Wall clock time and date at job start Mon Mar 30 2020 02:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47526 * 2 1 4 4 N 1.46904 * 109.46833 * 119.99955 * 2 1 3 5 5 C 1.48529 * 110.99955 * 179.72198 * 4 2 1 6 6 C 1.55101 * 103.28531 * 200.33296 * 5 4 2 7 7 C 1.54592 * 102.84333 * 37.30933 * 6 5 4 8 8 N 1.46908 * 110.30689 * 219.18238 * 7 6 5 9 9 C 1.50705 * 110.30955 * 97.11750 * 7 6 5 10 10 H 1.07990 * 119.99684 * 242.78658 * 9 7 6 11 11 C 1.37876 * 119.99644 * 62.78943 * 9 7 6 12 12 N 1.31522 * 119.99527 * 180.02562 * 11 9 7 13 13 Si 1.86797 * 120.00635 * 359.97438 * 11 9 7 14 14 H 1.48491 * 109.47260 * 89.99897 * 13 11 9 15 15 H 1.48501 * 109.47507 * 210.00368 * 13 11 9 16 16 H 1.48504 * 109.46833 * 329.99922 * 13 11 9 17 17 C 1.47910 * 111.00005 * 62.32834 * 4 2 1 18 18 H 1.08998 * 109.47339 * 300.00084 * 1 2 3 19 19 H 1.09000 * 109.47024 * 60.00110 * 1 2 3 20 20 H 1.09006 * 109.47232 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46965 * 239.99234 * 2 1 3 22 22 H 1.08998 * 109.47184 * 305.67701 * 3 2 1 23 23 H 1.09004 * 109.46918 * 65.67224 * 3 2 1 24 24 H 1.09002 * 109.47294 * 185.67527 * 3 2 1 25 25 H 1.09004 * 110.67000 * 318.71571 * 5 4 2 26 26 H 1.08999 * 110.66424 * 81.84783 * 5 4 2 27 27 H 1.08999 * 110.71135 * 278.99480 * 6 5 4 28 28 H 1.09005 * 110.81037 * 155.66327 * 6 5 4 29 29 H 1.00899 * 111.00183 * 297.21379 * 8 7 6 30 30 H 1.00897 * 110.99719 * 61.16417 * 8 7 6 31 31 H 0.96999 * 119.99969 * 180.02562 * 12 11 9 32 32 H 1.09001 * 109.91601 * 26.49435 * 17 4 2 33 33 H 1.08994 * 109.91628 * 265.19264 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.5043 -0.7182 1.2305 6 6 3.8204 -1.8843 2.2030 7 6 2.7214 -2.9186 1.8681 8 7 2.2352 -3.5618 3.0962 9 6 3.2522 -3.9546 0.9110 10 1 2.8177 -4.0540 -0.0726 11 6 4.2926 -4.7756 1.2913 12 7 4.7562 -5.6794 0.4559 13 14 5.0446 -4.6033 2.9925 14 1 4.3261 -5.4891 3.9434 15 1 6.4775 -4.9901 2.9419 16 1 4.9282 -3.1936 3.4447 17 6 1.5917 -2.1083 1.2059 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.8933 -0.5139 -0.8899 22 1 1.5962 1.9848 -0.8348 23 1 1.7621 1.9261 0.9365 24 1 3.1254 1.4440 -0.1016 25 1 3.9064 -0.9262 0.2389 26 1 3.8973 0.2223 1.6166 27 1 3.7379 -1.5555 3.2390 28 1 4.8103 -2.2958 2.0056 29 1 2.9737 -4.0775 3.5509 30 1 1.8288 -2.8836 3.7230 31 1 5.4879 -6.2572 0.7235 32 1 1.4367 -2.4540 0.1839 33 1 0.6718 -2.2156 1.7807 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260001464.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:17 Heat of formation + Delta-G solvation = 16.432353 kcal Electronic energy + Delta-G solvation = -13585.586025 eV Core-core repulsion = 11453.523278 eV Total energy + Delta-G solvation = -2132.062746 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.85781 -35.28021 -32.20305 -31.13295 -28.71516 -27.24475 -26.34145 -24.31376 -21.54750 -19.79211 -18.98002 -16.37833 -15.80325 -15.69454 -14.35433 -14.04752 -13.85780 -13.39517 -12.77454 -12.55251 -12.30627 -11.91940 -11.69186 -11.65040 -11.51624 -11.15891 -10.61098 -10.53354 -10.37323 -10.32751 -9.88169 -9.33918 -9.11835 -8.65207 -7.80285 -7.52170 -6.13886 -4.14806 3.20701 3.24488 3.32651 4.32397 4.54125 5.05307 5.26002 5.28581 5.55429 5.68921 5.75203 5.83254 5.87107 6.03939 6.06565 6.10377 6.13468 6.31437 6.38992 6.48161 6.53583 6.64505 6.73333 6.78147 7.04215 7.34865 7.67442 7.71197 8.28578 8.34885 8.59094 8.91121 9.48238 10.99074 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051719 B = 0.011450 C = 0.011285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.253638 B = 2444.822096 C = 2480.551811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.065 3.935 3 C -0.141 4.141 4 N -0.519 5.519 5 C 0.046 3.954 6 C -0.155 4.155 7 C 0.205 3.795 8 N -0.833 5.833 9 C -0.492 4.492 10 H 0.076 0.924 11 C 0.075 3.925 12 N -0.896 5.896 13 Si 0.860 3.140 14 H -0.277 1.277 15 H -0.295 1.295 16 H -0.243 1.243 17 C 0.061 3.939 18 H 0.058 0.942 19 H 0.052 0.948 20 H 0.056 0.944 21 H 0.040 0.960 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.318 0.682 30 H 0.313 0.687 31 H 0.264 0.736 32 H 0.047 0.953 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.788 11.014 1.888 11.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.044 4.044 3 C -0.199 4.199 4 N -0.244 5.244 5 C -0.082 4.082 6 C -0.195 4.195 7 C 0.114 3.886 8 N -0.367 5.367 9 C -0.531 4.531 10 H 0.094 0.906 11 C -0.128 4.128 12 N -0.533 5.533 13 Si 0.689 3.311 14 H -0.204 1.204 15 H -0.223 1.223 16 H -0.168 1.168 17 C -0.067 4.067 18 H 0.078 0.922 19 H 0.071 0.929 20 H 0.075 0.925 21 H 0.058 0.942 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.135 0.865 30 H 0.125 0.875 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.371 10.740 1.809 11.735 hybrid contribution 1.569 0.018 0.614 1.685 sum -2.802 10.758 2.423 11.378 Atomic orbital electron populations 1.21812 0.94798 1.02043 1.01249 1.21760 0.95495 0.94921 0.92223 1.21819 1.00771 0.95725 1.01574 1.64884 1.08735 1.14519 1.36258 1.23065 0.88131 0.97995 0.99031 1.23849 1.01936 0.97029 0.96698 1.19652 0.89061 0.91248 0.88662 1.59560 1.37743 1.30747 1.08648 1.20893 1.16008 1.16327 0.99867 0.90631 1.25016 0.96395 0.94649 0.96716 1.69891 1.26961 1.21012 1.35483 0.87568 0.78043 0.79765 0.85679 1.20442 1.22264 1.16775 1.22793 0.98393 0.85668 0.99881 0.92245 0.92925 0.92477 0.94172 0.92824 0.92143 0.92935 0.93652 0.91860 0.93615 0.91081 0.86465 0.87515 0.92586 0.93453 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.13 37.16 0.34 -1.62 16 2 C 0.07 1.03 2.36 -67.71 -0.16 0.87 16 3 C -0.14 -1.86 8.91 37.15 0.33 -1.53 16 4 N -0.52 -9.52 5.11 -222.39 -1.14 -10.66 16 5 C 0.05 0.87 5.45 -1.81 -0.01 0.86 16 6 C -0.15 -3.32 4.20 -24.78 -0.10 -3.42 16 7 C 0.21 4.78 0.80 -131.39 -0.11 4.68 16 8 N -0.83 -18.65 8.77 0.91 0.01 -18.64 16 9 C -0.49 -13.74 8.81 -34.44 -0.30 -14.05 16 10 H 0.08 2.31 7.59 -52.49 -0.40 1.91 16 11 C 0.07 2.14 5.36 -17.82 -0.10 2.04 16 12 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 13 Si 0.86 20.77 23.10 -169.99 -3.93 16.85 16 14 H -0.28 -6.65 6.99 56.52 0.40 -6.26 16 15 H -0.30 -7.25 7.11 56.52 0.40 -6.84 16 16 H -0.24 -5.38 4.44 56.52 0.25 -5.13 16 17 C 0.06 1.26 4.85 -2.75 -0.01 1.25 16 18 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 19 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 20 H 0.06 0.84 7.20 -51.93 -0.37 0.46 16 21 H 0.04 0.69 7.99 -51.93 -0.42 0.27 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.70 7.25 -51.93 -0.38 0.32 16 25 H 0.05 0.91 8.00 -51.93 -0.42 0.49 16 26 H 0.06 1.07 7.79 -51.93 -0.40 0.67 16 27 H 0.05 0.93 7.79 -51.93 -0.40 0.52 16 28 H 0.07 1.63 5.14 -51.93 -0.27 1.36 16 29 H 0.32 7.28 4.19 -39.29 -0.16 7.12 16 30 H 0.31 6.12 8.95 -39.29 -0.35 5.77 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.05 1.05 6.85 -51.93 -0.36 0.69 16 33 H 0.07 1.39 7.91 -51.93 -0.41 0.98 16 LS Contribution 246.88 15.07 3.72 3.72 Total: -1.00 -29.47 246.88 -6.00 -35.47 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.32 Total: 10.68 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -0.12 Total: -10.93 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.35 Total: -55.79 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -3.93 Total: 16.85 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.47 -6.00 -35.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001464.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.900 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds