5.84875 5.90389 6.11063 6.11322 6.13773 6.19448 6.49191 6.56408 7.22541 7.31225 7.41565 7.77178 8.11370 8.35720 8.57853 9.02853 9.58855 11.07190 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.079934 B = 0.006136 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.203041 B = 4562.226760 C = 4601.691610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.042 3.958 3 C -0.141 4.141 4 N -0.477 5.477 5 C 0.010 3.990 6 C 0.068 3.932 7 N -0.679 5.679 8 C 0.194 3.806 9 C -0.517 4.517 10 H 0.062 0.938 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.899 3.101 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.027 4.027 18 H 0.061 0.939 19 H 0.055 0.945 20 H 0.055 0.945 21 H 0.044 0.956 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.330 0.670 29 H -0.012 1.012 30 H 0.029 0.971 31 H 0.262 0.738 32 H 0.082 0.918 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.346 10.030 -5.331 14.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.068 4.068 3 C -0.199 4.199 4 N -0.201 5.201 5 C -0.120 4.120 6 C -0.044 4.044 7 N -0.308 5.308 8 C 0.067 3.933 9 C -0.555 4.555 10 H 0.080 0.920 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.727 3.273 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.157 4.157 18 H 0.080 0.920 19 H 0.074 0.926 20 H 0.074 0.926 21 H 0.062 0.938 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.147 0.853 29 H 0.006 0.994 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.927 9.894 -4.461 14.709 hybrid contribution 1.487 -0.407 -1.206 1.958 sum -8.440 9.487 -5.668 13.906 Atomic orbital electron populations 1.21774 0.94470 1.01961 1.01712 1.22148 0.96008 0.95876 0.92720 1.21759 1.00862 0.95357 1.01882 1.68599 1.06251 1.10671 1.34595 1.24092 0.98986 0.87918 1.00981 1.23374 0.93615 0.87962 0.99470 1.60584 1.31937 1.31724 1.06565 1.19598 0.87003 0.94029 0.92660 1.21194 1.14754 1.16801 1.02764 0.92027 1.24989 0.97078 0.97505 0.94955 1.69964 1.28451 1.41904 1.13341 0.86481 0.79739 0.81884 0.79204 1.20734 1.21207 1.19781 1.24766 0.90981 0.99434 1.00554 0.92031 0.92636 0.92631 0.93803 0.92613 0.91944 0.92886 0.91261 0.89852 0.88385 0.85256 0.99399 0.95287 0.92881 0.89962 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.23 37.16 0.34 -1.19 16 2 C 0.04 0.52 2.26 -67.71 -0.15 0.37 16 3 C -0.14 -1.56 9.21 37.16 0.34 -1.22 16 4 N -0.48 -6.99 5.98 -230.14 -1.38 -8.36 16 5 C 0.01 0.15 6.80 -2.76 -0.02 0.13 16 6 C 0.07 1.23 4.34 -69.40 -0.30 0.93 16 7 N -0.68 -14.54 6.61 -109.23 -0.72 -15.26 16 8 C 0.19 5.08 5.30 -4.98 -0.03 5.05 16 9 C -0.52 -14.68 9.32 -34.44 -0.32 -15.00 16 10 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 13 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 C -0.03 -0.42 6.92 -2.57 -0.02 -0.44 16 18 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 19 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 20 H 0.05 0.61 7.47 -51.93 -0.39 0.22 16 21 H 0.04 0.57 7.69 -51.93 -0.40 0.17 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.60 7.74 -51.93 -0.40 0.20 16 25 H 0.07 1.05 7.82 -51.93 -0.41 0.65 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.10 1.88 7.88 -51.93 -0.41 1.47 16 28 H 0.33 6.74 8.20 -39.29 -0.32 6.42 16 29 H -0.01 -0.33 8.14 -51.93 -0.42 -0.75 16 30 H 0.03 0.82 8.13 -51.93 -0.42 0.40 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.07 1.01 7.45 -51.93 -0.39 0.63 16 LS Contribution 271.06 15.07 4.08 4.08 Total: -1.00 -29.32 271.06 -8.19 -37.50 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.64 Total: 1.36 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -0.25 Total: -9.85 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -1.36 Total: -49.78 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.32 -8.19 -37.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259956807.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.774 kcal (2) G-P(sol) polarization free energy of solvation -29.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds