Wall clock time and date at job start Mon Mar 30 2020 02:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47526 * 2 1 4 4 N 1.46904 * 109.46833 * 119.99955 * 2 1 3 5 5 C 1.48529 * 110.99955 * 179.72198 * 4 2 1 6 6 C 1.55101 * 103.28531 * 200.33296 * 5 4 2 7 7 C 1.54592 * 102.84333 * 37.30933 * 6 5 4 8 8 N 1.46908 * 110.30689 * 219.18238 * 7 6 5 9 9 C 1.50705 * 110.30955 * 97.11750 * 7 6 5 10 10 H 1.07990 * 119.99684 * 242.78658 * 9 7 6 11 11 C 1.37876 * 119.99644 * 62.78943 * 9 7 6 12 12 N 1.31522 * 119.99527 * 180.02562 * 11 9 7 13 13 Si 1.86797 * 120.00635 * 359.97438 * 11 9 7 14 14 H 1.48491 * 109.47260 * 89.99897 * 13 11 9 15 15 H 1.48501 * 109.47507 * 210.00368 * 13 11 9 16 16 H 1.48504 * 109.46833 * 329.99922 * 13 11 9 17 17 C 1.47910 * 111.00005 * 62.32834 * 4 2 1 18 18 H 1.08998 * 109.47339 * 300.00084 * 1 2 3 19 19 H 1.09000 * 109.47024 * 60.00110 * 1 2 3 20 20 H 1.09006 * 109.47232 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46965 * 239.99234 * 2 1 3 22 22 H 1.08998 * 109.47184 * 305.67701 * 3 2 1 23 23 H 1.09004 * 109.46918 * 65.67224 * 3 2 1 24 24 H 1.09002 * 109.47294 * 185.67527 * 3 2 1 25 25 H 1.09004 * 110.67000 * 318.71571 * 5 4 2 26 26 H 1.08999 * 110.66424 * 81.84783 * 5 4 2 27 27 H 1.08999 * 110.71135 * 278.99480 * 6 5 4 28 28 H 1.09005 * 110.81037 * 155.66327 * 6 5 4 29 29 H 1.00899 * 111.00183 * 297.21379 * 8 7 6 30 30 H 1.00897 * 110.99719 * 61.16417 * 8 7 6 31 31 H 0.96999 * 119.99969 * 180.02562 * 12 11 9 32 32 H 1.09001 * 109.91601 * 26.49435 * 17 4 2 33 33 H 1.08994 * 109.91628 * 265.19264 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.5043 -0.7182 1.2305 6 6 3.8204 -1.8843 2.2030 7 6 2.7214 -2.9186 1.8681 8 7 2.2352 -3.5618 3.0962 9 6 3.2522 -3.9546 0.9110 10 1 2.8177 -4.0540 -0.0726 11 6 4.2926 -4.7756 1.2913 12 7 4.7562 -5.6794 0.4559 13 14 5.0446 -4.6033 2.9925 14 1 4.3261 -5.4891 3.9434 15 1 6.4775 -4.9901 2.9419 16 1 4.9282 -3.1936 3.4447 17 6 1.5917 -2.1083 1.2059 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.8933 -0.5139 -0.8899 22 1 1.5962 1.9848 -0.8348 23 1 1.7621 1.9261 0.9365 24 1 3.1254 1.4440 -0.1016 25 1 3.9064 -0.9262 0.2389 26 1 3.8973 0.2223 1.6166 27 1 3.7379 -1.5555 3.2390 28 1 4.8103 -2.2958 2.0056 29 1 2.9737 -4.0775 3.5509 30 1 1.8288 -2.8836 3.7230 31 1 5.4879 -6.2572 0.7235 32 1 1.4367 -2.4540 0.1839 33 1 0.6718 -2.2156 1.7807 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260001464.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:16 Heat of formation + Delta-G solvation = -7.473399 kcal Electronic energy + Delta-G solvation = -13586.622656 eV Core-core repulsion = 11453.523278 eV Total energy + Delta-G solvation = -2133.099378 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.143 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.46041 -36.85643 -34.22335 -32.76514 -30.22966 -28.92840 -27.78214 -26.15191 -23.08207 -21.36287 -20.65486 -18.40651 -17.69858 -17.17169 -15.86202 -15.67973 -15.45604 -15.21030 -14.45070 -14.19320 -13.82531 -13.36630 -13.26082 -12.97428 -12.86192 -12.66934 -12.40069 -12.23076 -11.82106 -11.68789 -11.62728 -11.33419 -10.95575 -10.78718 -9.37753 -9.27574 -8.34006 -6.40698 1.28759 1.30576 1.40012 2.27936 2.96489 3.10877 3.89169 3.93684 4.01554 4.13994 4.31899 4.40451 4.47914 4.62915 4.79742 4.82824 4.88336 4.97346 4.99062 5.01955 5.06153 5.12959 5.26708 5.32007 5.41387 5.52643 5.94319 6.19888 6.29113 6.49988 6.52861 6.94211 7.27162 8.82582 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.051719 B = 0.011450 C = 0.011285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.253638 B = 2444.822096 C = 2480.551811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.057 3.943 3 C -0.134 4.134 4 N -0.508 5.508 5 C 0.050 3.950 6 C -0.155 4.155 7 C 0.201 3.799 8 N -0.840 5.840 9 C -0.499 4.499 10 H 0.026 0.974 11 C 0.015 3.985 12 N -0.948 5.948 13 Si 0.924 3.076 14 H -0.270 1.270 15 H -0.301 1.301 16 H -0.206 1.206 17 C 0.069 3.931 18 H 0.068 0.932 19 H 0.075 0.925 20 H 0.040 0.960 21 H 0.019 0.981 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.026 0.974 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.317 0.683 30 H 0.335 0.665 31 H 0.265 0.735 32 H 0.020 0.980 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.135 13.471 3.845 14.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.052 4.052 3 C -0.191 4.191 4 N -0.233 5.233 5 C -0.079 4.079 6 C -0.195 4.195 7 C 0.109 3.891 8 N -0.375 5.375 9 C -0.538 4.538 10 H 0.044 0.956 11 C -0.183 4.183 12 N -0.588 5.588 13 Si 0.750 3.250 14 H -0.197 1.197 15 H -0.228 1.228 16 H -0.129 1.129 17 C -0.059 4.059 18 H 0.087 0.913 19 H 0.094 0.906 20 H 0.059 0.941 21 H 0.037 0.963 22 H 0.094 0.906 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.114 0.886 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.134 0.866 30 H 0.149 0.851 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.748 13.233 3.769 14.556 hybrid contribution 1.598 -0.755 -0.120 1.772 sum -3.150 12.478 3.649 13.377 Atomic orbital electron populations 1.21783 0.93177 1.01530 1.02903 1.21958 0.96923 0.96139 0.90186 1.21771 1.00711 0.93653 1.03002 1.64969 1.08207 1.12490 1.37641 1.23067 0.88592 0.98545 0.97648 1.23746 1.00082 0.97080 0.98590 1.19554 0.90584 0.90585 0.88352 1.59305 1.37826 1.31624 1.08723 1.21111 1.15925 1.17676 0.99094 0.95600 1.25929 0.96922 0.94092 1.01313 1.70063 1.28016 1.22572 1.38137 0.86528 0.76435 0.81846 0.80195 1.19668 1.22849 1.12922 1.22608 0.98037 0.87093 0.98202 0.91276 0.90585 0.94091 0.96313 0.90581 0.91330 0.93142 0.95525 0.88642 0.91276 0.92666 0.86617 0.85067 0.92621 0.96127 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.13 71.98 0.66 -2.82 16 2 C 0.06 1.68 2.36 44.91 0.11 1.79 16 3 C -0.13 -3.09 8.91 71.98 0.64 -2.45 16 4 N -0.51 -17.61 5.11 -857.52 -4.38 -22.00 16 5 C 0.05 1.78 5.45 86.71 0.47 2.25 16 6 C -0.15 -6.25 4.20 31.86 0.13 -6.11 16 7 C 0.20 9.20 0.80 3.66 0.00 9.20 16 8 N -0.84 -35.73 8.77 -151.03 -1.33 -37.06 16 9 C -0.50 -28.75 8.81 25.60 0.23 -28.53 16 10 H 0.03 1.69 7.59 -2.92 -0.02 1.67 16 11 C 0.02 0.88 5.36 84.65 0.45 1.33 16 12 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 13 Si 0.92 42.63 23.10 68.60 1.58 44.21 16 14 H -0.27 -12.11 6.99 99.48 0.70 -11.41 16 15 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 16 H -0.21 -8.26 4.44 99.48 0.44 -7.81 16 17 C 0.07 2.84 4.85 86.44 0.42 3.26 16 18 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 19 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 20 H 0.04 1.16 7.20 -2.38 -0.02 1.14 16 21 H 0.02 0.64 7.99 -2.39 -0.02 0.62 16 22 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.05 1.18 7.25 -2.39 -0.02 1.16 16 25 H 0.03 1.05 8.00 -2.39 -0.02 1.03 16 26 H 0.10 2.85 7.79 -2.39 -0.02 2.83 16 27 H 0.07 2.49 7.79 -2.39 -0.02 2.47 16 28 H 0.05 2.41 5.14 -2.38 -0.01 2.39 16 29 H 0.32 13.64 4.19 -89.69 -0.38 13.26 16 30 H 0.34 11.94 8.95 -89.70 -0.80 11.14 16 31 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 32 H 0.02 0.94 6.85 -2.39 -0.02 0.92 16 33 H 0.08 3.05 7.91 -2.39 -0.02 3.04 16 Total: -1.00 -65.37 246.88 -1.07 -66.44 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: -0.36 Total: 30.09 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: 3.11 Total: -22.07 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -5.41 Total: -118.67 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 1.58 Total: 44.21 kcal Total: -65.37 -1.07 -66.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001464.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.970 kcal (2) G-P(sol) polarization free energy of solvation -65.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds