Wall clock time and date at job start Mon Mar 30 2020 02:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47075 * 2 1 4 4 N 1.46900 * 109.47115 * 120.00053 * 2 1 3 5 5 C 1.47960 * 110.99935 * 68.52859 * 4 2 1 6 6 C 1.53941 * 86.17560 * 137.58515 * 5 4 2 7 7 N 1.46903 * 113.73212 * 221.81616 * 6 5 4 8 8 C 1.46899 * 111.00152 * 203.10202 * 7 6 5 9 9 C 1.50698 * 109.47070 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00310 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99928 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99809 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99877 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47110 * 90.00129 * 13 11 9 15 15 H 1.48504 * 109.47309 * 209.99761 * 13 11 9 16 16 H 1.48496 * 109.47372 * 329.99983 * 13 11 9 17 17 C 1.48302 * 111.00402 * 167.88468 * 4 2 1 18 18 H 1.09003 * 109.47037 * 300.00355 * 1 2 3 19 19 H 1.08998 * 109.46990 * 59.99980 * 1 2 3 20 20 H 1.08993 * 109.47250 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46930 * 240.00081 * 2 1 3 22 22 H 1.09005 * 109.47055 * 305.29253 * 3 2 1 23 23 H 1.09004 * 109.47109 * 65.29313 * 3 2 1 24 24 H 1.09000 * 109.47036 * 185.29445 * 3 2 1 25 25 H 1.08991 * 113.75756 * 23.27162 * 5 4 2 26 26 H 1.08996 * 113.75933 * 251.89951 * 5 4 2 27 27 H 1.09000 * 113.73598 * 90.63988 * 6 5 4 28 28 H 1.00899 * 111.00149 * 79.14137 * 7 6 5 29 29 H 1.09002 * 109.46668 * 300.00024 * 8 7 6 30 30 H 1.09001 * 109.47215 * 59.99978 * 8 7 6 31 31 H 0.97000 * 119.99786 * 180.02562 * 12 11 9 32 32 H 1.09001 * 113.85879 * 108.14370 * 17 4 2 33 33 H 1.08992 * 113.75921 * 336.68005 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.7197 -2.1400 1.1356 6 6 3.1427 -2.3540 1.6826 7 7 3.8652 -3.4571 1.0352 8 6 4.9322 -3.9698 1.9051 9 6 5.6499 -5.0971 1.2086 10 1 5.3437 -5.4026 0.2190 11 6 6.6967 -5.7394 1.8353 12 7 7.0692 -5.3678 3.0406 13 14 7.5858 -7.1373 0.9723 14 1 8.7192 -6.5909 0.1836 15 1 8.1024 -8.0945 1.9833 16 1 6.6428 -7.8378 0.0639 17 6 3.4731 -0.9691 1.0974 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 1.6013 1.9830 -0.8388 23 1 1.7561 1.9282 0.9336 24 1 3.1259 1.4439 -0.0948 25 1 1.5780 -2.5147 0.1220 26 1 0.9336 -2.4562 1.8211 27 1 3.1930 -2.3939 2.7707 28 1 4.2339 -3.1720 0.1403 29 1 5.6391 -3.1693 2.1232 30 1 4.4982 -4.3350 2.8359 31 1 7.8059 -5.8194 3.4813 32 1 4.0867 -0.3506 1.7525 33 1 3.8429 -1.0022 0.0727 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259956807.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:09 Heat of formation + Delta-G solvation = 2.272109 kcal Electronic energy + Delta-G solvation = -12650.296081 eV Core-core repulsion = 10517.619301 eV Total energy + Delta-G solvation = -2132.676781 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.09500 -36.67362 -34.95242 -33.41225 -28.94400 -28.61112 -26.45647 -26.31027 -23.72966 -21.31148 -20.85628 -18.50979 -17.21765 -16.84912 -16.41278 -15.86915 -15.42684 -14.83988 -14.41945 -14.20942 -13.75731 -13.58139 -13.12293 -12.94479 -12.88683 -12.75346 -12.68397 -12.28940 -12.19629 -11.91578 -11.63442 -11.51273 -11.10642 -10.66814 -9.82254 -9.09640 -8.22602 -6.34438 1.41731 1.43534 1.55335 2.40123 2.90138 3.10655 3.47346 3.70434 3.94214 4.05053 4.12981 4.25533 4.45283 4.46654 4.65346 4.79050 4.82858 4.91792 4.93031 4.99968 5.06595 5.12412 5.14150 5.27324 5.35367 5.49766 5.61430 6.01131 6.14809 6.43061 6.68714 6.87569 7.36764 8.88868 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.079934 B = 0.006136 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.203041 B = 4562.226760 C = 4601.691610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.036 3.964 3 C -0.138 4.138 4 N -0.479 5.479 5 C 0.024 3.976 6 C 0.052 3.948 7 N -0.676 5.676 8 C 0.210 3.790 9 C -0.538 4.538 10 H 0.065 0.935 11 C 0.002 3.998 12 N -0.934 5.934 13 Si 0.974 3.026 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.264 1.264 17 C -0.016 4.016 18 H 0.059 0.941 19 H 0.075 0.925 20 H 0.051 0.949 21 H 0.043 0.957 22 H 0.076 0.924 23 H 0.058 0.942 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.337 0.663 29 H -0.037 1.037 30 H -0.001 1.001 31 H 0.265 0.735 32 H 0.080 0.920 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.914 10.206 -6.889 15.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.073 4.073 3 C -0.195 4.195 4 N -0.203 5.203 5 C -0.105 4.105 6 C -0.059 4.059 7 N -0.306 5.306 8 C 0.082 3.918 9 C -0.576 4.576 10 H 0.083 0.917 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.799 3.201 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.189 1.189 17 C -0.147 4.147 18 H 0.078 0.922 19 H 0.094 0.906 20 H 0.071 0.929 21 H 0.061 0.939 22 H 0.095 0.905 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.098 0.902 28 H 0.155 0.845 29 H -0.019 1.019 30 H 0.017 0.983 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.521 10.095 -6.031 15.779 hybrid contribution 1.615 -0.396 -0.701 1.805 sum -8.906 9.699 -6.732 14.788 Atomic orbital electron populations 1.21754 0.93007 1.02079 1.02672 1.22288 0.97218 0.96323 0.91427 1.21743 1.00581 0.94548 1.02642 1.68613 1.05242 1.10184 1.36212 1.23979 0.96945 0.88443 1.01178 1.23493 0.95451 0.88402 0.98592 1.60482 1.30097 1.33773 1.06238 1.19215 0.87360 0.93049 0.92177 1.21561 1.15395 1.17580 1.03102 0.91711 1.25965 0.97855 1.00251 0.95605 1.70095 1.29074 1.43319 1.14938 0.85309 0.78513 0.78232 0.78094 1.19619 1.20735 1.18870 1.24629 0.92007 0.97424 1.00607 0.92180 0.90602 0.92943 0.93892 0.90496 0.92279 0.93483 0.90636 0.89134 0.90207 0.84523 1.01903 0.98307 0.92582 0.90163 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.23 71.98 0.66 -1.95 16 2 C 0.04 0.82 2.26 44.92 0.10 0.93 16 3 C -0.14 -2.73 9.21 71.98 0.66 -2.06 16 4 N -0.48 -13.35 5.98 -882.04 -5.27 -18.62 16 5 C 0.02 0.71 6.80 86.41 0.59 1.30 16 6 C 0.05 1.90 4.34 46.48 0.20 2.10 16 7 N -0.68 -29.25 6.61 -499.50 -3.30 -32.55 16 8 C 0.21 11.36 5.30 85.56 0.45 11.82 16 9 C -0.54 -30.89 9.32 25.60 0.24 -30.65 16 10 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 11 C 0.00 0.09 5.46 84.66 0.46 0.55 16 12 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 13 Si 0.97 44.30 29.54 68.60 2.03 46.33 16 14 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 16 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 17 C -0.02 -0.49 6.92 86.34 0.60 0.10 16 18 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 19 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 20 H 0.05 1.03 7.47 -2.39 -0.02 1.01 16 21 H 0.04 1.00 7.69 -2.39 -0.02 0.98 16 22 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 23 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 24 H 0.05 0.98 7.74 -2.39 -0.02 0.96 16 25 H 0.08 2.16 7.82 -2.39 -0.02 2.14 16 26 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.08 3.18 7.88 -2.39 -0.02 3.16 16 28 H 0.34 13.69 8.20 -89.69 -0.74 12.95 16 29 H -0.04 -2.13 8.14 -2.39 -0.02 -2.15 16 30 H 0.00 -0.07 8.13 -2.39 -0.02 -0.09 16 31 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 32 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.07 2.17 7.45 -2.39 -0.02 2.15 16 Total: -1.00 -62.39 271.06 -1.97 -64.36 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.33 Total: 14.91 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 3.97 Total: -17.88 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -8.29 Total: -107.71 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -62.39 -1.97 -64.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259956807.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.627 kcal (2) G-P(sol) polarization free energy of solvation -62.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds